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62 Cards in this Set

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Genetics

The science of heredity

Genes

Segments of DNA that code for functional products (usually proteins)

Genome

All genetic information in the cell



Carried on chromosomes, which are primarily made of DNA

DNA

deoxyribonucleic acid

RNA

Ribonucleic acid

Nucleotides

The building blocks of DNA

What do nucleotides consist of?

Phosphate groups


Pentose sugar


Nitrogenous base (nucleobase)

Structure of DNA

- double stranded helix


- polymer of nucleotides


- complementary base pairings held together by hydrogen bonds

Number of hydrogen bonds between A - T?

2

Number of hydrogen bonds between C - G?

3 (stronger)

What is the name of the sugar with numbered carbons in DNA?

Deoxyribose

How are the carbons in deoxyribose arranged in DNA?

The 5' carbon is attached to the phosphate group


The 3' carbon is attached to an alcohol group (OH)


The two strands of DNA are arranged anti-parallel to each other

Anti-parallel

One strand of DNA is oriented 5'-3' while the other is oriented 3'-5'

How do bacteria replicate?

Binary fission

Bacterial Chromosome

Bacteria have 1 closed circular chromosome


ccDNA

How long is the E. coli chromosome? How much of the cell volume does it take up?

- 4 million base pairs


- 1mm long


- 1000x longer than the cell


- 10% of the cell volume

Why does E.coli chromosome take up so little of the cell volume?

Supercoiling

What relaxes supercoiled E.coli chromosome?

The enzyme DNA gyrase

Where does DNA replication occur?

At the replication fork

How are new strands added in DNA replication?

In the 5' to 3' direction

What unwinds DNA for replication?

Helicase

What are the two strands of DNA?

Leading strand


Lagging strand

Replication of the leading strand

- RNA primase adds RNA primer to start


- DNA strand synthesized continuously


- Polymerized by DNA polymerase


- Semiconservative replication

Polymerized

The addition of complimentary bases to the parental strand

Semiconservative replication

New strands of DNA are made of one old strand and one new

Replication of the lagging strand

- DNA synthesis is discontinuous, being added in Okazaki fragments

What enzymes are required for replication of the lagging strand?

- RNA primase


- DNA polymerase


- DNA ligase

RNA primase

Makes RNA primer

DNA polymerase

- Extends primer


- digests RNA and replaces it with DNA

DNA ligase

Seals the nicks between Okazaki fragments

What type of replication does E.coli go through?

Bidirectional replication

Bidirectional replication

Involves 2 replication forks which both start at the Origin of replication and finish by meeting each other at Termination site

Central dogma of molecular genetics

DNA => transcription => RNA => translation => Protein

Transcription

Re-writing from DNA to RNA

Translation

Turning RNA into final product (protein)

Differences between DNA and RNA

1. RNA = single stranded


2. RNA's sugar is ribose, DNA's sugar is deoxyribose


3. In RNA, U binds with A. In DNA, T binds with A

Types of RNA

1. mRNA


2. rRNA


3. tRNA

mRNA

- Messenger RNA


- contains codons


- is the blueprint for protein

rRNA

- ribosomal RNA


- Make up ribosomes

What type of ribosomes are found in bacteria?

70S

tRNA

- transfer ribosomes


- transfer amino acids to the ribosomes for protein synthesis


- Ensures the correct amino acid is brought into the ribosome to add on to the chain


- contain anticodons

Anti codons

Complementary to codons found in mRNA


Found in tRNA

In what direction does transcription occur?

5' to 3'

Describe the process of transcription

- One DNA strand is used as a template to form a complimentary strand of mRNA


- RNA polymerase recognizes and binds to the promoter site


- The promoter directs RNA polymerase where to transcribe but is not transcribed itself


- RNA polymerase synthesizes mRNA until it reaches the terminator site


- RNA polymerase leaves the DNA strand and mRNA is released

Terminator site

Marks the end of the DNA

Nucleotide triplet code for amino acids

3 nucleotides code for one amino acid

Codons

Three bases that code for a particular amino acid

How many different amino acids are incorporated into proteins?

20

How many base codes are found in a codon?

3

How many potential bases exist?

4 (UAGC)

How many possible combinations of bases exist?

64

List 2 characteristics of genetic code

1. Degenerative


2. Universal

Degenerative

Repetitive - different codons code for the same amino acid

Stop codons

Codons that terminate translation


AKA nonsense codons

How many stop codons are there?

3

Translation

The process of making a protein from an mRNA template

Steps of translation

1. Attachment


2. Initiation


3. Elongation


4. Termination

4

Attachment

- mRNA attaches to the ribosomes at the 5' end


- small and large subunit come together

Initiation

Begins when ribosome hits start codon


Ribosome can hold 2 tRNAs

P site

In the middle of the ribosome


Holds the growing polypeptide chain

Elongation

- New amino acids are added at the A site as peptide bonds are formed and the polypeptide chain gets longer


- Old tRNAs are pushed to the E site where they are ejected

Termination

- Translation of protein is completed when stop codon is reached


- the release factor comes in and the complex falls apart, releasing the polypeptide chain (which eventually folds into a mature protein).