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205 Cards in this Set

  • Front
  • Back

Food is composed of...

large complex molecules (polymers) that cannot be absorbed

The function of digestion is...

to transform polymers into absorbable small molecules

Small molecules are absorbed...

in the small intestine by epithelial cells

Digestion is regulated by...

coordinated secretion of fluids, electrolytes and enzymes

Food is mostly degraded by...

Digested enzymes

Chewing allows...

ease of swallowing and increases surface area

Saliva is helpful because...

it lubricates and binds to food making slippery bolus (chyme) and initiates starch digestion

starch digestion is initiated by

enzyme alpha-amylase

gastric acid has

-a pH of 2


-sterilized food


-denatures/unfolds proteins

protein digestion is initiated by...

pepsin in the stomach

Digestive enzymes are produced...

in the pancreas and entet the small intestine via the pancreatic duct

Pancreatic juice contains...

-digestive enzymes


-sodium bicarbonate, neutralizes stomach acid

The liver produces...

bile, made of bile acids which solubolize lipids making them accessible to be cleaved by enzymes

Most metabolites are absorbed...

in the small intestine

Metabolites are only absorbed by cells called...

intestinal epithelial, brush border, intestinal lining, enterocyte or intestinal mucosa

the surface of the small intestine is made up of...

the duodenum, jejunum and ileum

intestinal epithelia have this enzyme...

endopeptidase and aminopeptidase which furthrr degrade peptides into amino acids

Intestinal surface enzymes...

digest disaccharides into monosaccharides

In order to be absorped most nutrients need...

-dedicated transport proteins


-energy

once inside the enterocyte, nutrients enter bloodstream through...

hepatic portal vein

once inside the enterocyte, fatty acids 12 carbons or longer...

move through the lymphatic system to the left subclavian vein

The lower part of the small intestine...

mostly reuptakes bile acids and some vitamins like B12

the large intestine is inhabited by...

trillions of beneficial bacteria called gut flora

gut flora are able to...

-synthesize vitamins like folic acid/B9


-catabolize tough polymers we can't which are absorbed in colon epithelium

the large intestine finishrs absorbing..

water and electrolytes

Lipid-soluble hormones bind to...

intracellular receptors which up- or down-regulate transcription

water-soluble hormones and neurotransmitters bind to...

surface cell receptors, which transduce signal by using 2nd messengers

the 3 hormones that are key regulators in metabolism are...

insulin, glucagon and epinephrine

The function of insulin is to...

-promote glucose uptake by cell to store as glycogen or triacylglycerols


-promote buildup of fats and proteins, their use as energy source is inhibited

Glucagon has greater effect on...

the liver

Muscle cells are affected by which chemical signal...

epinephrine

Glucagon and epinephrine have...

similar metabolic effects and opposite of insulin

the well-fed state promotes

insulin and storage of energy and glucose

enzymes stimulated by glucagon and epinephrine are active when...

in their phosphorylated state

the width of a cell membrane is...

50 angstroms, made of glycoproteins, glycolipids, proteins and lipids

Hydrophobic tails of cellular membrane are located...

in the apolar core

hydrophobic integral components of membrane are...

locked into the plane of membrane but can diffuse laterally

membrane patches are...

separated from other fluid membrane areas because of unique protein and lipid compositions such as:


-protein-protein complexes


-lipid rafts


-caveloae


-pickets and fences

fatty acid tails be less fluid if they have...

-single, saturated bonds


-long tails


-cholesterol due to reduced phospholipid movement

cholesterol impacts membrane fluidity 2 ways...

-reduces fluidity due to reduced phospholipid movement


-resists solidification at low temperatures, keeps membrane liquid

Lateral diffusion occurs...

readily in the lipid part of the membrane bilayer

Transverse diffusion occurs...

-when a lipid diffuses from one surface to the other and is very rare spontaneously


-helps keep asymmetey of membrane

Flippases are...

-enzymes that need ATP


-move PS and PE from OUTER LEAFLET to Inner Leaflet

Floppases are...

-ATP dependent enzymes


-move CHOLESTEROL, PC and SPHINGOMYELIN from INNER to OUTER Leaflet

Scrambleases are...

-calcium dependent enzymes


-randomize lipids, degrading the asymmetry

Movement of molecules across membrane depends on...

-MOSTLY the charge of molecule


-then the size of molecule

Due to the hydrophobic core...

lipids/hydrophobic molecules easily transverse the membrane

Gases, small uncharged polar molecules (urea, ethanol) can...

freely diffuse across membrane

water can diffuse across membrane...

only partially

Glucose, Ions and charged polar molecules (amino acids, ATP, G6P) cannot...

pass the membrane passively

Selective membrane permeability is...

the regulation of passage through the membrane

the 4 main mechanisms of membrane transport are:

sinples diffusion, passive transport through channels, passive transport using carriers and active transport

the simplest membrane transport is...

unassisted diffusion of solutes

Examples of lipid-soluble molecules that easily pass membrane are...

steroid hormones, drugs, O2 from respiration, and CO3 from expiration

Random diffusion results in...

equal concentrations of solute on both sides of membrane, no matter how great the initial difference

The easiest way for water-soluble molecules to travel across the plasma membrane...

is through channels

Channels are...

-selective, only certain solutes travel through pore


-passive, need no external energy only concentration gradient

Selectiveness of membrane channels is due to...

-diameter of pore, acts as a sieve


-amino acid side chains of pore which discriminate solutes

Membrane channel transport is..

-fast


-unidirectional


-uses concentration and chemical gradients

Channels are mostly used for...

-Charged ions (e.g. Na+)


-water

Transporters are different from channels because...

-they bind directly to and move the substance across

The activity of a transporter is...

-measured by the same kinetics applied to enzymes


-affected by competitive and noncompetitive inhibitors

Transporters are also called...

-are also called carriers, permeases, translocators, translocases and porters

Passive-mediated diffusion/facilitated diffusion is considered...

-slower than channels


-but still at moderate speed

GLUT (all glucose transporters except intestine) are an example of...

passive mediated transporters

Active transporters go against..

-concentration gradient from low to high


-and need energy (either ATP or electrical potential difference)

Primary active transport uses energy from...

ATP

Secondary active transport uses energy from...

-coupling with electrical potential difference, created by Na+/K+ pump

The two forms of secondary active transport are...

-antiport


-symport

Gap junction communication mechanism is...

-the simplest


-least used form


-directly connects cytoplasms of joined cells


-allows passage of small signaling molecules like Ca2+ and cAMP


-does not allow macromolecules

The G-coupled Protein Receptor structure is...

a single polypeptide, which has 7 alpha helices that span the membrane, known as serpentine receptors

GCPRs use...

2nd messengers for several cellular responses, like *activation of adenylate cyclase which catalyzes 2nd messenger cAMP

GCPRs consist of...

-the receptor


-G-protein (trimer: alpha, beta and gamma)

Prior to hormone binding, the receptor and G-protein...

do not interact


-alpha subunit of G protein is bound to nucleotide GDP

Upon hormone binding to receptor of GCPR...

conformational change in receptor, interacts with G protein -> conform. change in G -> exchange of GDP to GTP -> disassociation of alpha subunit (GTP still bound) -> finds partner i.e. adenylate cyclase which activates alpha if stimulatory ->signalling terminated by GTP hydrolysis (*self-timer activity)

The function of adenylate cyclase is...

to convert ATP into cAMP

Elevated cAMP levels...

activate PKA, by binding to regulatory subunits which frees up the catalytic portion of cell

Once activated PKA will...

phosphorylate many other proteins by either activating or inhibiting them

PKA often sets up...

a cascade of phosphorylation events

In GCPRs, bacteria will often...

target the alpha/G-protein complex

Cholera toxin works by...

catalyzing the ADP-ribosylation in the alpha sub when it's still bound to GTP -> maintains high cAMP levels -> electrolyte channels open -> ions and H2O escape into lumen and diarrhea

The pertussis toxin works by...

binding to G-inhibitory complex, remains locked in GDP-bound inactive state -> can't inhibit adenylyl cyclase -> unwanted increase of cellular cAMP

Enzyme-linked/fyrosine kinase receptors are associated with...

insulin and GF signals

Enzyme linked receptors activate..

the tyrosine kinase activity

In enzyme-linked receptors, insulin binds to the receptor leading to...

autophosphorylation of b subunits and phosphorylation of IRS-1 (insulin r sibstrates) -> IRS-1 phosphorylates adaptor molecule -> activates Ras, and MAP kinase signal pathway -> changes in gene transcription -> growth and differentiation

Synaptic communication is...

-immediate


-to a target cell


-short-lasting


-used by nervous system


the two types of hormones are...

-protein/peptides


-lipophilic/steroid

Examples of peptide hormones include...

glucagon, insulin, epinephrine and GH

two types of lipophilic hormones are...

-steroid (glucocorticoids, mineralocorticoids and sex hormones)


-non-steroid (thyroid hormone and vitamins)

Beta cells of islet of langerhans can...

-sense blood glucose levels

The beta cell does following steps before secreting insulin:

-glucose in cell is phosphorylated by glyconinase, then oxidated to form ATP


-more ATP inhibits K+ ion channels, which close


-cell depolarizes results in Ca2+ channels on membrane to open


-influx of EC Ca2+ stimulates insulin vesicles to fuse with membrane


-insulin secreted extracellularly, into blood

Catecholamine and epinephrine are produced by...

the adrenal glands

Glucagon is produced by...

alpha cells of islets of langerhans

Another name for epinephrine is...

adrenaline

Epinephrine results in...

increased heart rate muscle strength, blood pressure and sugar metabolism (aka flight or fight response), and is stimulated by exercise


All classes of hormones require...

plasma membrane proteins which:


1. prevent destruction by proteases


2. prevent hormone being filtered out = increased half-life

Plasma concentrations of thyroid and steroid hormones...

-are several 100x greater than in water


-because of carriers

the 4 stages of cell communication are:

1. signal recognition


2. reception


3. transduction


4. response

receptors have the following characteristics:

-receptors are specific to cell types


-are dynamic


-number can vary at different times


-can he blocked

Signal Trandsuction pathway...

-starts when the signal molecule binds to receptor, altering it


-creates a cascade of reactions for protein signals

the different signal responses include...

-turning on a gene


-actiavting an enzyme


-rearranging the cytoskeleton


-activating a transporter

Peptide hormone receptors are...

-located in the plasma membrane


-and have 2 domains (ligand-binding and effector domains)

the 2 domains of 1st messengers/peptide hormone receptors ensure...

-specificity to ligand


-generation of secondary messengers once ligand binds

Peptide Hormone Receptors have these characteristics:

-Proteins


-Highly Specific


-Saturable


-Non-covalent and reversible binding to ligand

The 3 groups of membrane receptors are:

-ion channel coupled


-G-protein coupled/serpentine receptors


-enzyme-coupled receptors

the main second messengers are:

-cAMP


-Ca2+


-IP3


-DAG


-cGMP

the effects of 2nd messengers are...

-activate protein kinases such as PKA, PKC and PKG


-affect intracellular Ca2+ levels (i.e. IP3, DAG, cGMP)


-can become receptor serine/threonine kinases


-can activate membrane-associated and intracellular tyrosine kinases

If IRS-1 activates PI3K...

-different pathway activated -> translocation of GLUT4 -> glucose uptake


-possibly involved with activating IREB, proteins that bind to IRE regulatory element in regulatory region of genes

Insulin receptor phosphorylation also activates the PLC pathway which...

activates phosphoprotein phosphatases -> glycolysis, glycogen sx, lipid sx (promotes storing energy)

Lipophilic hormones bind to...

nuclear receptors = ligand-dependent transcription factors

The 3 types of lipophlic receptors are...

1. steroids Rs


2. thyroid Rs


3. estrogen Rs

These lipophlic receptors interact with ligand in cytosol

type 1 = steroid


type 3 = estrogen

Prior to binding with ligand in cytosol, Type 1 & 3 Rs are...

occupied with heat shock proteins that disassociate once ligand binds

An example of receptor activation is...

Type 1 & 3 lipophilic Rs which are activated/bind in cytosol then R moves into nucleus

Type 2 lipophlic Rs are located...

in the nucleus, and therefore do not imteract with heat shock proteins


-they can bind to DNA in absence of ligand

Type 2 lipophilic/steroid-throid Rs have 3 parts...

1. ligand-binding domain


2. DNA-binding domain


3. transcriptional regulatory domain

TSH binds to GCPRs resulting in...

increased cAMP and PKA -> short-term increased secretion T3/T4

Thyroglobulin is...

iodinated and absorbed by vesicles of thyroid follicle cells -> fuses with lysosome -> degrades thyroglobulin -> releases T3/T4

Thyroxin-binding protein

is the carrier for T3/T4, which are hydrophic and undeliverable in plasma

Thyroid hormones bind to receptors in...

-> nucleus and -> ligand/receptor complex binds to TRE of DNA

T3/T4 have these effects on cells:

y


-influence BMR, growth, development more directly-affect gene expression for gluconeogenesis, lipogenesis, up-regulation protein sx


more directly-affect gene expression for gluconeogenesis, lipogenesis, up-regulation protein sx


-affect gene expression for gluconeogenesis, lipogenesis, up-regulation protein sx


protein sx


the pyruvate dehydrogenase complex converts...

pyruvate into acetyl CoA

Pyruvate is transported...

to the mitochondria via active transport

the first released CO2 occurs...

in the pyrubate dehydrogenase complex, carbon leaves in fully oxidized

Pyruvate DH complex is located only...

in the matrix more common in cardiac muscle and kidney cells

Pyruvate DH reaction is...

-irreversible because of large free energy


-occurs in 4 steps w/ intermediates -> COORDINATION + EFFICIENCY

the 3 enzymes involved in Pyrubate DH complex are:

1. pyruvate DH


2. dihydrolipoyl transacetylase


3. dihydrolipoyl DH

the 5 cofactors of PDH complex are:

1. thiamine pyrophosphate (Vit B1)


2. lipoamide


3. FAD (vit B2)


4. NAD+ (vit B3)


5. CoA (vit B5)

PDH complex is regulated...

-allosterically by ADH, acetyl CoA, long-chain fatty acids = inhibit


-enzymes: PDH kinase (allosterically regulated), PDH phosphatase

PDH is active...

when not phosphorylated, inactive when phosphorylated

PDH Kinase is...

-inhibitory


-turned on by: ATP, NADH, acetyl CoA


-turned off by: ADP, pyruvate, CoA

PDH Phosphatase is activated by...

Ca2+ allosterically

TCA inputs...

Ace CoA + 3 NAD + FAD + GDP + Pi + 2H2O

TCA outputs...

2 CO2 + 3 NADH + FADH2 + GTP + 2H+ + CoA

The purpose of the TCA is...

1. act as final common pathway of catabolism of nutrients, if O2 source is given


2. takes part in anabolic processes (gluconeogenesis, transamination, deamination and lipogenesis)

For TCA, the liver is the only tissue...

where all anabolic reactions occur to a significant extent

Per turn of TCA cycle...

-2 Carbon atoms enter (acetyl CoA)


-2 Carbon atoms released (CO2×2)


-4 redox rxn: 3 hydride/6 electrons to NAD+, 1 hydride/2 electrons to FAD


-1 GTP formed


ATP total: 12 ATP/ace CoA

In the TCA cycle, oxygen...

is not needed directly, but is NECESSARY so that NAD+ and FAD are regenerated

In TCA, the DH enzymes

-are most important for regulation


-produce reduced coenzymes

In the 1st step of TCA oxaloacetate and ace CoA...

combine in a very energetically favorable rxn (G=-31 kj/mol)

Succinate DH is...

-involved with TCA


-converts/oxidizes succinate to fumerate


-reduces FAD -> FADH2


-in the INNER MITO membrane and directly linked to ETC

Promoters for the TCA are:

-supply of acetyl CoA


-NAD+ and FAD for DH rxn, which are terminally oxidized


-ADP+Pi


-O2


Conditions that disrupt TCA are...

lack of:


-oxygen flow


-ADP


-source of reducing agents

the 3 most important regulatory DH enzymes are...

-citrate synthase


-isocitrate DH


-alphaketoglutarate DH

Intermediates of the TCA are...

Citrate


Isocitrate


Ketoglutarate


Succinyl-CoA


Succinate


Fumerate


Malate


Oxaloacetate


(Citrate Is Kreb's Starting Substrate For Making Oxaloacetate)

The combination of electron transport and oxidative phosphorylation is...

terminal oxidation in the mitochondria

electron transport is...

specialized electron carriers transferring energy-rich electrons from reduced co-enzymes (NADH, FADH2) to oxygen

In the ETC H+ are pumped from..

against their concentration gradient


-mitochondrial matrix into inter-membraneous space

Oxidative phosphoration is...

when H+ from inter-memb space flow back into mitochondrial matrix, generating ATP

Redox rxn occurs when...

electrons are transferred from electron donor (reductant) to electron acceptor (oxidant)

The electromotive force (E0) is..

-the capacity for electron donor to give up its electrons to its acceptor


-aka oxidation-reduction potential in Volts

The sequence of electron transfer begins with...

redox pairs that lose electrons more easily (bigger, more negative E0 force)

The sequence of electron transfer ends with...

redox pairs that have greatest ability to accept protons (biggest, most positive E0 potential)

In redox terms catabolism is ... and anabolism is...

catabolism = oxidative


anabolism = reductivr

In the ETC, NADH oxidation involves the following complexes...

I, III, IV

In the ETC, FADH2 oxidation involves the following complexes...

II, III, IV

The ETC consists of...

-4 large enzyme complexes (I-IV)


-2 electron-transferring molecules: Coenzyme Q and Cytochrome c

The ETC Complexes contain...

-redox enzymes, coenzymes and metal ions

3 of the 4 complexes contain...

iron-sulfur (Fe-S) as iron is readily oxidized/reduced

In order to work properly, the ETC needs this from food...

-Vitamins (NAD, FAD, FMN)


-Minerals (Fe, Cu)

Complex I has the following enzymes/molecules...

-NADH DH/NADH-Coenzyme Q Reductase


-Co-enzyme Q

The following rxns occur in Complex I...

1. NADH -> NAD+ + H+ + 2e-


2. Q+ 2e- + 2H+ -> QH2


3. 4H+ (matrix) -> 4H+(inter-membrane)



Net = NADH + Q + 5H+(matrix) -> NAD+ + QH2 + 4H+(inter-membrane)

Complex II has the following enzymes...

Succinate DH/Succinate CoQ Reductase

The net reaction for Complex II is...

Succinate + Q -> fumerate + CoQH2

CoQH2 results from...

FADH2 produced in TCA from succinate DH -> FADH2 reduces CoQ -> CoQH2

Complex II, is unique in that the following does not occur...

pumping of protons from matrix into membraneous space

the P/O ratio is...

-the amount of ATP produced from 2 e- moving through ETC


-dependent on # of H+s which return via ATP synthase

It is thought the oxidation of NADH...

produces more ATP than FADH2

cytochrome c can only...

hold 1 electron, so CoQH2/2 Cyto C

Net rxn for Complex III is...

CoH2 + 2 cyto c (Fe3+) + 2H+ (matrix) -> CoQ + 2 cyto c (Fe2+) + 4H+ (intermembrane)

cytochrome c is the only...

-water-soluble cytochrome

the role of cyotchrome c is to...

transfer electrons from complex III -> complex IV

Complex IV is also known as...

Cytochrome C Oxidase

For each Cyto C...

2 H+s are pumped into inter-membrane space

The net rxn for Complex IV is...

4 Cyt c (reduced) + 8H+(matrix) + O2 -> 4 Cyt C (oxidized) + 2H2O + 4H+ (cytosol)

The electron flow from Fe-S clusterd to Q can be...

-inhibited by chemical compounds


-examples include: amytal, rotenone

Amytal is...

a barbituate that disrupts transfer of electrons in complex I, targeting FMN -> CoQ

Rotenone is...

an insectide from a plant/antibiotic/myxithiazol which inhibits electron transfwr from Fe-S clusters to Q, blocking oxidative phosphorylation

Cytochrome c is inhibited by...

Cynanide and carbon monoxide

Cyanide is especially potent, fast-acting and dangerous because...

it binds to Fe3+ in heme of cyto c oxidase (IV) -> oxygen can't bind to enzyme and accept electrons

The chemiosmotic hypothesis first suggested...

the ETC generated a proton gradient/pH gradient/membrane potential that provides the proton-motive force which is used to synthesize ATP

The F0 portion of F1F0 ATPase makes...

the membrane permeable to protons so they ca flow back into the matrix

The F1 portion of F1F0 ATPase contains...

the ATPase and ATP sx occurs on F1 surface

the function is ATP/ADP translocase is...

to shuttle ATP out of mitochondria and bring in ADP

the ATP/ADP translocase uses this trnasport system

antiport system, ecchanging ATP for ADP

the ATP/ADP shuttle is considered...

electrogenic (-1), consuming energy to exchange ATP for ADP

the 2 inhibitors for ATP/ADP shuttle are...

atractyloside (Mediterranean pine thistle poison) and bongkrekic acid (mold from fermented coconut consumed in SE asia)

Phosphate carrier imports...

H2PO4- into mitochondria, with symport of H+ (electroneutral but alters proton gradient)

In brown adipose tissue the protons from the gradient...

-are uncoupled from ATP synthase


-flow through UCP-1

UCP-1 (thermogenin) creates...

proton leak, which doesn't capture energy of proton flow back into matrix -> energy is released as heat

the dissipative proton pathway is...

activated when core body temp falls -> relases hormones -> triggers release of free fatty acids -> acitvate UCP-1

2,4 dinitrophenol (DNP)...


-uncouples ETC from OxPhos


-used for weight loss -> too dangerous

the respiratory control or acceptor control is...

the regulation of rate of OxPhos from ADP level

ETC is tightly coupled to...

phosphorylation of ADP

In active muscle tissue high ADP concentration is needed...

to meet ATP demands of muscle

ATP has what effect on TCA?

decreases TCA because ATP inhibits DH enzymes

Ischemia is...

restriction in blood supply, causing shortage of oxygen to tissues

In addition to oxygen depletion, ischemia results in reduced...

availability of nutrients and inadequate removal of wastes

In an ischemic state, without oxygen the cell compensates by...

increasing anaerobic glycolysis -> increase lactic acid -> decrease cellular pH -> cell dies

Anabolism is this type of redox...

reductive (since agents are being oxidized)

Catabolism is this type of redox...

Oxidation since agents are being reduced

All of these metabolic processes occur in the mitochondria...

-B-oxidation


-Ketogenesis


-ETC


-part of urea cycle

Enzymes activated by insulin are active in...

their non-phosphorylated form

The storage pathways all promoted by insulin are...

-glucose uptake in muscle and adipose tissue


-glycolysis


-glycogenesis


-protein synthesis


-lipogenesis

Energy use pathways promoted by epinephrine and glucagon are...

-Gluconeogenesis


-Glycogenesis


-Lipolysis


-Ketogenesis


-Beta-ox