Cathy-Chymotrypsin Lab Report

Decent Essays
6.3 Results and Discussion

6.3.1 The influence of high pressure on the kinetics of α-chymotrypsin
The choice was determined by the fact that the catalytic mechanism as well as pressure stability of this enzyme is well established. α-chymotrypsin-catalyzed hydrolysis proceed according to the Michaelis–Menten mechanism. The initial process involves creation of a stable enzyme substrate complex ES, which is related to KM, afterwards activation of the ES^≠ and subsequent reaction steps occur, which are governed by the catalytic rate constant kcat. As a model peptide anilide substrate for hydrolysis SAAPPpNA (N-succinyl-L-alanyl-L-alanyl-L-prolyl-L-phenyl-alanine-p-nitroanilide) was selected. Reaction was observed as a function of time by monitoring increment of absorbance data at 410nm as a result of the p-nitroaniline product formation. Initial reaction rate vo was determined by converting raw absorption data units to moles per second using molar extinction coefficient of the substrate. Reaction rates were plotted as a function of substrate concentration to obtain Michaelis-Menten plot. Lineweaver - Burk plot was built to obtain kinetic parameters KM and kcat. The activation volume 〖ΔV〗^≠was derived from the slope of logarithmic Vmax dependence on pressure p. The raw data, Michaelis-Menten plot, The double reciprocal plot, i.e, Lineweaver - Burk plot and logarithmic plot of vmax (in relation to the rate at ambient pressure) as a function of pressure for the hydrolysis of the substrate by α-chymotrypsin are
…show more content…
With increasing pressure KM is nearly unchanged, indicating the binding volume, ΔVES≈0, in buffer solution, while kcat increases linearly, resulting a negative value of activation volume of reaction. The activation volume calculated from the slope of the curve in Figure 2d using equation 4.9 yields to -11±1 mL/mol that corresponds to a 2-fold reaction rate increase at a pressure

Related Documents

  • Superior Essays

    Purpose and Background Cells divide in two ways, mitosis and meiosis. Mitosis is used to produce cells that are genetically identical to the parent cell for growth, asexual reproduction, or repair after injury. Cells that are produced by mitosis are diploid, meaning that they have two complete sets of chromosomes, one from each parent. Meiosis is used to produce haploid cells that have only one set of chromosomes, a mix of chromosomes from both parents. Meiosis produces cells that are genetically unique from their parent cells.…

    • 1551 Words
    • 7 Pages
    Superior Essays
  • Improved Essays

    Interactive Question 7.2 Cite some experimental evidence that indicates that membrane proteins drift. A good form of experimental evidence is Fluorescence Recovery After Photobleaching, aka FRAP. In the FRAP process, membrane proteins are labelled with a green fluorescent protein, and part of the plasma membrane is “bleached” with a laser, causing them to lose their fluorescence. The part that was bleached will eventually become fluorescent again, as molecules drift in by diffusion.…

    • 853 Words
    • 4 Pages
    Improved Essays
  • Improved Essays

    Biology Unit 4 Lab Report

    • 543 Words
    • 3 Pages

    Biology 15 Lab # 4 Professor Passerini September 23, 2015 Scot Albert Lab #4 Questions 1a,b,c, 2, 3a,b,c, 4, 5a,b,c, 7, 11c, d, e, 12a,b ---------------------------------------------------------- 1- a-They are found primarily in the thylakoid membranes. b-No. Cyanobacteria do not have distinct nuclei.…

    • 543 Words
    • 3 Pages
    Improved Essays
  • Improved Essays

    The preparation for this lab should be done a week prior to examining each layer. The preparation consists of compiling the pond. To do so, obtain a small, disposable bowl with a cover. Using a thumbtack, poke holes into the lid of the container. Then, using black paper, wrap it 2/3 of the way around the bowl and proceed to the securing the black paper with aluminum foil.…

    • 360 Words
    • 2 Pages
    Improved Essays
  • Improved Essays

    Uncatalyzed Reaction Lab

    • 882 Words
    • 4 Pages

    The slope of the graphs would increase by a factor of 2.76 because the concentration of KI would be doubled, a lot like the difference between trial 1 and trial 3. The rate for each trial would be 2.76 times larger, because the concentration of the reactants would be different. This would not change k for the reaction, it just changes the concentration with respect to volume. rate =…

    • 882 Words
    • 4 Pages
    Improved Essays
  • Superior Essays

    Then, p-nitrobenzeneazide (0.16 g, 1.0 mmol) was added. The mixture was stirred at room temperature until complete consumption of the starting materials, monitored by TLC. The reaction mixture was diluted with 25 mL of water, cooled in ice, and extracted with CH2Cl2 (3x15 mL). The combined organic extracts were washed with brine, and dried (MgSO4). After removal of the solvent under reduced pressure, the residue was purified on silica gel with n-hexane–ethylacetate (8:2) yielding the target compound 8 as colorless powder (0.42 g, 79%); mp: 182-183…

    • 1222 Words
    • 5 Pages
    Superior Essays
  • Improved Essays

    Reaction Lab

    • 1809 Words
    • 8 Pages

    The rate of reaction was recorded in Table 1 and graphed in Figure 8. Table 1. Raw results of data Figure 7. Raw data presented in a graph, with the equation y= -0.0268x2 + 118721x +11.6.…

    • 1809 Words
    • 8 Pages
    Improved Essays
  • Great Essays

    After we did all three of the concentrations, we can conclude that all three of them increased their gas levels. However, 0% NaCl concentration increased the most because since it has no salt, it could work in its normal environment and the gas levels increased a lot and it was nowhere near getting denatured. In the 2% NaCl concentration, the gas levels increased, but not as much as 0% NaCl concentration because salt is known for denaturing enzymes over time, so as time went on the experiment, the enzyme starts getting denatured and you notice it in the end because the gas levels are increasing less and less. In the 10% NaCl concentration, the gas level increased, but not as much as 2% NaCl concentration because there is so much more NaCl, so the enzyme will get denatured even quicker and the gas level will increase less and less early on in the…

    • 1980 Words
    • 8 Pages
    Great Essays
  • Improved Essays

    Trypsin Enzyme Lab

    • 463 Words
    • 2 Pages

    The hydrogen atoms within the protein bonds disconnect, causing the protein to lose its shape. Thus it ability to intake substrates. Ph plays an important role in the enzyme rate of production due to it’s ability to alter electric charges. If Ph is too high or too…

    • 463 Words
    • 2 Pages
    Improved Essays
  • Improved Essays

    Apomyoglobin Lab Report

    • 1093 Words
    • 5 Pages

    In this research the effect that apomyoglobin’s history of secondary structure has on the denatured state of the protein will be determined through kinetics of the refolding reaction. The kinetics of the refolding of apomyoglobin that has been denatured from a predominantly alpha helical structure will be compared to the kinetics of the refolding of apomyoglobin that has been denatured from a predominantly beta sheet structure. Introduction Anfinsen (1973) found that proteins have the capacity unfold from their native state into a denatured form, and then refold back into their native state through a reversible process. A protein that has been denatured by urea…

    • 1093 Words
    • 5 Pages
    Improved Essays
  • Decent Essays

    This type of inhibition can be seen in Figure 7. Figure 3 then allowed us to create a Dixon Plot as seen in Figure 4. This Figure showed the largest source of error and actually had a negative slope. A positive slope was expected, thus making our calculation for -Ki rather difficult. –Ki represents the dissociation constant for the complexes created in this experiment (enzyme-substrate and enzyme-substrate-inhibitor) and using the x-intercept of Figure 4 we determined that this value was -1.8081849.…

    • 504 Words
    • 3 Pages
    Decent Essays
  • Improved Essays

    Figure 2 agrees with the introductory statement concerning that there is a specific pH which was optimal for enzymes due to a stable and preferred ion concentration. When…

    • 753 Words
    • 4 Pages
    Improved Essays
  • Improved Essays

    By calculating the rate of reaction and studying the effects of varied conditions on the reaction, a great deal can be learnt about the enzyme, including how the enzyme could be inhibited, the catalytic mechanism of the enzyme etc. One of the most well-known ways to look at enzyme kinetics is the Michaelis-Menton equation, which relates reaction rate (V) to concentration of substrate ([S]). Its equation can be used to work out the maximum rate of reaction of the system (Vmax) and the substrate concentration at which the reaction rate is half of Vmax (Km, also known as the Michaelis constant). Michaelis-Menton shows that the rate of reaction is dependent of the rate of formation of the enzyme-substrate complex and rate of formation of the product. This means that in the enzyme assay, the rate of reaction is dependent on the formation of NAD+ from NADH (Scopes, R.,…

    • 1627 Words
    • 7 Pages
    Improved Essays
  • Great Essays

    v = d[P]/(dt ) = Vmax[S]/((KM + [S])) Equation (a): Henri Michaelis-Menten HMM equation Firstly; Michaelis–Menten equation (1) describe the enzymatic reactions rate , the concentration present as (S ) substrate , maximum rate ( ) by the system, The Michaelis constant is the substrate concentration . E+S…

    • 1581 Words
    • 7 Pages
    Great Essays
  • Improved Essays

    The results were consistent with the hypothesis that if the pH environment was too basic or too acidic, the rate of enzyme activity would lessen until denaturation of the enzyme occurs. Thus, rejecting the null hypothesis. This was evident as the raw and processed data demonstrated a bell shaped curve with an optimum pH of 7. These results were similar to the theorised trend for catalase as it was predicted that the enzyme would demonstrate a bell shaped curve and would also denature at pH values of 1 and 14 with an optimum peak at the pH of 7. However, in consideration of both the error bars and the p values taken from the t-test, there were some inconsistencies between different trials of the same pH as well as inconsistencies between experimental values and theoretical values.…

    • 1472 Words
    • 6 Pages
    Improved Essays