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68 Cards in this Set

  • Front
  • Back

Apoptosome

A molecule that facilitates Apoptosis (programmed cell death).



Cytochrome C (Pink) binds to the protein Apaf-1 (shown in blue and magenta), causing it to assemble into a seven-fold ring. The caspases are then activated by binding to a ring of CARD domains (magenta) on the assembled apoptosome.

p53 Tumor Suppressor (Part 1)

Guardian of the Cell


DNA - binding domain

p53 Tumor Suppressor (Part 2)

Cell Types

Prokaryotes and Eukaryotes

Cell Theory History


- Robert Hook

1665 - Built first microscope



Coined the term Cellulae - Cell (observed thin slices or cork)

Cell Theory History


- Antonie Van Leeuwenhoek

Developed superior lens - living cells - blood, sperm and single-celled organisms.

Cell Theory History


- 1700 AD to until 1825 AD

Unproductive time period

Cell Theory History


- 1830

Improved lenses with better magnification were invented - resolution improved.

Cell Theory History


- Robert Brown

Coined the term Nucleus.

Cell Theory History


- Schwann

Animal cartilage cells - fundamental similarities.

Cell Theory History


- Schleiden

Plant Cells

The Cell Theory (Part 1)

Cell Theory proposed by Theodore Schwann and Rudolf Virchow:


1. All organisms consists of one or more cells.



2. The cell is the basic unit of structure.



3. All cells arise only from the preexisting cells



Cell is the basic unit of structure and reproduction for all organisms

Cell Theory (Part 2)

Cells have the characteristics of life:



–Order


–Regulation (internal)


–Growth & development


–Energy utilization


–Response to environment


–Reproduction


–Evolution



(O.R.G.E.R.R.E.)

The Branches of Cell Biology

Cytology



Biochemistry



Genetics

Cytology

One of three branches of Cell Biology.



(cyto-means cell) –cell structures and cytological events/activity.

Biochemistry

Once of three branches of Cell Biology.



Understanding of cellular functions.

Genetics

One of three branches of Cell Biology



Genetic information, DNA, Genes, Genomes.

Cell Biology Timeline

Micrometer (Visual)

Cell Biology


- Units of Measurement (Part 1)

Micrometer (μm) – Micron – One millionth of a meter – 10^-6



Bacterial cells – Few microns



Plant and animal cells – 10 to 20 times larger

Cell Biology- Units of Measurement (Part 2)

The Nanometer (nm) – the unit of choice for molecules and subcellular structures. Too small for light microscopes.



nm – One billionth of a meter (10-9m)



1000 nm = 1 μm



μm - One-millionth of a meter (10-6m)

Cell Biology- Units of Measurement (Part 3)

Molecular dimensions of macromolecules also measured in...



Angstrom –(Å) – (10-10m) or 0.1 nm

Nanometer (Visual)

Resolution Comparison (Part 1)

Resolution Comparison (Part 2)

Microscopes

(Lowest to highest resolution)


- Light


- Phase Contrast


- Differential interference Contrast


- Fluorescence


- Confocal


- Electron

Light Microscope (lowest/simplest)

Good to view membrane bound structures or organelles.



e.g. Nuclei, mitochondria, chloroplast.

Phase-Contrast


&


Differential Interference Contrast


Microscopes

Based on refractive index - Amplify and enhance changes in the phase of transmitted light

Fluorescence Microscopy

Coupling of proteins to fluorescent dyes. Light emitted throughout the specimens only.



–Two or more dyes. - Two or more macromolecules. Protein, RNA, DNA.

Confocal Scanning

Laser beam illuminate a single plane of the specimen.

Digital Video Microscopy

Video cameras and computers – Image intesification.

The first microscopes....

The first microscopes were simple, consisting of a single lens (one magnifying lens).

Compound Microscopes (Part 1)

- Two magnifying lenses.



- A source of light.



- Condenser (Lens that focuses the rays of light to a single point on the object).



- Works by passing visible light through a specimen.

Key Characteristics Compound Microscopes

Magnification - ability to make a sample appear larger than it actually is in real life.



Resolving Power - a measure of how close two things can be to each other before they appear as one.

Resolving Power

Distinguishing magnified objects clearly.



- the ability to distinguish 2 adjacent points from one another


- the human eye can separate 2 objects that are no closer than 2 mm apart.



With the highest power, the maximum revolving power of the light microscope is 2μm.

Microscope Magnification

Two Lenses


- Objective lens (4X - 100X)


- Ocular lens (usually X10)



Total Magnification = (objective×ocular)


(e.g., 10X times 40X = 400X magnification)

Electron Microscope

Base on refractive index. Amplify and enhance changes in the phase of transmitted light.



Various techniques


•Negative staining


•Gold Shadowing


•Freeze fracturing


•Freeze itching

Two Types of Electron Microscopes

Scanning Electron Microscope (SEM)


- 3D views of subjects surface



Transmission Electron Microscope (TEM)


- views internal structure of thinly sliced subjects.



-Ultramicrotome - tool used to slice


subjects incredibly thin (20-100 nm)

Sample of SEM image

Sample of TEM image

Sample of Brightfield (Unstained) image

Sample of Brightfield (Stained) image

Sample of Fluorescence image

Sample of Phase Contrast image

Sample of Differential Interference Contrast Image

Sample of Confocal Image

Biochemistry - Friedrich Wöhler, 1828

German Chemist who synthesized Urea, a biochemical substance, from inorganic molecules.



Nonliving vs Living World

Biochemistry - Louis Pasteur

Activity of living organism connected to certain biological processes.



- fermentation of sugar into alcohol by living yeast cells.

Biochemistry - Eduardo and Hans Buchner

Biological process (fermentation) can take place in exact in vitro.

How to identify metabolic pathways.

Characterization of metabolic pathways occurs via the use of radioactive isotopes.



- H³, C¹⁴, P³², etc.

Centrifugation

Analytical technique to isolate subcellular structures and macromolecules.



–Density gradient centrifugation.


–Differential centrifugation.

Chromatography

Isolation and purification of subcellular on the basis of size, charge, and affinity of specific molecules and functional groups.

Electrophoresis

Electric field - separation of molecule based on mobility.



–Depends on charge and size.



•Proteins – Polyacrylamide


•DNA and RNA – Agarose and Polyacrylamide

Mass Spectrometry

Identifies the identity of proteins. Dependant of the mass of the fragments of the molecule.

Genetics - Gregor Mendel 1866

Principles of segregation and independent assortment of Hereditary factors or Genes.

Genetics - Walther Flemming, 1880.

Identified chromosomes.


&


Cell Division or Cell Mitosis

Who revisited Mendel's studies?

Hugo De Vries, Ernest Von Tschermak, and Carl Correns.

Genetics - Johanne Friedrich Miescher, 1869.

Nuclein from Pus and Salmon sperm.

Genetics - Walter Sutton

Chromosome theory of heredity.

Genetics - Oswald Avery, MacLeod, McCarty, 1944

DNA - Genetic material.

Genetics - Beadle and Tatum

Studies in Neurospora “One gene-one Enzyme”.

Genetics - Watson and Crick, 1953

Double Helix structure of DNA.

Contemporary Branches of Genetics

•Recombinant DNA


•DNA sequencing


•Bioinformatics


•Genomics


•Proteomics


•Metabalomics

The Physical Science Strand

Assists in determining the biophysical properties of biological molecules and reactions!

Hypothesis

Most tentative but testable.

Theory

Critical evaluation of hypothesis using a variety of approaches.

Law

Thoroughly tested and proven hypothesis.

Scientific Method Visual