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15 Cards in this Set

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What is the problem with packaging DNA?
Huge amount of information (DNA) must be condensed into a very small package. But, also needs to be accessible during interphase for transcription/replication.
Solution?
Package the DNA in four discreet levels. more compact during mitosis, less when being used to encode proteins.
What's going on with uncoiled proteins?
Uncoiled chromatin. They're still attached to histone proteins (still in level 1 packaging).
Level 1 of DNA packaging?
Unless the DNA is being read, it always remains wrapped around histomes making nucleosomes.
core of a nucleosome?
8 histone proteins (4 pairs). Histones have a large # of positively charged amino acids on their surface... attracts the - charged DNA (the phosphates in DNA give it a negative charge).
How does DNA wrap around the histones?
Wraps around the 8 histones twice, and is bound by a 9th histone, called H1.
Level 2?
Due to the H1, the layer pushes onto itself, creating a double layer. This is the state that most G0 DNA is found in. Called a coiled coil or 30nm fibre.
Level 3?
Happens in prophase and prometaphase. Looped Domains - Loops of 30 nm fibres attached to a protein scaffold in the chromosome during mitosis
Differences in level 3 between G0 cells and mitosis?
In a G0 cell the protein scaffold lines the inner surface of nuclear envelop and also some in nucleoplasm.
Level 4?
Fully condensed chromosomes. Loops of 30 nm fibres on a protein scaffold make up Looped domains which, when further coiled make up fully condensed chromosome
Differences between euchromatin and heterochromatin?
Euch -- The 'accessible' DNA is kept in a less compact form
Do simpler organisms have this divide?
No, they have no need. They need all their DNA. A more complex organism (like us), needs to preferentially store things.
How to differentiate euch from hetero in a cell?
Euchromatin looks less dense or more light coloured in a cell nucleus.
What does the nuclear lamina do? Nuclear matrix?
it's a chromatin organizer.

Matrix: Additional protein 'web'
throughout nucleus also
organizes.
Do prokary (and archea) package DNA similiarly?
No. Bacteria has large circular pieces for the genome that is condensed by physical twisting. Space is not as much of an issue for them .

Archea -- Have histosone like proteins, and something like nucleosomes, but nothing as complex, and that's as far as it goes.