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118 Cards in this Set

  • Front
  • Back

moleules

atoms arranged in fixed ratios

compounds

elements combined together in fixed rations, held together by chemical bonds

orbital

Region of space that is occupied by electrons located around the nucleus of an atom

energy levels

Within the orbital. Also known as energy shells and are numbered as 123 excetera.

The further away an electron is from the nucleus

The greater the energy

Inert atoms

They have a complete octet sand are non active

Cation

Ion with a positive charge

anion

Ion with a negative charge

What determines the strength of covalent bonds

The electronegativity of each atom

Electronegativity

The measure of an atom's attraction to share electrons

Polar covalent bonds

A bond between two atoms. Made up of unequally shared electrons

Polarity

Partial positive or negative charge at the ends of a molecule

Electronegativity distance

Below 0.4 is nonpolar covalent.


before 1.8 is polar covalent.


After 1.8 it's an ionic bond

Intermolecular force

Force of attraction between two molecules

Van Der waals forces

Very weak attraction between two molecules or parts of molecules when they're close together. London Force, dipole dipole Force, hydrogen bonding

Water is the

Universal solvent. More substances dissolve in water than anything else

Properties of water

Special because it's size, shape, polar structure, and ability to associate with each other because of hydrogen bonding.


Hydrogen bonds between water constantly break and reform new positions.


The fluid property is created by the lattice it forms between the molecules

How is ice created

When the water lattice becomes a rigid crystalline structure

Specific heat

The amount of thermal energy required to raise the temperature of a given quantity of a substance by 1 degrees Celsius

Up until how many degrees does water stay liquid

0 to 100 degrees

Property of adhesion

Occurs between water molecules and other polar molecules

Cohesion

Create surface tension, which is the measure of how difficult it is to stretch or break the surface of a liquid

Hydrophilic molecules

Polar or charged molecules that are strongly attracted to water

Hydrophobic molecules

Nonpolar molecules that are not attracted to water

Why can cells in blood carry out the reactions they do

They are made up of water molecules which means they can dissolve thousands of solutes necessary for life

Autoionization

Process in which air molecules spontaneously dissociates into ions

What happens when water reacts with itself

Forms hydronium ions, h3o + oh, and hydroxide, oh -. There's an equal amount of each


When the concentration is altered acids and bases are created

When there's more hydronium ions

An acid is created

When there are more hydroxide ions

A base is created

What does the strength of an acid or base depend on

The degree to which it ionizes when dissolved in water. Strong acids and bases are completely dissociated in water, creating an aqueous solution

Hydrocarbon

Molecules that are made up of a carbon and hydrogen atoms. For example methane, CH4

Organic molecules

Molecules consisting of a carbon chain, with hydrogen and other atoms (nitrogen oxygen and sulphur) attached

Why can carbon form the backbone of large diverse molecules

Carbon's ability to form bonds like for covalent bonds

Why is carbon bonding unique

It has the ability to form four single covalent bonds but may also form double and triple covalent bonds

Is the lipid molecule a polymer

No but it is composed of subunits glycerol and fatty acid chains

Functional group

A group of atoms that affects the function of a molecule by participating in chemical reactions.


Usually strongly polar or ionic.


They form small reactive groups which allow organic molecules to undergo synthesis and dehydration

Hydroxyl group

Oh. Alcohol, ethyl alcohol

carbonyl group

=o, aldehyde, acetaldehyde

carboxyl group

(COOH) krganic acids, acetic acid

amino group

NH2, amino acids, alanine

phosphate

po4, nucleic acids, glyeraldehydes-3-phosphate

sulfhydryl

sh, cellular molecules, merceptoethanol

Dehydration and hydrolysis

H+ and O H - ions are gained or lost from organic molecules. Dehydration is the removal of water usually during the building of a larger molecule from smaller subunits.

Carbohydrates

Consists of carbon, oxygen, and hydrogen. Most common biomolecule on Earth. Needed by all living things, photosynthesis or cellular respiration

Function of carbohydrates

Primary energy source of the cells and also use as a structural component of cells and organisms

Monosaccharides

Made of six carbons and are isomers of each other. Consists of a single sugar unit. Building block for more complex carbs.

Types of monosaccharides

Glucose galactose and fructose

Triose

Monosaccharide with 3 carbons. Glyceraldehyde

Pentose

Monosaccharide with 5 carbons. Ribose

Hexose

Monosaccharide with 6 carbons. Glucose

Formula for simple sugar molecules

C6 h-12 o-6

Glucose appearance

A linear molecule but in the presence of water it becomes rings as the functional groups hydroxyl and carbonyl interact

Alpha glucose and beta glucose

When glucose forms a ring there's two possible Arrangements when the oah group attaches to the carbon deposition one. There are isomers of each other

Isomer

A molecule that has the same composition as another but a different arrangement of atoms

Alpha glucose

Starch

Beta glucose

Cellulose

Disaccharides

Created when two monosaccharides are bonded together through a dehydration reaction.

Types of disaccharides

Maltose lactose and sucrose

How is maltose created

When two glucose molecules form a glycosidic bond between the o h group on carbon position of one glucose and the o h group on carbon position for of another glucose

Glycosidic Bond

Bond between two monosaccharides

What is the linkage of saccharides determined by

The orientation of the o h group to the carbon position 1

Complex carbohydrates

Important energy storage and structural molecules, depending on the amount of monosaccharides that make up the chain

Energy storage versus structural complex carbs

Energy storage and chitin / cellulose

What are complex carbs made

Hundreds to thousands of monosaccharides linked together. An essential part of nutrition into valuable energy source

Macromolecules

Made up of many monosaccharide subunits bonded together glycosidic bonds through a dehydration reaction

Polysaccharide

Many linked monosaccharides. This is a polymerization reaction

Polymerization

Process in which small subunits are linked to form one large molecule

Types of polysaccharides

Cellulose which is structural,


starch which is an energy source in plants,


glycogen which is an energy source in animals from the digestion of starch,

Monomer

Small molecule that can bind chemically to other molecules

Polymer

Large molecule that is formed when monomers linked together chemically in a chain

Lipids

Nonpolar molecules composed mostly of carbon and hydrogen in some oxygen. Insoluble in water. Not polymers because they are not made of repeating subunits

Function of lipids

Secondary energy source for the cell and a structural component of cells, hormones, certain vitamins, immune response, isolation, and Waterproofing

Fatty acids

Molecule that consists of a carboxyl group and a hydrocarbon chain. They have a single hydrocarbon chain with the carboxyl on one end.


The carboxyl allows change interact with other molecules and gives it acidic properties

Fatty acid chain

Consists of four or more carbons in the hydrocarbon backbone. Most common forms have an even number of carbons ranging from 14 to 22

Saturated chains

Carbon bonded together by single covalent bonds

Unsaturated chains

Have one or more double covalent bonds between carbons making up the chain

Mono saturated chains

Have only one double covalent bonds in the chain

Poly saturated chains

Have many double covalent bonds

Fats

Made up of two molecules, glycerol and fatty acid chains.


Fatty acid chains bound to a glycerol group buy a dehydration synthesis reaction which forms an ester linkage. The carboxyl group of the acid reacts with the hydroxyl group of the glycerol molecule

Triglycerides

Three fatty acid chains linked to a glycerol group. Primarily energy source

Saturated fat

Lipid composed of unsaturated fatty acids with single Bonds in their hydrocarbon chain

Unsaturated fat

Lipid composed of unsaturated fatty acids with double Bonds in their hydrocarbon chain

Phospholipid

Lipid with two fatty acids and a phosphate group bonded to a glycerol group. Primary lipids in cell membranes. Hydrophobic and philic

Structure of phospholipids

The phosphate portion or head region is polar and hydrophilic. Fatty acid chains are nonpolar and hydrophobic. They make a bilayer cell membrane

Amino acids

A molecule that has a carboxyl group and an amino group. Serves as the monomer subunit of proteins

Amino acids

A molecule that has a carboxyl group and an amino group. Serves as the monomer subunit of proteins

What makes up an amino acid

Central carbon with a carboxyl group and an amino group attached at each end. The central carbon also has a radical group which leads to variation between Amino acids

How many types of amino acids are

There are 20 kinds. 8 are essential and 12 are not

Protein

Large molecule with many amino acid subunits that are joined by peptide bonds folded into a specific 3D shape

What do proteins do

They carry vital structural and functional roles. Also hormones, carry substances across membranes, recognition and receptor protein, on cell membranes, enzymes, antibodies

Peptide bonds

Covalent bond that links amino acids

Peptide

Chain of amino acids subunits connected by peptide bonds

Polypeptide

Peptide with more than 50 amino acids

Are proteins polymers

Yes they're made up of monomers amino acids subunits

How are amino acids bonded

Covalent bonds by dehydration

What is the process of amino acid bonding

The amino group, nh2, I want amino acid, in terminal, will form a bond with a carboxyl group, C terminal cooh -, of another amino acid

Denaturation

The loss of the structure and function of a protein. Can be caused by temperature and pH changes.


The protein is in active if the structure is changed and permanent if the bonds are broken

Nucleic acid function

Responsible for the synthesis of proteins. Also can transport chemical potential energy

DNA

Stores genetic information and is found in the nucleus

RNA

Communicates to the ribosome to produce a specific protein and is found in the nucleus and cytoplasm

What molecules can transport chemical potential energy

Adenine triphosphate and guanosine triphosphate. There is also a m p, NAD, and f a d

Nucleotide

The building block of nucleic acid. Consists of a 5 carbon sugar and nitrogenous base and one to three phosphate groups

Nucleotides are grouped into

Purines which are double rings and pyrimidines which are single ring

Purines

Adenine and guanine

Pyrimidines

Thymine cytosine and uracil

Structure of DNA and RNA

Poly nucleotide chains were a phosphate group is bonded to the 5 carbon of one sugar group in history carbon of another sugar group

Phosphodiester Bond

It's a link formed between nucleotides by a phosphate Bridge

DNA structure

Strands are in opposite directions and they're held together by hydrogen bonds between the nitrogenous base pairs.

Atom can form how many hydrogen

Two hydrogen bonds

How many hydrogen bonds can guanine form

3

How do enzymes speed up a chemical reaction

Enzyme lowers the activation energy required to break chemical bonds

Enzyme

Biological catalyst, usually A protein that speeds up a chemical reaction

Substrate

The substance that is recognized by and binds to an enzyme

Active sites

A pocket or Groove in an enzyme that binds its substrate

Induced fit model

A model of enzyme activity that describes how an enzyme changes shape to better accommodate a substrate. Enzymes temporarily attached to the substrate allow the reaction and then is released so it can happen again

Induced fit model long description

Enzymes only interact with the substrate at their active site. The groove is specific to the shape of the substrate. This model explains enzyme-substrate reaction. This stresses the bonds of the substrates enzyme substrate complex so the reaction occurs less energy. The transition state is when stuff happens

Competitive inhibition

When something blocks the enzyme activity

Noncompetitive inhibition

When something binds to the enzyme somewhere where it's not the active site but it changes the shape