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26 Cards in this Set

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What are the building blocks of proteins

Amino acids

The three-dimensional structure of protein is strongly influence by

Chemical structure of amino acids

One unpopular feature of amino acids is that they are ___________?

Important intermediates in metabolism

Which isomer is normally found in proteins

L-isomer

When fully protonated a simple mono-amino mono-carboxylic ∞-amino acid is what type of acid?

Diprotic acid

Non-polar amino acids are all_______?

Hydrophobic

_________&_________ are non polar amino acids found buried or immersed in globular protein

Phenylalanine and tryptophan

P&T

Proline has its side chain (R) bonded to it's backbone nitrogen as well, it is called an______ acid

Imino

List all non polar amino acids

Glycine, Alanine, Valine, Leucine, Isoleucine, Methionine, Phenylalanine, Tryptophan, Proline.

_______ is phenylalanine with an added OH group. It is polar and slightly acidic. It can play an important catalytic role in the active sites of some enzymes.

Tyrosine

List all polar amino acids

Serine, Threonine, cysteine, Glutamine, Asparagine, Tyrosine.q

An amino acid, which is not too polar and also capable of forming di-sulphide bridge via sulphur bonds is called _______?

Cysteine

Histidine play an active role in __________________ which explains why it is always found in active sites.

Mechanism of enzymes

________ is responsible for the formation and maintenance of tertiary(folded) structure of many protein

Di-sulphide bridge

_______ is known for forming di-sulphide bond

Cysteine

Glutamate and aspartate confer a _______ charge on protein where they are present?

Negative(acidic)

______ is important in the formation of tertiary (folded) structure in protein

Di-sulphide bridge

_______&______ have pk of about 10, are always positively charged at neutral pH?

Lysine and arginine

_______ plays an important role in catalytic mechanisms of enzymes which explains why it is always found in many active sites

Histidine

All amino acids are alpha amino except________?

Proline

All amino acids are chiral except_________?

Glycine( the simplest amino acid)

At pH of 7.0 ___,____&____ test positive (Dextrtrotary) to optical activity

Ala, Ile and Glu(glutamate) etc.

At pH of 7.0 ___,____&____ test negative (levorotary) to optical activity

Phe ,leu, trp

All amino acids absorb in?

Infrared region except Phe, Trp and Tyr which absorb in UV

_______ is characteristic of each protein residue and it's high resolution measurement can be used to explain the three dimensional structure of protein

NMR spectra

Non-essential amino acids are synthesized invivo? T or F

T