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70 Cards in this Set

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Generation questions from

Observations

Propose tentative explanations

Hypothesis

First law of thermodynamics

Energy cannot be created or destroyed

Second law of thermodynamics

The degree of disorder in the universe tends to increase

Entropy

Central dogma

DNA -->Transcription --> RNA --> Translation -->proteins

What is evolution?

Change over time

3 different domains of life

Bacteria, archaea, eukaryotes

Isotopes

Atoms of the same element that have different numbers of neutrons

What is the top two elements of humans?

Carbon 47% , oxygen 30%

Covalent bond

Formed when two atoms share a pair of electrons in a molecular orbital

Polar covalent bonds

The bonds that link with a partial positive charge near the outer molecules and negative near the inner molecules

Non-Polar Covalent bonds

Between atoms with the same electronegativity

Ionic bonds

Between two ions that are attracted to each other

Hydrophilic

Love water

Hydrophobic

Hates water

Low pH

High concentration of protons

High pH

Low concentration of protons

Hydrogen bonds

Forms between two water molecules when partial + is attracted to partial -

Deoxyribose sugar

Only one OH

Ribose sugars

Two OH

Pyrimidine based

Cytosine, Thymine, Uracil

Purine Bases

Guanine, Adenine

Cytosine

A pyrimidine base with 3 hydrogen bonds

Thymine

A pyrimidine base with 2 hydrogen bonds

Uracil

A pyrimidine base for RNA with 2 hydrogen bonds

Guanine

A purine base with 3 hydrogen bonds

Adenine

A purine base with 2 hydrogen bonds

Phosphodiester bonds

Join adjacent pairs of nucleotides

Adenine interacts with

Thymine (DNA) or uracil ( RNA)

Adenine interacts with

Thymine (DNA) or uracil ( RNA)

Guanine interacts wkth

Cytosine

Peptide bonds

Join adjacent amino acids

Griffiths experiment

Pneumonia mice

Avery, Macleod, & mcCartys experiment

Virulent bacteria

What is replication?

Mutations, variations, evolution

DNA replication

Two-stranded structure allows the copying (replication) of information & separation into progeny cells

Nuceloside

No phosphate group

One phosphate group

Nucleoside monophosphate

Nucleotide nomenclature

1. Sugar 2. Base 3. Count phosphates

Nucleus acids are read from

5'-3' where 5' is phosphate group, 3' is hydroxyl group

5'-ATGGAGCTCGTATCA-3'

5'-TGATACGAGCTCTAC-3'

DNA is mostly (blank) charged

Negatively

Why do cells now use DNA?

RNA has an extra hydroxyl group & degrades fairly quickly

Why do cells now use DNA?

RNA has an extra hydroxyl group & degrades fairly quickly

Template strand

The 3'- 5' strand

Why do cells now use DNA?

RNA has an extra hydroxyl group & degrades fairly quickly

Template strand

The 3'- 5' strand

The non template strand

The coding strand

Promoter sequence of initiation

TATA box

Initiation of transcription is synthesized in

The 5'-3' direction by RNA polymerase

How transcription is regulation #1

General transcription features bind to the promoter & transcriptional activator proteins bond to enhancers

Regulation of transcription #2

DNA loops, everything is brought nice and close allowing for transcription to proceed

Bacterial promoter region is promoted by

Sigma factors

Primary transcript

The RNA transcript that comes of the DNA template strand

Eukaryotic primary transcript for RNA processing required

5' Cap, splicing (introns removed, exons joined), polyadenation

Exons

Regions of protein-coding sequences

Inteons

Non coding regions

Primary structure of proteins

Sequence of amino acids (alpha helix)

Secondary structure of proteins

Results from interactions of nearby amino acids (beta sheet)

Tertiary structure of proteins

3-D shape of a polypeptide

Quaternary structure of proteins

Results from interactions of polypeptide subunits

Hydrophobic amino avids

Inside folded proteins, go AWAY from water

Hydrophilic amino acids

Outside of folded proteins, interact with eachother

Ribosomes

Have a large subunit and small subunit (hamburger buns) contain exit, peptidyl, and arrival site

Codon

Each group of 3 adjacent nucleotides coding for a single amino acid

Reading frame

Where the ribosome begins reading

First base of the codon (5' end)

Pairs with the last base (3'end) of the anticodon

Translation initiation

Initiator AUG codon recognized, MET is the first amino acid in new polypeptide chain

Translation elongation

Successive amino acids are added to the growing chain

Translation termination

The addition of amino acids stop& the polypeptide chain is released from the ribosome