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100 Cards in this Set

  • Front
  • Back
Salmonella


GS: GNR


Morph: Clear on MAC, with black center on HE/XLD


Oxidase: negative


ONPG: negative


H2S: positive


Motile


LDC: positive


Found in poultry, typhoid fever, bacteremia

Helicobacter pylori


GS: curved, slender, GNR


Growth: nonselective media @ 37 in Campy incubator. Doesn't grow at 42. Slow growing


Urease positive


Rarely cultured. Rapid urease tests on gastric biopsy, urea breath test, PCR, serology.


Gastritis, duodenal & peptic ulcers. Risk for gastric carcinoma.


Morganella morganii


GS: GNR


Oxidase: negative


Lactose non-fermenter


Indole: positive


Motile


ODC: positive


MR: positive


Citrate: negative


PD: positive++


Urease: positive++


H2S: negative


VP: negative


Nosocomial, UTI, Wounds

Neisseria lactamica


GS: GNDC


Morph: will growth on Thayer-Martin, resembles N. meningitidis but smaller.


Glucose: positive


Lactose: positive


Maltose: positive


ONPG: positive


Normal respiratory tract of children. Must differentiate from N. meningitides by ONPG.

Shigella


GS: GNR


Morph: Clear on MAC


Oxidase: negative


Citrate: negative


H2S: negative


Non-motile


MR: positive


Most communicable bacterial diarrhea.


Serotyping based on O antigens.


S. Dysenteriae=serogroup A, mannitol and ONPG negative


S. Sonnei=serogroup D, mannitol and ONPG positive, ODC positive

Edwardsiella tarda


GS: GNR


Morph: Clear on MAC, with black center on HE/XLD


Oxidase: negative


Citrate: negative


VP: negative


Urease: negative


Indole: positive***, diff from Salmonella


MR: positive


H2S: positive


Opportunistic, bacteremia, wounds. Lives in reptiles and freshwater fish. Positive indole differentiates from Salmonella.

Bacillus Species

Bacillus Species

GS: Large GPR w/endospores


Morph: Large, flat, beta hemolytic


Facultative anaerobe


Catalase: positive


Motile


Normal flora of skin

Corynebacterium Species

GS: Club shaped/beaded with irregularly staining granules, pleomorphic, palisading. No spores


Catalase: +


Non-motile


Bile esculin: -


Normal flora of skin

Listeria monocytogenes

Listeria monocytogenes

GS: Small GPR (almost coccal) may be in pairs or short chains. No spores.


Morph: small zone beta hemolysis. Small round, smooth, translucent.


Facultative anaerobe.


Catalase: positive


Tumbling motility “umbrella shaped”


Esculin hydrolysis: positive


Sodium hippurate: positive


AST: Susceptible to Penicillin, ampicillin, amino glycoside


Resistant to any cepham


Can grow at 4° C. Contaminated lunch meat/dairy. Neonates, elderly, alcoholics, Pregnant females.


Bacteremia and meningitis in immunosuppressed.

Bacillus anthracis

Bacillus anthracis

GS: Large, square-ended,GPR in singles/chains. Central spores not present in clinical samples.


Morph: Non-hemolytic, large, gray flat colonies with irregular margins (Medusa head)


Tube catalase: positive


Tube motility: Non motile


VF: capsule, exotoxins.


AST: Penicillin sensitive, CDC recommends ciprofloxacin or doxycylcine


Cutaneous and pulmonary infection.


B. Cereus=same but Beta hemolytic, motile

Staph aureus

Staph aureus

GS: GPC, clusters


Morph: opaque, smooth, white-golden, beta


Mannitol salt agar: yellow colony, yellow zone


Catalase: positive


Coagulase: positive


Latex Agglutination: positive


PYR: negative


AST: Yes, MRSA


VF: Clumping factor (id'd by slide coagulase), Coagulase, Fibrinolysin, Hyaluronidase, Beta-lactamase, exotoxins, protein A (blocks phagocytosis)


-normal flora of skin, opportunistic pathogen


Otitis media, sinusitis, pneumonia in immunocompromised. Eye, Ear, Wound infections, osteomyelitis.

Staph saprophyticus

Staph saprophyticus

GS: GPC in clusters


Morph: Opaque, smooth, raised, glossy white-yellow, non-hemolytic


Catalase: positive


Coagulase: negative


Bacitracin: Resistant


Novobiocin: Resistant


AST: Not routinely done


UTI in young women

Staph lugdunensis

Staph lugdunensis

GS: GPC clusters


Morph: Opaque, very white, non-hemolytic, can be beta.


Catalse: positive


Coagulase: negative


Latex Agglutination: positive but clumpy


Polymyxin: Resistant


Rapid ornithine: positive


Bacitracin: Resistant


PYR: positive


AST: Same guidelines as Staph aureus. ID to species level. May possess mecA


Seen in aggressive endocarditis septicemia, meningitis, skin and soft tissue infections, UTI and septic shock

Staph epidermidis

Staph epidermidis

GS: GPC clusters


Morph: opaque, smooth, raised, gray-white, non-hemolytic


Catalase: positive


Coagulase: negative


Bacitracin: Resistant


Novobiocin: Susceptible


VF: PGA capsule (adherence), Biofilm (inhibit antimicrobial peptides)


AST: Routine


Normal skin flora, UTI, meningitis, subacute bacterial endocarditis, wound, peritonitis, after surgery, prosthetic devices

Strep pyogenes

Strep pyogenes

GS: GPC in chains


Morph: large zone beta hemolytic, small, glossy, smooth


Catalase: negative


PYR: positive


Bacitracin: Sensitive


VF: M protein, lipoteichoic acid and Protein F, Erythrogenic toxin (scarlet fever), Streptolysin O, S, Hyaluronidase, DNase, NADase, Streptokinase


AST: Susceptible to Penicillin


Group A strep throat, acute glomerular nephritis, rheumatic fever, Erysipelas, Impetigo, Cellulitis, Scarlet Fever, Puerperal fever, Necrotizing fasciitis, TSS


Direct rapid antigen testing available for throat specimens.

Strep agalactaie

Strep agalactaie

GS: GPC chains


Morph: beta hemolytic


Chromagar: pink


Catalase: negative


PYR: negative


Na Hippurate: positive


Bacitracin: Resistant


CAMP test: positive


AST: Susceptible to Penicillin


Normal flora of vaginal tract. Invasive disease of the newborn, vaginitis, osteomyelitis

Strep pneumo

Strep pneumo

GS: GPC-lancet shaped in pairs


Morph: checker or mucoid, alpha hemolytic


Catalase: negative


Optochin: sensitive


Bile solubility: positive


Urine antigen test


AST: screen for penicillin resistance using KB disk. Use Mueller-Hinton with 5% sheep's blood incubated in CO2 If oxacillin zone <19, MIC test needed


Normal resp. flora in rare amounts. Must be present in nasopharynx and pt deficient in antibody.


Community acquired bacterial pneumonia, Otitis media, sinusitis

Bordatella pertussis

Bordatella pertussis

GS: small, faint GNCB


Morph: fastidious, Bordet=slightly beta, smooth, shiny, bisected pearls. Regan-Lowe=domed and shiny with pearl luster, BAP=no growth, MAC=no growth


Oxidase: positive


Nitrate: negative


Urea: negative


Non motile


VF: exotoxin, cell wall endotoxin, pertussis toxin causes systemic effects


Nasopharyngeal swab is specimen of choice


DFA, PCR


AST: not routine. Erythromycin drug of choice. Vaccination!


Whooping cough/Pertussis

Bordetella parapertussis

GS: faint GNR


Morph: Bordet/Regan=gray-brown, beta hemolytic. BAP=growth, MAC=variable.


Oxidase: negative


Urea: positive


Non-motile


Nitrate: negative


Mucous membranes, acute respiratory tract infection

Bordatella bronchiseptica

GS: faint GNR


Morph: Bordet/Regan=Large, flat, dull beta hemolytic. BAP=growth, MAC=growth


Oxidase: positive


Urea: positive


Motile


Nitrate: positive


DFA & PCR used.


Serology: four-fold rise in titer


Mucous membranes animals. Respiratory infection in animals. Wound, blood, respiratory infections in immunocompromised.

Francisella tularensis

Francisella tularensis

GS: Pale, very tiny GNCB


Morph: BAP=no growth, Choc=small, gray white, smooth at 48 hrs, MAC=no growth


Grows on Thayer Martin and BCYE


Oxidase: negative


Tube Catalase: negative or weak pos


Urease: negative


Beta lactamase: positive


Ferments glucose


Non-motile


Requires cysteine for growth


Incubate at 35C with 5-10% CO2 for 7 days


Ulcer formation at site of inoculation, enlargement of lymph nodes


CDC Category A


DFA, PCR, Serology testing


AST: not routine. Streptomycin/doxycycline drug of choice.


Direct contact with infected animals (rabbits). Common laboratory acquired infection.

Legionella pneumophila

Legionella pneumophila

GS: faint, short GNR


Morph: BAP and MAC=no growth. Choc=may grow slowly. BCYE=convex, grayish white, glistening, ground glass


yellow-green fluorescence with Wood's Lamp


Oxidase: weak pos


Catalase: weak pos


Gelatin: pos


Motile: positive by polar flagella


Organism exists in natural/man-made water systems and soil.


Urine Antigen Test common.


AST: Not routine. Macrolide drug of choice.


Community acquired pneumonia


Legionnaires: malaise, myalgia dry cough and fever. Fatal if not treated.


Pontiac fever: fever, headache, no pneumonia

Haemophilus influenzea

Haemophilus influenzea

GS: Pleomorphic tiny GNCB, Capnophilic, Fastidious


Morph: Requires both hemin and NAD. Choc=tannish, translucent, mousy odor. BAP=no growth, MAC=no growth.


Capnophilic (5-10% CO2)


Exhibits satellitism on SBA around NAD (V)


Catalase: positive


Oxidase: positive


Porphyrin: no fluorescence.


Non-hemolytic on horse blood.


VF: capsule


AST: Beta-lactamase testing. Ampicillin resistance developing. Must use Mueller-Hinton supplemented with X and V.


Respiratory infections (community acquired pneumonia in children and elderly), conjunctivitis, Otitis Media, normal flora in man


Treatment: Life-threatening: Cefotaxime/ceftriazone. Non-life threatening: Amoxicillin-clavulanate.

Haemophilus parainfluenzae

GS: GNCB


Morph: Requires V factor for growth


Porphyrin: red-orange fluorescence

Haemophilus ducreyi

GS: GNCB, school of fish


Morph: Requires X factor for growth. Choc=small, gray, yellow/tan. Hard to pick up


Painful genital ulcers



Stenotrophomonas maltophilia

Stenotrophomonas maltophilia

GS: GNR


Morph: pale yellow to lavender green color. No growth at 42


Oxidase: negative**


Catalase: positive


Motile**


LDC: positive


DNase: positive


Polymyxin: Susceptible


Glucose: oxidizer


Maltose: strong oxidizer


AST: Susceptible to trimethoprim-sulfamethoxazole, resistant to many abs


Respiratory infections, nosocomial infections, cystic fibrosis, not normal flora


Ammonia odor

Pseudomonas aeruginosa

Pseudomonas aeruginosa

GS: GNR


Morph: Spreading, flat, irregular edge, gray-green with metallic sheen MAC=clear


Glucose: oxidizer


Oxidase: positive


Catalase: positive


Growth at 42


ADH: positive


Nitrate: positive


Motile


Polymyxin: Susceptible


VF: Pili, endotoxin, exotoxin A, proteolytic enzymes, slime/capsule


AST: Resistance to common antibiotics. (ampicillin) Susceptible to aminoglycosides, some 3rd and 4th generation cephalosporins


COPD, Otitis externa, pneumonia, cystic fibrosis patients

Burkholderia cepacia

Burkholderia cepacia

GS: GNR


Morph: smooth, slightly raised, mucoid, strong earthy odor. MAC=punctate and tenacious, may be dark pink-red. OFPBL=yellow. PC=pink.


Glucose: oxidizer


Oxidase: weak positive


LDC: positive


Polymyxin: Resistant


Motile


AST: Resistant to aminoglycosides. Susceptible to trimethoprim-sulfamethoxazole.


Opportunistic for cystic fibrosis patients.

Acinetobacter

Acinetobacter

GS: plump GNR in pairs, GNCB


Morph: Translucent, convex. MAC=colorless/slightly pink, purplish


Oxidase: negative**


Catalase: positive


Nitrate: negative


Glucose: oxidizer or Intermediate


Nonmotile


AST: Resistant to variety of antibiotics. Susceptibility must be performed.


Normal skin/vaginal flora. Opportunistic, nosocomial infections of respiratory tract, UTI, wounds, blood.

Alcaligenes/Achromobacter

GS: GNCB


Morph: flat, thin, spreading, rough. Apple odor


Oxidase: positive


Glucose: oxidizer


Urease: negative


Motile


LDC: negative


AST: varies, must perform.


nosocomial infections, cystic fibrosis patients


Moraxella catarrhalis

Moraxella catarrhalis

GS: GNDC


Morph: smooth, opaque, gray-white, hockey puck


Catalase: positive


Oxidase: positive


DNase: positive


Nitrate: positive


Butyrate Esterase: positive


No growth on Thayer Martin


AST: Not routine, Beta lactamase testing (most are positive)


May be normal respiratory flora. Pneumonia, bronchitis in immunocompromised, otitis media, maxillary sinusitis

Neisseria gonorrheae

GS: GNDC


Morph: Choc=small, tan translucent


Chocolate & Thayer Martin, 2-8% CO2


Oxidase: positive


Carb: Dextrose positive


DNase: negative


Nitrate: negative


Butyrate: negative


Pro: positive


AST: Not routine. Beta lactamase testing


Gonorrhea, pharyngitis

Neisseria meningitidis

Neisseria meningitidis

GS: GNDC


Morph: bluish gray, smooth, convex, glistening on BAP. Choc=small, tan, convex.


Chocolate & Thayer Martin, 2-8% CO2


Oxidase: positive


Carb: Dextrose, maltose positive


Glut: positive


ONPG: negative


DNase: negative


Nitrate: negative


Butyrate: negative


VF: pili, capsules


AST: not routinely done. Beta lactamase testing.


Meningitis in close populations. Common laboratory acquired infection.

Nocardia

Nocardia

GS: Branching GPR, beaded


Morph: Aerobic growth, chalky, matte, velvety or dry and crumbly. Will grow on BAP, mycology media, LJ media.


Partially acid-fast positive.


Catalase: positive


sulfur granules


Mycetoma, lymphocutaneous infection, skin abscess, Pulmonary infection

Mycobacterium tuberculosis

GS: Does not stain, high lipid content. Appears GPR and beaded.


Acid-fast: red


Slow growing


Morph: LJ media: small, dry, rough, buff-colored. "rough and buff"


Tuberculosis


Found in water, soil, animals. Aerobic. Slow growing (high lipid content).


Niacin positive


Nitrate positive


Heat stable catalase negative


Primary, Latent, Reactivation of disease


AST: sent out, >1% of bacilli in test population resistant.


Treatment: multi-drug regimen. Long treatment (6-9 months)

Corynebacterium diphtheriae

Corynebacterium diphtheriae

GS: club-shaped, beaded, pleomorphic, palisading GPR


Morph: Plate to Loeffler's, Tellurite plate: black GPR. Brown halo around colony. BAP: white


Incubate 35C, CO2, 24-48 hours


Non-lipophilic


Catalase: positive


Non-motile


Glucose and Maltose fermenter


Urea: negative


Toxigenic: infected by beta-bacteriophage


Albert's stain: metachromatic granules on Loeffler media


Must demonstrate toxin production: guinea pig, ELEK, EIA, PCR for tox gene.


Treatment: antitoxin. Prevention: DPT immunization.


Disease of respiratory tract. Death by congestive heart failure.

Corynebacterium jekeium

Corynebacterium jekeium

GS: Pleomorphic, club-shaped in V forms GPR.


Morph: BAP: 48-72 hrs, 5% CO2, small, gray to white, non hemolyic


Lipophilic


Catalase: positive


Glucose: oxidizer


Sucrose: negative


Urea: negative


Nitrate: negative


AST: resistance to multiple antibiotics. Susceptible to vancomycin.


Immunosuppressed patients--septicemia, meningitis, pulmonary disease. Diphtheroid prosthetic valve endocarditis.

Mycobacterium bovis

Part of M. tuberculosis complex


Slower growing than M. tuberculosis


Morph: buff, small, smooth/rough


Primarily in cattle, can cause pulmonary disease in humans

Mycobacterium kansasii

Symptoms similar to M. tuberculosis.


Growth: 2-3 weeks at 37


Morph: rough centers with smooth edges.


GS: acid fast longer, thicker, more beaded.


Niacin negative


Nitrate positive.


Yellow to orange pigment production after exposureto light. Pulmonary disease.


DNA probes available.


Found in tap water.


Treatment: multi-drug regimen. Known resistance to pyrazinamide.

Mycobacterium marinum

GS: acid fast, long rods.


Growth: 5-15 days at 28-30 C


Morph: buff in dark, yellow in light


Niacin variable


Nitrate negative


Yellow to orange pigment after light exposure.


Skin lesions (swimming pool granuloma)

Mycobacterium gordonae

Produce pigment in both light and dark.


Urease negative


Rarely associated with disease. Found in tap water/soil.

Mycobacterium scrofulaceum

Produce pigment in both light and dark.


Cervical lymphadenitis in children.


Biochemical ID


Treatment: surgical incision and drainage.

Mycobacterium avium complex

GS: acid fast positive


Growth: 3-6 weeks at 37


Morph: vary from smooth, thin and transparent to rough. Nonpigmented or buff


Non photo-reactive


Niacin negative


Nitrate negative


Tellurite reduction positive


DNA probes available


Chronic pulmonary disease


Disseminated disease especially in AIDS.


Infection from inhalation or ingestion.

Mycobacterium fortuitum-chelonae complex

GS: acid fast.


Growth: Rapid grower, 3-7 days at 30 or 35


Morph: smooth to rough, may be filamentous. Nonpigmented to buff with/without light.


Arylsulfatase positive at 3 days.


Growth on MAC without crystal violet.


Skin/soft tissue, pulmonary disease


M. fortuitum: nitrate positive


M. chelonae: nitrate negative


Primarily found in surgical wounds or trauma.

Mycobacterium leprae

Causes leprosy.


Obligate intracellular parasite.


Will not grow on artificial media.


Diagnosis based on clinical presentation and acid fast stain of biopsy.

Beta-lactams

Inhibit cell wall synthesis


-Penicillins


-Cephalosporins (cefotaxime, ceftriaxone, ceftazidime)


-Monobactams (aztreonam)


-Carbapenems (imipenem, meropenem)


Beta-lactamase: hydrolyze the beta-lactam ring in antibiotics

Inhibit protein synthesis

Aminoglycosides

Inhibit protein synthesis

Macrolides

Inhibitions of folic acid synthesis

Sulfa compounds

Interfere with nucleic acid synthesis

Nalidixic acid/ciprofloxaxin


Levofloxacin/Quinolones/fluoroquinolones

Inhibit cell wall synthesis

Glycopeptides

Inhibit protein synthesis

Chloramphenicol

Inhibit protein synthesis

Tetracycline

Enterococcus

Enterococcus

GS: GPC in chains


Morph: small, grey, smooth


Catalase: weak positive


PYR: positive


Bile esculin: positive


Growth in 6.5% NaCl


Endocarditis, UTI, wound, nosocomial infections.


AST: Vanco resistant strains (incubate full 24 hours). Must do testing.


Resistance to aminiglycosides, beta-lactams, glycopeptides


When isolated from sterile sites use synergy screen.


Do beta-lactamase on blood and CSF.

Streptomyces

Streptomyces

GS: GPR, branching, chains


Morph: Aerobic growth, waxy, bumpy, velvety rugose, cream to brown-black.


Will grow on BAP, mycology, LJ


Aerobic


Acid-fast negative


Mycetoma

Actinomyces

Actinomyces

GS: Branching GPR


Facultative anaerobe, Molar tooth


Abcesses in mouth, lungs, GI tract. Lumpy jaw, subcutaneous infection. Mycetomas


Not acid fast

E. coli

E. coli

GS: GNR


Morph: Non-swarming, beta


EMB: metallic sheen


Oxidase: negative


Indole: positive


Citrate: negative


VP: negative


PYR: negative


Lactose fermenter


MR: positive


Rapid tests to detect toxin: EIA, PCR


Mac-Sorbitol: O157:H7 will grow clear.


Enterohemorrhagic produces shiga like toxin


Mechanisms of resistance: Beta-lactamase, ESBL, carbapenemase production


#1 agent of UTI


Klebsiella pneumoniae

Klebsiella pneumoniae

GS: GNR


Morph: mucoid, Pink on MAC


Lactose fermenter


Glucose fermenter


Oxidase: negative


Nitrate: positive


ODC: negative


LDC: positive


Indole: negative


Citrate: positive


VP: positive


Non-motile


PD positive (slow)


VF: large capsule


AST: Known resistance to ampicillin


Destructive pneumonia



Klebsiella oxytoca

Klebsiella oxytoca

GS: GNR


Morph: mucoid, pink on MAC


Lactose fermenter


Oxidase negative


Glucose fermenter


Nitrate positive


ODC: negative


LDC: positive


Indole: positive


Citrate: positive


VP: positive


PD positive (slow)


Non-motile

Citrobacter freundii

Citrobacter freundii

GS: GNR


Oxidase: negative


Lactose fermenter/variable


Glucose fermenter


Nitrate: positive


LDC & LDA negative


ONPG: positive


Motile


Produces H2S


KCN positive


ONPG positive*, diff from salmonella


LDC neg*


Nosocomial infections of respiratory, urinary, blood.

Serratia

Serratia

GS: GNR


Oxidase negative


Glucose fermenter


Nitrate: positive


Produces red pigment on SBA and MAC


Lactose nonfermenter


VP positive like Kleb, Entero


LDA/TDA negative


Nosocomial infection



Enterobacter cloacae

Enterobacter cloacae

GS: GNR


Oxidase negative


Nitrate positive


Glucose fermenter


Lactose fermenter


ODC: positive


LDC: negative


Indole: negative


Citrate: positive


VP: positive


Motile


Resistance to ampicillin and 1st generation cephalosporins


Opportunistic pathogen

Proteus mirabilis

Proteus mirabilis

GS: GNR


Morph: spreading


Oxidase negative


Glucose fermenter


Nitrate positive


Lactose Non-fermenter


Urease: positive++


H2S: positive


ODC: positive


Indole: negative


LDA/TDA: positive


Ampicillin: Sensitive


Resistant to nitrofurantoin and tertracycline


Burned chocolate odor

HACEK organisms

Haemopophilus parainfluezae


Aggregatibacter species


Cardiobacterium species


Eikenella species


Kingella species


Subacute bacterial endocarditis in blood cultures.

Brucella species

Brucella species

GS: small GNCB, faint but discrete. Can be mistaken for GPC.


Morph: non-pigmented, non-hemolytic, moist, convex, may take 48-72 hours.


Oxidase: positive


Tube catalase: positive


Urease: positive


Nitrate: positive


Glucose: oxidizer


Treatment: Doxycycline and rifampin


Hold in blood culture system 21 days.


Direct contact with infected animals.


Cause of brucellosis. Common laboratory acquired infection

Burkholderia pseudomallei

Burkholderia pseudomallei

GS: small, straight or slightly curved GNR


Bipolar staining, safety pins.


Poor growth at 24 hour.


Morph: white colonies on BAP. Nonpigmented, nonhemolytic, wrinkled >72 hours. Growth on MAC (trigger point) variable.


Oxidase: positive


Tube catalase: positive


Indole: negative


Tube motility: positive


Arginine: positive


Growth at 42C.


Melioidosis. Bone marrow, blood, tissue, urine, respiratory.

Yersinia pestis

Yersinia pestis

GS: medium sized, plump GNR


Morph: pinpoint, gray-white, translucent on BAP. Small non-lactose fermenter on MAC. Grows at 25C. Older cultures: fried egg or hammered copper.


Oxidase: negative


Tube catalase: positive


Indole: negative


Urease: negative


Tube motility: Non motile


Cause of plague. Transmitted by flea bite.

Burkholderia mallei

Burkholderia mallei

GS: faintly staining gram negative, straight or slightly curved rod with rounded ends. May be in pairs end-to-end.


Morph: smooth, gray, translucent at 48 hrs. Poor/slow growth.


Oxidase: negative


Indole: negative


Urease: negative


Tube motility: negative


Arginine: positive


No growth at 42C.


Cause of glanders.

Streptococcus bovis (Group D)

Gemella

GS: GPC pairs and chains, easily over decolorized


Morph: resemble strep viridans, alpha or gamma, anaerobe


PYR: variable


Vanco: sensitive


Glucose: non Fermenter


Bile esculin: negative


No growth in NaCl


Opportunistic. Endocarditis, septicemia, wounds, abscesses, respiratory.

Streptococcus viridans

Streptococcus viridans

GS: GPC chains


Morph: tiny, gray, domed, alpha hemolytic


Optochin: resistant


Bile soluble: negative


Bile esculin: negative


No growth in NaCl


LAP: positive


Most common cause of subacute endocarditis. Liver abscesses, bacteremia.

Bacteroides fragilis

Bacteroides fragilis

GS: GNR, pale staining, pleomorphic. Safety pin.


Morph: AnaBAP: non-hemolytic, white to gray, circular, smooth, convex. BBE: gray with browning medium.


KV: growth


Esculin hydrolysis: positive


Colistin: Resistant


Bile: Resistant.


Growth on KV agar.


Most common anaerobe isolated in lab.
Wounds, abcesses, bacteremia

Clostridium perfringens

Clostridium perfringens

GS: Large GPR, terminal or subterminal spores. "box cars"


Morph: double zone beta hemolysis. Rough, spreading


KV agar: no growth


Egg yolk: white, cloudy. Lecithinase positive.


Obligate anaerobe.


Litmus milk: stormy


Non-motile


Food poisoning: ingestion of entero-toxin strains. Beta and alpha toxins. Bloody diarrhea. Can be fatal. Treatment: Fluid replacement.


Gas gangrene: wounds. Release exotoxins, alpha toxin causes necrosis of issue. Treatment: amputation of dead tissue. Massive doses of penicillin. Hyperbaric oxygen.


Bacteremia.

Abiotrophia

Abiotrophia

GPC: GPC in chains


Nutritionally deficient


Non-motile


Requires Vitamin B6, pyridoxal to grow


Normal flora, endocarditis

Pediococcus species

Pediococcus species

GS: GPC pairs, tetrads, clusters


Catalase: negative


Morph: Resemble strep viridans. Can be alpha or gamma.


PYR: negative


LAP: positive


Vanco: resistant


Glucose: fermenter


Bile esculin: positive


Group D antigen positive**


Opportunistic pathogen.


Gemella

Gemella

GS: GPC pairs and chains, easily over decolorized


Morph: resemble strep viridans, alpha or gamma


PYR: variable


Vanco: sensitive


Glucose: non Fermenter


Bile esculin: negative


No growth in NaCl


Opportunistic. Endocarditis, septicemia, wounds, abscesses, respiratory.

Leuconostoc

Leuconostoc

GS: GPC in pairs and chains. Can be coccobacilli.


Morph: anabap Resemble strep viridans. Alpha or gamma.


Catalase: negative


PYR/LAP: negative


Glucose: fermenter


Vanco: resistant


Bile esculin: positive


Opportunistic: septicemia, wounds, CSF

Erysipelothrix rhusiopathiae

Erysipelothrix rhusiopathiae

GS: short gpr and long filamentous rods. No spores.


Morph: microaerophilic, non-hemolytic or alpha, pinpoint


Catalase: negative


Esculin hydrolysis: negative


Nitrate: negative


Urease: negative


Non-motile


"Test tube brush" growth pattern


H2S positive


Resistant to vancomycin


AST: Penicillins, cephalosporins, erythromycin, clindamycin.


In swine, direct contact with infected animal. Skin disease with intense pain (erysipeloid) Rare cases becomes serious: septicemia, endocarditis.


Relapses common.

Lactobacillus

Lactobacillus

GS: GPR, very pleomorphic. Long, slender in chains or short choccobacilli. No spores


Morph: Aerotolerant anaerobes. Pinpoint alpha-hemolytic to medium rough gray.


Catalase: negative


Sucrose: fermenter


Resistant to Vancomycin.


Rarely pathogenic. Rare cases of endocarditis and meningitis.

ESBL

E. Coli, proteus mirabilis, kleb species.


Resistance to extended spectrum cephalosporins (cefotaxime, ceftriaxone, ceftazidime), monobactams.


Clues: Azteronam and/or ceftazidime "I" or "R", yet other beta lactams "S"


Normal patterns of resistance not followed.


Aztreonam <27 or >2.


Cefotaxime (R) with cefotaxime/clavulanic acid (S)=confirmed ESBL

Carbapenemases

Screen Enterics for carbapenemase


"I" or "R" to one or more carbapenems. Also resistant to subclass III cephalasporins


Treat with colistin or polymixin

Inducible clindamycin resistance


(D-zone test)

Erthyromycin "R" and Clindamycin "S" staph or strep pneumo screen.


Flattened zone (D) between two disks indicates inducible clindamycin resistance.

Capnocytophaga

Vibrio vulnificus

GS: straight or slightly curved GNR


Morph: BAP: medium to large colonies that appear smooth, opaque, and iridescent with greenish hue. Mac: pink
TCBS agar: colony is green. Growth on MAC


Oxidase: positive


Glucose: fermenter


Lactose: variable


Sucrose: variable


ODC: variable


LDC: positive


Indole: positive


No growth in 0% salt


Variable growth in 6% salt


Intestinal, aquatic wound infections

Eikenella corrodens

Eikenella corrodens

GS: small, slender, GNR


Morph: tiny colonies at 48 hours. "Pits" the agar. Pale yellow pigment. Greening around colony. Bleach odor. No growth on MAC.


Aerobic. Requires hemin.


Oxidase: positive


Catalase: negative


Glucose: non-oxidizer


Nitrate: positive


Nonmotile


AST: Not routine. Treat with penicillin, 3rd generation cephalosporins, tetracycline, quinolones.


Normal flora of mouth, respiratory, GI tract.


Opportunistic pathogen. Dental, neck, abscesses, human bite wounds, septicemia, endocarditis.

Strep anginosus

Strep anginosus

GS: GPC chains


Morph: may be alpha, beta, or no hemolysis. If beta, twice the size of the colony. Honeysuckle or butterscotch odor.


Catalase: negative


Optochin: Resistant


Bile esculin: negative


May have A, C, F, G, or no Lancefield antigen.


Normal oral and GI flora.


Deep wound infection. Abscess formation in oropharynx, brain, peritoneal cavity.

Pasteurella multocida

Pasteurella multocida

GS: short, straight GNR


Morph: convex, smooth, gray, nonhemolytic. Musty or mushroom odor. No growth on MAC.


Oxidase: positive


Catalase: positive


Indole: positive


ODC: positive


Urease: negative


Penicillin: Very Sensitive


Glucose: fermenter (apple green)


Polar flagella


Wound infections (animal bites). Meningitis, brain abscess, abdominal abscess, septicemia, pulmonary infections.

Aeromonas

Aeromonas

GS: straight GNR


Morph: beta hemolytic, growth on MAC (NLF)


Lactose: variable


Inositol: non fermenter


Sucrose: fermenter


Oxidase: positive**


Glucose: fermenter


LDC: positive


ADH: positive


Indole: positive


Esculin: positive


Gelatin: positive


ODC: negative


Growth in 0% salt


No growth in 6% salt


Diarrhea, UTI, Wound infections, septicemia, osteomyelitis.

Plesiomonas

Plesiomonas

GS: pleomorphic GNR, singlels, pairs, chains


Morph: nonhemolytic* BAP, clear on MAC


Oxidase: positive**


Glucose: fermenter


Lactose and Sucrose: non fermenter


Inositol: fermenter


LDC: positive


ADH: positive


ODC: positive


Indole: positive


Dnase negative


Vp negative


Esculin: negative


Gelatin: negative


Growth in 0% salt


No growth in 6% salt


Found in fresh water. Gastroenteritis.

Vibrio vulnificus

Vibrio vulnificus

GS: straight or slightly curved GNR


Morph: BAP: mediumto large colonies that appear smooth, opaque, and iridescent with greenish hue. Mac: pink


TCBS agar: colony is green. Growth on MAC


Oxidase: positive


Glucose: fermenter


Lactose: variable


Sucrose: variable


ODC: variable


LDC: positive


Indole: positive


No growth in 0% salt


Variable growth in 6% salt


Intestinal, aquatic wound infections

Prevotella

Prevotella

GS: GNR in pairs, short chains


Morph: colonies turn black or fluoresce brick red under long-wave UV lights with age.


KV: growth


No growth on BBE


Oral, vaginal flora. Anaerobic infection of respiratory tract, abscesses in mouth, bites, UTI, osteomyelitis, bacteremia. Periodontal disease.

Porphymonas

Porphymonas

GS: GNCB


Morph: turn brown/black or fluoresce brick red.


KV: no growth


Normal flora of oral cavity, GI tract

Fusobacterium

Fusobacterium

GS: GN fusiform morphology.


Vanco: resistant


Colistin: susceptible


Kanamycin: susceptible


Will grow on KV


Indole: positive


Fluoresce chartreuse.


Normal flora of oral cavity, GI, genital tract.

Veillonella

Veillonella

GS: GNC


Morph: Anaerobe, weak red fluorescence under UV light


Catalase: positive


Nitrate: positive


Rare cases of osteomyelitis and endocarditis



Elizabethkingia meningoseptica

Elizabethkingia meningoseptica (chryseobacterium)

GS: thin GNR


Morph: growth on BAP, no growth on MAC


Oxidase: positive


Glucose: delayed oxidizer


Indole: weak positive


Nonmotile


Found in environment. NOT normal flora. Nosocomial and opportunistic pathogen. Neonatal meningitis and sepsis

Voges Proskauer reaction

Positive=red


Reaction of alpha napthol and diacetyl

Peptostreptococcus anaerobius

GS: GPC in chains


Morph: anabap small white gray. Sweet odor. Sensitive to SPS.


Normal flora mouth, GI. Infections of skin, soft tissues, gi tract, female genital tract, bones, joints, lungs, brain.

Finegoldia magna

GS: GPC clusters


Morph: anabap small colonies


Catalase negative


Indole negative


Resistant to SPS


Normal flora on skin. Most common isolated/pathogenic anaerobic GPC

Propionibacterium

GS: GPR, club shaped. Diptheroid-like. Anaerobe


Catalase positive


Indole positive


Most common anaerobe GPR.


Normal skin flora.

Lactobacillus

GS: pleomorphic, long, thin, non spore forming GPR.


Aerotolerant anaerobe. May resemble S. Viridans.


Catalase negative.


Normal flora of mouth, GI, vagina.


Produces lactic acid.

Campy jejuni

Curved GNR, "seagulls"


Grown on campy bap, slow growing


Darting corkscrew motility


Oxidase: positive


Catalase: positive


Hippurate hydrolysis: positive

Vibrio cholerae

GNR


Growth: TCBS--yellow colonies


Growth at 0% salt, 6% salt


Oxidase positive


Motile


Rice water stools. Serological ID with antisera to O antigen.


Notify public health.