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23 Cards in this Set

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Protein

Size
Number of amino acids in the primary sequence determines the size
Oligopeptide - 3-10 amino acids
100 amino acids is a protein
Proteins cn be even up to 2000 amino acids in length
Oligopeptides are too small to form a true tertiary or quarternary structure, although they can fold a little
Protein

Function
The shape of a protein determines its function
Proteins pushed outside of their optimal temperature and pH denature and stop functioning
Proteins

Types
Fibrous
Fibrous Proteins
Structural proteins
They are insoluble fibers
Don not have a tertiary structure
Usually trihelical structures held together by disulfide covalent bonds - 3 strands braided together

Ex: keratin - found in hair and nails, and the outside of the epidermis
Fibrous Proteins

Keratin
The protein conformation is an alpha helix
Alpha helix looks like a coiled telephone cord
Each amino acid in the cord is related to the next by a 1.5 angstrom rise in the alpha helix
Fibrous Proteins
A second type of protein conformation found in the silk protein fibroin and strands of a spider's web is the beta cornformation called a Beta pleated sheet
Fibrous Protein

Collagen
Collagen displays a helical conformation, but not an alpha helix
Collagen's basic unit is tropocollagen which is 3 braided strands - 2 are similar and one is different
Types of Collagen
Type I
Type II
Type III
Type IV
Type I Collagen
Most common
Found in skin, tendon, bone, and cornea of the eye
Type II Collagen
Found in fibrocartilage such as the menisci (knee) and intervertebral disks
Type III Collagen
Found in fetal cardiovascular tissue
Type IV Collagen
Component of basement membrane which helsps to anchor simple epithelial cells
Protein Structure

Globular Proteins
Have tertiary and quarternary conformation
They are soluble, spheroid, compact structures
Ex: Enzymes, antibodies, hemoglobin, myoglobin
Enzymes
Enzymes are biological catalysts
They lower the activation energy required for a reaction
They increase the rate of reaction
Highly specific - 1 enzyme exists for each chemical reaction in the body
They are affected by pH and temperature - have optimum ranges
Enzymes
Composed of a protein portion and a non-protein portion
Protein part is called the apoenzyme
Non protein part is called the coenzyme
The apoenzyme and coenzyme represent the holoenzyme which is the functional enyme entity
Coenzymes are organic; if it is inorganic (like a metal), it is called a cofactor
Enzyme Reactions
Reactants (substrate) bind to the active site of the enzyme and interact to yield the product
Cofactors and coenzymes must bond to the enzyme before the substrate
Coenzymes are commonly from vitamins
see pic pg. 10 and 11
Nucleic Acids
DNA and RNA
Store and process information at the molecular level
Made up of purines and pyrimidines
DNA is a double stranded helix - makes up chromosomes and genes
Purines
Adenosine
Guanine
Pyrimidines
Cytosine
Thymine (only in DNA)
Uracil (only in RNA)
Nucliec Acids
Nucleic acids are chains of nucleotides
A nucleotide consists of a sugar, a phosphate, and a nitrogenous base
Nucleotides
Building blocks of nucleic acids
Sugar:
deoxyribose (DNA) or ribose (RNA)deoxyribose lacks oxygen
DNA bases - adenine, thymine, cytosine, guanine
RNA bases - adenine, uracil, cytosine, guanine
ATP
Adenosine triphosphate
High energy compounds
Cellular energy is stored in high energy bonds
Adenosine diphosphate (ADP) becomes ATP through phosporylation
ATP
Adenine bonds with ribose and phosphates
see pic pg. 14