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145 Cards in this Set

  • Front
  • Back
What is cell theory?


All organisms are made up of cells


The cell is the basic living unit of organization for all organisms


All cells come from pre-existing cells

All cells are surrounded by what?

A Plasma Membrane
All cells contain what?


Cytosol


-A semi-fluid substance within the membrane


Cytoplasm


Chromosomes


Ribosomes


What is cytoplasm?


Within all cells


Cytosol + organelles

What are chromosomes?
Tiny organelles that make proteins using instructions contained in genes
What is the difference between a prokaryote vs. a eukaryote
The location of the chromosomes

What is a prokaryotic cell?

DNA in nucleotide region, without a membrane separating it from the rest of the cells

What is a eukaryotic cell?

Chromosomes in nucleus, membrane enclosed organelle
How is a eukaryotic cell different than a prokaryotic cell?


More complex


Within cytoplasm is a variety of membrane-bounded organelles


Specialized structures in form & function


Generally bigger than prokaryotic

What is the lower limit of a cell size?


Smallest bacteria, mycoplasmas


-0.1 to 1.0 micron


Most bacteria


- 1-10 microns

What is the upper limit of a cell size?

Eukaryotic cells


- 10-100 microns

What limits cell size?


Surface to volume ratio


-As the cell gets bigger its volume increases faster than its surface area


--Smaller objects have greater ratio of surface area to volume

Why are there limits to cell size?


Because in a large cell it cannot move material in & out fast enough to support life


Meaning metabolic requirements set upper limit

But how do cells get bigger without dying then?

They become multi-cellular (cells divide) and hang out really close to each other
What is the function of the cell membrane?

It is the exchange organelle


Plasma membrane functions as selective barrier


-Allows passage of O2, nutrients & waste

What do organelles do?


Specialized structures w/ specialized functions


Containers


A site for chemical reactions


Make protein


Make energy


Make more cells

What dos the nucleus do?


Protects DNA


Where does the nucleus live?


In the nuclear envelope


-Double membrane


Membrane fused in spots to create pores


-Allows large macromolecules to pass through

What is the function of the nucleolus?


Ribosome production


-Build ribosome sub units form rRNA & proteins


-Exit through nuclear pores to cytoplasm & combine to form functional ribosomes

Where does the nucleolus live?

In the nucleus
What is the function of ribosomes?

Protein production

What is the structure of ribosomes?


rRNA & protein


2 subunits combine

What are the different types of ribosomes?

Free & Bound

Where do free ribosomes live & what is their function?


Suspended in the cytosol


Synthesize proteins that function in cytosol

Where do bound ribosomes live & what is their function?


Attached to endoplasmic reticulum


Synthesize proteins for export or for membranes

What is the function of the endoplasmic reticulum?


Processes proteins


Manufactures membranes


Synthesis & hydrolysis of many compounds

Where does the endoplasmic reticulum live?

Membrane connected to nuclear envelope & extends throughout cell
What are the two types of endoplasmic reticulum?

Rough & smooth ER
What are the functions of smooth ER?


Membrane production


Metabolic processes


-Synthesizes lipids (oils, phospholipids, steroids & sex hormones)


-Hydrolyze glycogen into glucose in the liver


-Detoxify drugs & poisons in liver


--ex. alcohol & barbiturates

What are the functions of the membrane factory?


Builds new membrane


-Synthesize phospholipids (builds membranes)


ER membrane expands


-Buds off & transfers to other parts of the cell that needs membranes

What are the functions of rough ER?

Produce proteins for export out of cell


-Protein secreting cells


-Packaged into transport vesicles for export

What are the functions of the Golgi Apparatus?


Finishes, sorts, tags & ships cell products


-Think UPS shipping department


Ships products in vesicles


-Membrane sacs


-"UPS trucks"

What are the functions of the lysosomes?


Little "stomachs of the cell which digest macromolecules


Also the "clean up crew" of the cell which cleans up broken down organelles


-Are fused with food vacuoles


--Polymers digested into monomers


--Pass to cytosol to become nutrients of cell

Where do the lysosomes live?

Vesicles of digestive enzymes


Only live in animals



What is the pH of lysosomal enzymes?

Work best at a pH of 5

Diseases of lysosomes are often what?


Fatal


-Digestive enzymes not working in lysosomes


-Picks up biomolecules, but can't digest one


-Grows larger until disrupts cell & organ function


How many lysosomal storage diseases are there?

More than 40

💖💖CUTENESS BREAK💖💖



Mitochondria & Chloroplast similarities?


Transform energy


-Generate ATP


Double membranes = 2 membranes


Semi-autonomous organelles


-Move, change shape, divide


Internal ribosomes, DNA & enzymes

What is the function of mitochondria?


Cellular respiration


Generate ATP


-Breakdown of sugars, fats, & other fuels


In the presence of oxygen they break down larger molecules into smaller to generate energy = catabolism


Generate energy in presence of O2 = aerobic respiration

What is catabolism?

Mitochondria breaking down larger molecules into smaller ones to generate energy

What is aerobic respiration?

Mitochondria generating energy in the presence of O2
What is the structure of the mitochondria?


2 membranes


-Smooth outer membrane


-Highly folded inner membrane


--Cristae


Fluid filled space in between


-Mitochondrial matrix


-Contains DNA, ribosomes, & enzymes

What cells would have a lot of mitochondria?


Muscle & nerve cells
What types of cells contain mitochondria

they all do :)
Where are chloroplast found?
Only in plant organelles

What are the classes of plant structures?


Plastids


-Amyloplasts


-Chromoplasts


-Chloroplasts

Where are chloroplasts found?


Store chlorophyll & function in photosynthesis


In leaves, other green structures of plants in eukaryotic algae

What is the structure of chloroplasts?


2 membranes


-Stroma = internal fluid-filled space


--DNA, ribosomes, & enzymes


--Thylakoids = membranous sacs where ATP is made


--Grana = stacks of thylakoids

What are the functions of chloroplasts?


Photosynthesis


Generate ATP & synthesize sugars


-Transform solar energy into chemical energy


-Produce sugars from CO2 & H2O


Semi-Autonomous


-Moving, changing shape, & dividing


-Can reproduce by pinching in two

How are mitochondria & chloroplasts different?

Organelles not part of endomembrane system


Grow & reproduce


-Semi-autonomous organelles


Proteins primarily from free ribosomes in cytosol & a few from their own ribosomes


Own circular chromosomes


-Direct synthesis of proteins produced by own internal ribosomes

What are the functions of vacuoles & vesicles

Little "transfer strips"

What are the types of vacuoles?


Food vacuoles


Contractile vacuoles


Central vacuoles

What is the function of food vacuoles

Phagocytosis, fuse with lysosomes

What is the function of contractile vacuoles

In freshwater protists, pump excess H2O out of cell

What is the function of central vacuoles
Found in many mature plant cells
What are the functions of vacuoles in plants?


Storage:


Stockpiling proteins or inorganic ions


Depositing metabolic byproducts


Storing pigments


Storing defensive compounds against herbivores


Selective membranes controlling what comes in or goes out

What are peroxisomes?


Other digestive enzyme sacs in both animals and plants that break down fatty acids & sugars


-Easier to transport & use as energy sources


Detoxify cells


Produce peroxide

What are the elements of the cytoskeleton?


Centrioles


Microtubules


Microfilaments


Intermediate Filaments

What is the structure of the cytoskeleton?


Structural support by maintaining shape of the cell and providing anchorage for organelles


Motility through cell locomotion (cilia flagella)


Regulation by organizing structures & activities of cell

What are the functions of the centrioles?


Cell division in animal cells


Guide chromosomes in mitosis

What are three types of fibers?


Microfilaments (actin filaments)


Microtubules


Intermediate filaments

What are microfilaments?


Two protein chains loosely twined together


Movement like contraction, crawling, "pinching"

What are microtubules?


Largest of the cytoskeleton elements


Facilitate movement of cell and materials within the cell


What are intermediate filaments?


Between the size of actin filaments & microtubules


Very stable- usually not broken down

What are centrosomes?


Region surrounding centrioles in almost all animal cells


Microtubule-organizing center


-can nucleate the assembly of microtubules


Animal cells and most protists have centrioles -pair of organelles


Plants and fungi usually lack centrioles

What is endosymbiosis theory?


Mitochondria & chloroplasts were once free living bacteria that were engulfed by ancestral eukaryote

What is an Endosymbiont?


cell that lives within another cell (host)


As a partnership evolutionary advantage for both as one supplies the energy and the other supplies raw materials and protection

What are the four types of cell to cell interactions?


Tight junction


Anchoring junction


Communicating junction


Plasmodesmata

What is a tight junction?

Connect the plasma membranes of adjacent cells in a sheet - no leakage

What is an anchoring junction?

Mechanically attached cytoskeleton of neighboring cells (desmosomes)

What is a communicating junction?

Chemical or electrical signal passes directly from one cell to an adjacent one (gap junction, plasmodesmata)

What is plasmodesmata?

Occurs in plant cells


Specialized openings in their cell walls


Cytoplasm of adjoining cells are connected


Function similar to gap junctions in animal cells

What is diffusion?


2nd law of thermodynamics governs biological systems

What happens in the diffusion of two solutes?

Each substance diffuses down its own concentration gradient, independent of concentration gradients of other substances
What are the types of diffusion?

Movement from high to low concentration


Movement from low to high concentration

What is passive transport?


Move from high to low concentration


No energy needed

What is passive transport?


Movement of molecules through the membrane in which no energy is required


Molecules move in response to a concentration gradient


Diffusion is movement of molecules form high to low concentration & will continue until the concentration is the same in all regions

What is facilitated diffusion?


Globular proteins act as doors in membrane


-channels to move specific molecules through cell membranes


Move from high to low concentrations through a protein channel


-passive transport


-no energy needed


-facilitated = with help

What is active transport?


Globular proteins act as ferry for specific molecules


-Shape change transports solute from one side of membranes to other > protein "pump"


"costs" energy


Cells may need molecules to move against concentration situation


need to pump against concentration


protein pump


requires ATM (energy)

What are the types of endocytosis?


Pinocytosis


Phagocytosis


Receptor-mediated endocytosis

How does phagocytosis work?

Fuse with lysosome for digestion
How does pinocytosis work?

Non-specific process

How does receptor-mediated endocytosis work?

Triggered by ligand signals
How does exocytosis work?


Discharge of materials out of the cell


Used in plants to export cell wall material


Used in animals to secrete hormones, neurotransmitters, and digestive enzymes

What are the different types of cell membranes?


Carbohydrates


Proteins


Nucleic acids


Lipids

What are the cellular membranes have 4 components?


Phospholipid bilayer


Transmembrane proteins


Interior protein network


Cell surface markers

What is the phospholipid bilayer?

Flexible matrix, barrier to permeability

What is the transmembrane proteins?

Integral membrane proteins

What are the interior protein network?

Peripheral or intracellular membrane proteins

What are cell surface markers?

Glycoproteins & glycolipids
What are phospholipids?


Structure consists of glycerol - a 3-carbon polyalcohol


2 fatty acids attached to the glycerol


-Nonpolar and hydrophobic


Phosphate group attached to the glycerol


-Polar and hydrophilic


Spontaneously forms a bilayer


-Fatty acids are on the inside


-Phosphate groups are on both surfaces

What are membrane proteins?


Proteins determine most of membrane's specific functions


-Cell membrane & organelle membranes each have unique collections of proteins


Peripheral proteins


Integral proteins

What are peripheral proteins?

Loosely bound to surface of membrane

What are integral proteins?


Span the lipid bilayer (transmembrane proteins)


-Nonpolar regions of the protein are embedded in the interior of the bilayer


-Polar regions of the protein protrude from both sides of the bilayer

What are membrane carbohydrates?


Play a key role in cell-cell recognition


-Ability of a cell to distinguish neighboring cells from another


-Important in organ & tissue development


-Basis for rejection of foreign cells by immune system

What are the various functions of membrane proteins?


Transporters


Enzymes


Cell-surface receptors


Cell-surface identity markers


Cell-to-cell proteins


Attachments to the cytoskeleton


What is the transmembrane domain?


Spans the lipid bilayer


Hydrophobic amino acids arranged in a helices

What is osmosis?

The diffusion of water from high concentration to low concentration of water across a semi permeable membrane

How does metabolism work?

Forming bonds between molecules through dehydration synthesis and anabolic reactions


Breaking bonds between molecules through hydrolysis and catabolic reactions

Organisms are endergonic systems so what do we need for energy?

Synthesis


Reproduction


Active transport


Movement


Temperature regulation

Catabolic reactions are also known as what?

Exergonic reactions

Anabolic reactions are also known as what?

Endergonic reactions

How does energy coupling work?

Uses exergonic reactions to fuels endergonic reactions

What kind of reaction releases energy?

Exergonic reactions by digesting polymers


Hydrolysis = catabolism

What kind of chemical reaction requires an input of energy?

Endergonic reactions through building polymers


Dehydration synthesis = anabolism

What is activation energy?

Breaking down large molecules requires an initial input of energy


Activation energy


Large biomolecules are stable


Must absorb energy to break bonds

The amount of energy needed to destabilize the bonds of a molecule is what?

Activation energy

How do you reduce activation energy?

Catalysts


Reducing the amount of energy to start a reaction

What are the different concentrations of water when dealing with diffusion?

Hypertonic


Hypotonic


Isotonic

How do enzymes work?

Biological catalysts


Proteins (&RNA)


Facilitates chemical reactions by increasing the rate of reaction without being consumed, reduce activation energy, don't change free energy released or required


Required for most biological reactions


Highly specific- thousands of different enzymes in cells


Controls reactions

What is a substrate?

Reactant which binds to enzyme


Enzyme-substrate complex: temporary association

What is a product of an enzyme?

End result of reaction

What is sucrose in an enzyme + substrates

Enzymes breaks down sucrose


Bonds to sucrose & breaks disaccharide into fructose & glucose

What is DNA polymerase as an enzyme substrate product?

Enzyme builds DNA


adds nucleotides to a growing DNA strand

What is the lock and key model?

Simplistic model of enzyme action


Active site:


Enzymes catalytic center


Pocket or groove on surface of globular protein


Substrate fits into active site

What is the induced for model?

3D structure of enzymes fits substrate


As substrate binds, enzyme changed shape leading to a tighter fit


-"conformational change"


-bring chemical groups in position to catalyze reaction

Specificity of enzymes

Reaction specific


Each enzyme is substrate-specific due to fit between active site & substrate

What enzymes are named for reaction they catalyze?

Sucrase breaks down sucrose


Processes breaks down proteins


Lipases break down lipids


DNA polymerase builds DNA


Pepsin breaks down proteins (polypeptides)

What factors affect enzymes?

Enzyme concentration


Substrate concentration


Temperature


pH


Salinity


Activators


Inhibitors

What is a hypertonic solution?

More solute, less water

What is enzyme concentration?

Effect on rates of enzyme activity


As enzymes go up the rate of reaction goes up


Reaction rate levels off, substrate becomes limiting factor, not all enzyme molecules can find substrate

What is substrate concentration

Effect on rate of enzyme activity


As substrate goes up so does the reaction rate


Reaction rate levels off all enzymes have active site engaged, enzyme is saturated, maximum rate of reaction

How does temperature affect enzymes?

Effect on rates of enzyme activity


Optimum T


-greatest number of molecular collisions


-human enzymes = 35•-40•C (body temp 37C)


Increase beyond optimum T


Increased agitation of molecules disrupts bonds


-H, ionic = weak bonds


Denaturation - lose 3D shape


Decrease T


Molecules move slower


Decrease collisions

How does pH affect enzymes?

Effect on rates of enzyme activity


Protein shape (conformation) -attraction of charged amino acids


pH changes


-changes charges (add or remove H+)


Disrupt bonds, disrupt 3D shape


Most human enzymes = pH 6-8


Depends on localized conditions


Pepsin (stomach) =pH3


Trypsin (small intestines) = pH8

How does salt concentration affect enzymes?

Protein shape


Salinity changes


Enzymes intolerant of extreme salinity

What are activators that affect enzymes?

Cofactors and coenzymes

What are cofactors?

Compounds which help enzymes


Non protein, small inorganic compound & ions


Bounds in enzyme molecule

How do coenzymes affect enzymes?

Non protein, organic molecules


-bond temporarily or permenantly to enzyme near active site


Many vitamins

What are inhibitors that affect enzymes?

Competitive


Non competitive


Irreversible


Feedback

How do inhibitors affect enzymes?

Regulation of enzyme activity


Other molecules that effect enzyme activity


Selective inhibition & activity

What is a hypotonic solution?

Less solute, more water

What are competitive inhibitors

Effect: inhibitor & substrate "compete" for active site


Ex. Penicillin blocks enzyme that batteries use to build cell walls


Overcome by increasing substrate concentration

How do non competitive inhibitors work?

Inhibitor binds to site other than active site


Allosteric site


Called allosteric inhibitors


Causes enzymes to change shape


Renders active site unreceptive

How do irreversible inhibitors work?

Inhibitors permanently bind to active site


Allosteric


Permanently changes shape of enzymes

How do inhibitors and activators work?

Regulatory molecules attach to allosteric site causing conformational (shape) change


Inhibitors keeps enzyme in inactive form


Activator keeps enzyme in active form

How does feedback inhibition work?

Regulation & coordination of production


Product is used by next step in pathway


Final product is inhibitor of earlier step


No unnecessary accumulation of product

How does cooperatively work?

Substrate acts as an activator


Substrate causes conformational changes in enzyme


-induced fit


Favors binding of substrate at 2nd site


Makes enzyme more active & effective

How does "fueling the economy" work?

Eat high energy organic molecules (food)


Break them down- catabolism (digest)


Capture energy in form cell can use


Need an energy currency as a way to pass energy around

What is an isotonic solution?

Equal parts water and solute

When managing water balance within a cell what happens when an animal cell is immersed in an isotonic solution?

Blood cells in blood


No net movement of water across plasma membrane


Water flows across membrane, at same rate in both directions


Volume of cell is stable

When managing water balance within a cell what happens when an animal cell is immersed in an hypotonic solution?

Animal cell immersed in hypotonic solution will gain water, swell and burst


Water continues to enter cell


To solve problem, specialized organelle, concentration vacuole


Pumps water out of cell= ATP


Plant cell -turgid

When managing water balance within a cell what happens when an animal cell is immersed in an hypertonic solution?

Animal cells immersed in this solution will loose water, shrivel & probably die


Salt water organisms are hypotonic compared to their environment


They have to take up water & pump out salt


Plant cells - plasmolysis = wilting

What are aquaporins?

Water moved rapidly into & out of cells


Evidence that there were water channels

What is osmoregulation?

Water balance vs. habitat


Freshwater- hypotonic to body fluids


Water flow into cells & salt loss


Saltwater- hypertonic to body fluids


Water loss from cells


Land- dry environment


Need to conserve water


May also need to conserve salt