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264 Cards in this Set

  • Front
  • Back
Which bugs do not Gram stain well?
These Rascals May Microscopically Lack Colour
Treponema (too thin), Rickettsia (intracellular), Mycobacteria, Mycoplasma (no cell wall), Legionella (intracellular), Chlamydia (intracellular)
Which bugs require the Giemsa stain?
Borrelia, Plasmodium, trypanosomes, Chlamydia
Which stain is used to diagnose Whipple's disease?
PAS (periodic acid-Schiff) - stains glycogen, mucopolysaccharides
What is the Ziehl-Neelsen stain?
Acid-fast stain. Used to identify acid-fast organisms, mainly Mycobacteria. Nocardia is also weakly acid fast
Which stain is used to detect the presence of Cryptococcus neoformans?
India ink - The background is stained while the organisms remain clear (negative stain).
Which stain is used to detect the presence of Legionella and fungi (eg. pneumocystitis)?
Silver stain
Which stain is used to detect amyloidosis?
Congo Red
What are some examples of obligate aerobes?
Nagging Pests Must Breathe
Nocardia, Pseudomonas aeruginosa, Mycobacterium tuberculosis, Bacillus
What are some examples of obligate anaerobes?
Can't Breathe Air
Clostridium, Bacteroides, Actinomyces
They lack catalse and/or superoxide dismutase and thus susceptible to oxidative damage.
Note: Aminoglycosides are ineffective because it requires O2 to enter bacterial cell.
What are some examples of obligate intracellular bugs?
Rickettsia, Chlamydia (can't make own ATP)
What are some examples of facultative intracellular bugs?
Salmonella, Neisseria, Brucella, Mycobacterium, Listeria, Francisella, Legionella
What are some examples of encapsulated bacteria?
Some Killers Have Nice Shiny Bodies
Strep pneumonia, Klebsiella pneumoniae, Haemophilus influenza B, Neisseria meningitidis, Salmonella, group B strep.
What bugs have a positive quellung reaction?
If encapsulated bug is present, capsule swells when specific anticapsular antisera are added.
Some Killers Have Nice Shiny Bodies
Strep pneumonia, Klebsiella pneumoniae, Haemophilus influenza B, Neisseria meningitidis, Salmonella, group B strep.
What are some examples of urease-positive bugs?
Particular Kinds Have Urease
Proteus, Klebsiella, H. pylori, Ureaplasma
What are superantigens?
Bind directly to MHC II and T-cell receptor simultaneously, activating large numbers of T cells to stimulate release of IFN-gamma and IL-2, thus generating a massive immune response which is not specific to any particular epitope.
Ex. S. aureus (toxic shock syndrome); S. pyogenes (Scarlet fever)
Which bug?
Floppy baby
Clostridium botulinum
Which bug?
Causes pharyngitis and 'pseudomembrane' in throat.
Potent exotoxin inhibits protein synthesis via ADP ribosylation of EF-2.
Corynebacterium diphtheriae
Which bug?
ADP ribosylation of G protein stimulates adenylyl cyclase. Increased pumping of Cl into gut, and decreased Na absorption -> voluminous rice-water diarrhea
Vibrio cholerae
Which bug?
Heat-labile toxin stimulates adenylate cyclase.
Heat-stable toxin stimulates guanylate cyclase.
Both cause watery diarrhea
E. coli
Which bug?
alpha toxin, a lecithinase that acts as a phospholipase to cleave cell membranes and causes gas gangrene; get double zone of hemolysis on blood agar.
Clostridium perfringens
Which bug?
Blocks the release of GABA and glycine; causes 'lockjaw'
Clostridium tetani
Which bug?
Blocks the relase of ACh (causes anticholinergic symptoms), CNS paralysis, especially cranial nerves
Clostridium botulinum
Which bug?
Spores found in canned food, honey
Clostridium botulinum
Which bug?
Toxin cleaves host cell rRNA and also enhances cytokine release, causing HUS (hemolytic uremic syndrome)
Shigella
Which bacteria display alpha-hemolysis?
Partial hemolysis - Strep pneumoniae, Strep viridans.
Forms green ring around colonies on blood agar.
What are the Group A beta-hemolytic streptococci (GAS)?
Strep pyogenes
What are the beta-hemolytic bacteria?
Complete hemolysis - forms a clear area of hemolysis on blood agar.
Ex. Staph aureus, Strep pyogenes (Group A), Strep agalactiae (Group B), Listeria monocytogenes
Which bug?
Protein A virulence factor; Can cause inflammatory disease (skin infections, organ abscesses), and toxin-mediates disease (scalded skin syndrome, rapid-onset food poisoning), etc.
Staphylococcus aureus
Which bug?
Infects prosthetic devices and intravenous catheters by producing adherent biofilms. Component of normal skin flora.
Staphylococcus epidermidis. Can be associated with endocarditis
Which bug?
Most common cause of: meningitis, otitis media (in children), pneumonia, sinusistis
Streptococcus pneumoniae
Which bug?
Lancet shaped; encapsulated; contains IgA protease
Streptococcus pneumoniae
Which bug?
Normal flora of the oropharynx and cause dental caries and subacute bacterial endocarditis.
Viridans group streptococci
Which bug?
Can cause pharyngitis, cellulitis, impetigo, scarlet fever, rheumatic fever, acute glomerulonephritis
Streptococcus pyogenes (group A streptococci)
Which bug?
ASO (Anti-streptolysin O) titer detects recent infection.
Streptococcus pyogenes (group A streptococci)
One of the first bacterial markers used for diagnosis and follow up of rheumatic fever or scarlet fever.
Which bug?
Colonizes vagina; Causes pneumonia, meningitis, and sepsis, mainly in babies
Streptococcus agalactiae (group B streptococci)
Which bug?
Screened in pregnant women at 35-37 weeks. Patients with positive culture receive intrapartum penicillin prophylaxis.
Streptococcus agalactiae (group B streptococci)
Which bug?
Normal colonic flora that are penicillin G resistant and cause UTI and subacute endocarditis.
Enterococci (group D streptococci)
What are some examples of spore-forming gram-positive bacteria?
Found in soil: Bacillus anthracis, Clostridium perfringens, Clostridium tetani.
Other: Bacillus cereus, Clostridium botulinum, Coxiella burnetii
Which bug?
Produces 2 toxins. Toxin A, enterotoxin, binds to the brush border of the gut. Toxin B, cytotoxin, destroys the cytoskeletal structure of enterocytes, causing pseudomembranous colitis.
Clostridium difficile.
Diagnosed by detection of one or both toxins in stool.
Which bug?
Associated with black eschar (painless ulcer/necrosis) if contact. Or flulike symptoms that rapidly progresses to fever, pulmonary hemorrhage, mediastinitis, and shock if inhaled.
Bacillus anthracis.
Which bug?
Acquired by ingestion of unpasteurized milk/cheese and deli meats or by vaginal transmission during birth. Can cause amnionitis, septicemia, and spontaneous abortion in pregnant women; neonatal meningitis; meningitis in immunocompromised patients; mild gastroenteritis
Listeria monocytogenes
Which bug?
Forms yellow 'sulfur granules' in sinus tracts. Causes oral/facial abscesses that may drain through sinus tracts in skin. Normal oral flora.
Actinomyces israelii
What is a Ghon focus?
Subpleural caseous granuloma caused by Mycobacterum tuberculosis.  Classical location for primary TB infection is surrounding the lobar fissures, either in the upper part of the lower lobe or lower part of the upper lobe.  Only detectable by chest X-ray i
Subpleural caseous granuloma caused by Mycobacterum tuberculosis. Classical location for primary TB infection is surrounding the lobar fissures, either in the upper part of the lower lobe or lower part of the upper lobe. Only detectable by chest X-ray if it calcifies or grows substantially
What is a Ghon complex?
If the Ghon focus also involves infection of adjacent lymphatics and hilar lymph nodes, it is known as the Ghon's complex or primary complex.
What are the most common sites of extrapulmonary disease in tuberculosis?
Mediastinal, retroperitoneal, and cervical (scrofula) lymph nodes - The most common site of tuberculous lymphadenitis (scrofula) is in the neck, along the sternocleidomastoid muscle; it is usually unilateral and causes little or no pain; advanced cases of tuberculous lymphadenitis may suppurate and form a draining sinus; Vertebral bodies (Pott's disease); Adrenals; Meninges; GI tract
Which organism?
Lowenstein-Jensen agar
Mycobacteria tuberculosis
Which organism?
Chocolate agar with factors V (NAD+) and X (hemantin)
Haemophilus influenza
Which organism?
Thayer-Martin (or VPN) media
Neisseria gonorrhoeae
Which bug?
Acid-fast bacillus that likes cool temperatures (infects skin and superficial nerves) and cannot be grown in vitro. The reservoir in USA: armadillos
Mycobacterium leprae - leprosy (Hanesen's disease).
Has 2 forms - lepromatous (presents diffusely over skin and is communicable); tuberculoid (limited to a few hypoesthetic skin nodules)
Give some examples of bugs that grow pink colonies on MacConkey agar.
Lactose-fermenting enteric bacteria.
Fast fermenter - Klebsiella, E. coli, Enterobacter
Slow fermenter - Citrobacter, Serratia
Which bug?
Found naturally in the environment, usually in water. Grow best in warm water, like the kind found in hot tubs, cooling towers, hot water tanks, large plumbing systems, decorative fountains. Can lead to severe pneumonia and fever
Legionella pneumophila
Legionnaire's disease = severe pneumonia and fever
Pontiac fever = mild flulike syndrome (patient does not have pneumonia).
Which bug?
Wound and burn infections, pneumonia (especially in cystic fibrosis), sepsis, external otitis, UTI, diabetic osteomyelitis.
Pseudomonas aeruginosa
Which bug?
Produces pyocyanin (blue-green pigment)
Pseudomonas aeruginosa
Which bug?
Produces Shiga-like toxin. Microbe invades intestinal mucosa and toxin causes necrosis and inflammation. Can present as dysentry.
E. coli (EIEC - Enteroinvasive Escherichia coli)
Which bug?
Labile toxin/stable toxin. No inflammation or invasion. Presents as traveler's diarrhea (watery)
E.coli (ETEC - Enterotoxigenic Escherichia coli)
Which bug?
No toxin produced. Adheres to apical surface, flattens villi, prevents absorption. Presents as diarrhea usually in children.
E. coli - EPEC (Enteropathogenic Escherichia coli)
Which bug?
Produces Shiga-like toxin and hemolytic-uremic syndrome. Presents as dysentry and does not ferment sorbitol
E. coli - EHEC (enterohemorrhagic E. coli)
O157:H7 is the most common serotype
Which bug?
Intestinal flora that causes lobar pneumonia in alcoholics and diabetics when aspirated. Also cause of nosocomial UTIs.
Klebsiella
Which bug?
Can cause fever, diarrhea, headache, and rose spots on abdomen.  Can remain in gallbladder chronically. Transmission via 'food, fingers, fecese, and flies'
Which bug?
Can cause fever, diarrhea, headache, and rose spots on abdomen. Can remain in gallbladder chronically. Transmission via 'food, fingers, fecese, and flies'
Salmonella typhi - typhoid fever.
Which bug?
Major cause of bloody diarrhea, especially in children. Fecal-oral tranmission through foods such as poultry, meat, unpasteurized milk. Comma, or S-shaped, oxidase-positive, grows at 42C. Common antecedent to Guillain-Barre syndrome
Campylobacter jejuni
Which bug?
Usually transmitted from pet feces (eg. puppies), contaminated milk, or pork. Outbreaks of diarrhea are common in day care centers. Causes mesenteric adenitis that can mimic Crohn's disease or appendicitis
Yersinia enterocolitica
Which bug?
Causes gastritis and up to 90% of duodenal ulcers. Risk factor for peptic ulcer, gastric adenocarcinoma, and lymphoma.
Helicobacter pylori
List the spirochetes.
Borrelia (big size), Leptospira, Treponema
Which bug?
Question mark-shaped bacteria found in water contaminated with animal urine. Can produce flulike symptoms, fever, headache, abdominal pain, jaundice, and photophobia with conjunctivitis. Most prevalent among surfers and in the tropics.
Leptospira interrogans - leptospirosis
Which bug?
Jaundice and azotemia from liver and kidney dysfunction; fever, hemorrhage, and anemia
Leptospira interrogans.
Weil's disease (icterohemorrhagic leptospirosis)
Which bug?
Presents with erythema chronicum migrans and flulike symptoms. Can progress to neurologic (Bell's palsy) and cardiac manifestations (AV nodal block), as well as chronic monoarthritis, and migratory polyarthritis.
Borrelia burgdorferi - Lyme disease (3 stages)
Which bug?
Transmitted by the tick Ixodes. Mice are important reservoirs. Deer required for tick life cycle.
Borrelia burgdorferi (Lyme disease)
Which bug?
Presents with painless chancre
Treponema pallidum - primary syphilis
Which bug?
Disseminated disease with constitutional symptoms, maculopapular rash (palms and soles), condylomata lata, and patchy alopecia
Treponema pallidum - secondary syphilis
Which bug?
Gummas (chronic granulomas - soft, non-cancerous growth), aortitis (vasa vasorum destruction), neurosyphilis (tabes dorsalis), Argyll Robertson pupil
Treponema pallidum - tertiary syphilis
Which bug?
Saber shins (sharp anterior bowing of the tibia), saddle nose (loss of height of the nose, because of the collapse of the bridge), CN VIII deafness, Hutchinson's teeth (smaller and more widely spaced teeth with notches on their biting surfaces), mulberry molars (multiple rounded rudimentary enamel cusps on the permanent first molars)
Treponema pallidum - congenital syphilis
What is the VDRL test? What can produce a false positive?
VDRL detects nonspecific antibody that reacts with beef cardiolipin, and used for the diagnosis of syphilis.
False positive:
Viruses (EBV, hepatitis)
Drugs
Rheumatic fever
Lupus and Leprosy
Which bug?
Life cycle contains 2 forms - infectious elementary body, and a replicating, non-infectious reticulate body.
Chlamydiae
Which bug?
Causes reactive arthritis, conjunctivitis, nongonococcal urethritis, and pelvic inflammatory disease
chlamydia trachomatis
Which bug?
Chronic infection that can cause blindness due to follicular conjunctivitis in Africa
Chlamydia trachomatis - serotypes A, B, C
Which bug?
Most common bacterial STD in USA; Can cause urethritis/PID, ectopic pregnancy, neonatal pneumonia (staccato cough), or neonatal conjunctivitis
Chlamydia trachomatis - serotypes D - K
Which bug?
Lymphogranuloma venereum - Swollen lymph nodes in the genital area (lymph edema)
Chlamydia trachomatis - serotypes L1, L2, L3
Note: Not to be confused with granuloma inguinale (donovanosis), which is caused by Klebsiella granulomatis
Which bug?
Only bacterial membrane containing cholesterol
Mycoplasma pneumoniae
Which bug?
Classic cause of atypical 'walking' pneumonia (insidious onset, headache, nonproductive cough, diffuse interstitial infiltrate). Frequent outbreaks in military recruits and prisons.
Mycoplasma pneumoniae
What's the fungus?
Mississippi and Ohio river valleys. Causes pneumonia
Histoplasmosis
What's the fungus?
Associated with bird or bat droppings; Causes pneumonia; Found within macrophages
Histoplasmosis
What's the fungus?
States east of Mississippi River and Central America; Causes inflammatory lung disease and can disseminate to skin and bone.
Blastomycosis
What's the fungus?
Broad-based budding (same size as RBC); Forms granulomatous nodules; Can cause pneumonia
Blastomycosis
What's the fungus?
Southwestern Unites States, California; Causes pneumonia and meningitis; Can disseminate to skin and bone.
Coccioidomycosis
What's the fungus?
San Joaquin Valley or desert 'valley fever"
Coccioidomycosis
What's the fungus?
Spherule filled with endospores (larger than RBCs); Case rates increase after earthquakes (spherules in dust are thrown up in the air). Can cause pneumonia
Coccioidomycosis
What's the fungus?
Latin America. Can cause pneumonia
Paracoccioidomycosis
What's the fungus?
Budding yeast with 'captain's wheel' formation (much larger than RBCs); Can cause pneumonia
Paracoccioidomycosis
What's the fungus?
Responsible for Tinea versicolor - degradation of lipids produces acids that damage melanocytes and cause hypopigmented and/or hyperpigmented patches
Malassezia furfur (cutaneous mycoses)
What's the fungus?
Responsible for Tinea pedis (athlete's foot), Tinea cruris (jock itch), Tinea corporis (ringworm of the body), Tinea capitis (ringworm of the scalp)
Dermatophytes - Microsporum, Trichophyton, and Epidermophyton
What's the fungus?
Oral and esophageal thrush in immunocompromised (neonates, steroids, diabetes, AIDS), vulvovaginitis (diabetes, use of antibiotics), diaper rash, endocarditis in IV drug users, disseminated candidiasis, chronic mucocutaneous candidiasis
Candida albicans
What's the fungus?
Mold with septate hyphae that branch at acute angles
Aspergillus fumigatus
What's the fungus?
Dimorphic - yeast with pseudohyphae in culture at 20C; germ tube formation (an outgrowth produced by spores of spore-releasing fungi during germination) at 37C (diagnostic).
Candida albicans
What's the fungus?
"Soap bubble" lesions in brain
Cryptococcus neoformans
What's the fungus?
Heavily encapsulated yeast. Not dimorphic. Found in soil, pigeon droppings. Culture on Sabouraud's agar. Latex agglutination test detects polysaccharide capsular antigen and is more specific.
Cryptococcus neoformans
What's the fungus?
Mold with irregular nonseptate hyphae at wide angles.
Mucor and rhizopus spp.
What's the fungus?
Disease mostly in ketoacidotic diabetic and leukemic patients. Proliferates in blood vessel walls when there is excess ketone and glucose, penetrate cribiform plate, and enter brain. Headache, facial pain, black necrotic eschar on face cranial nerve involvement
Rhinocerebral Mucormycosis - Mucor and rhizopus spp.
What's the fungus?
Saucer-shaped yeast forms. Causes diffuse interstitial pneumonia. Immunosuppression (AIDS) predisposes to disease. Identified by methenamine silver stain of lung tissue
Pneumocystic jiroveci (formerly carnii).
Start prophylaxis when CD4 drops <200 cells/mL in HIV patients.
What's the fungus?
Dimorphic fungus that lives on vegetation. When traumatically introduced into skin, typically by a thorn ("rose gardener's disease"), causes local pustule or ulcer with nodules along draining lymphatics (ascending lymphangitis)
Sporothrix schenckii - Sporotrichosis.
Cigar-shaped yeast forms, unequal budding.
Which bug?
Cat scratch fever
Bartonella spp.
Which bug?
Louse - recurrent fever from variable surface antigens
Borrelia recurrentis
Which bug?
Undulant fever (fever rises and falls in waves); transmission via diary products, or contact with animals
Brucella spp
Which bug?
Tularemia - Transmission from tick bite; rabbits; deer
Francisella tularensis
Which bug?
Plague - transmission from flea bite; rodents, especially prairie dogs
Yersinia pestis
Which bug?
Cellulitis and osteomyelitis - transmission from animal bite (cats, dogs)
Pasteurella mutlocida
What is the classic triad of Rickettsia?
Headache, fever, rash (vasculitis)
Exception: Coxiella causes Q fever - no rash, not transmitted by an arthropod vector (tick feces and cattle placenta release spores that are inhaled), has negative Weil-Felix reaction
What is the Weil-Felix reaction?
Patient serum mixed with Proteus antigens, antirickettsial antibodies cross-react to Proteos O antigens and agglutinate (Weil-Felix is negative in Coxiella infection)
What's the bug?
Rash on palms and soles (migrating to wrists, ankles, then trunk), headache, fever. Endemic to East coast.
Rickettsia rickettsii - Rocky Mountain spotted fever
What diseases are associated with palm and sole rash?
Coxsackie A infection (hand, foot, and mouth disease), Rocky Mountain spotted fever, Syphylis
What's the protozoa?
Causes bloating, flatulence, foul-smelling, fatty diarrhea. Transmitted as cysts in water, and often seen in campers/hikers.
Giardia lamblia (giardiasis). Diagnosis: trophozoites or cysts in stool
What's the protozoa?
Bloody diarrhea (dysentery), liver abscesses (reddish brown), RUQ pain. Transmitted via cysts in water.
Entamoeba histolytica (amebiasis).
Diagnosis: serology and/or trophozoites or cysts in stool; RBCs in cytoplasm of entamoeba
What's the protozoa?
Severe diarrhea in AIDS patients. Mild disease (watery diarrhea) in non-immunocompromised patients. Transmitted via cysts in water.
Cryptosporidium.
Diagnosis: cysts on acid-fast stain.
What's the protozoa?
Brain abscess in HIV (ring-enhancing brain lesions on CT/MRI). Classic triad: chorioretinitis (uveitis), hydrocephalus, and intracranial calcifications. Transmission via cysts in meat or cat feces.
Note: Crosses placenta (pregnant women should avoid cats)
Toxoplasma gondii.
Diagnosis: Serology, biopsy
What's the protozoa?
Rapidly fatal meningoencephalitis. Transmission via swimming in freshwater lakes; enter via the cribiform plate.
Naegleria fowleri.
Diagnosis: Amoebas in spinal fluid
What's the protozoa?
African sleeping sickness (enlarged lymph nodes, recurring fever, somnolence, coma). Transmission via Tsetse fly (painful bite).
Trypanosoma brucei (T. gambiense, T. rhodesiense).
Diagnosis: Blood smear
What's the protozoa?
Painful bite from Tsetse fly
Trypanosoma brucei (T. gambiense, T. rhodesiense).
African sleeping sickness
What's the protozoa?
Chagas' disease (dilated cardiomyopathy, megacolon, megaesophagus); predominantly in South America. Transmission via Reduviid bug ("kissing bug"), painless bite
Trypanosomsa cruzi.
Diagnosis: Blood smear
What's the protozoa?
Painless bite from Reduviid bug ("kissing bug")
Trypanosoma cruzi
Chagas disease
What's the protozoa?
Spiking fevers, hepatosplenomegaly, pancytopenia. Transmission via the sandfly.
Leishmania donovani (Visceral leishmaniasis).
Diagnosis: Macrophages containing "amastigotes" (form that lacks flagella)
What's the protozoa?
48hr (tertian) cyclic fever, headache, anemia, splenomegaly. Transmission via the mosquito (anopheles)
Plasmodium (P. vivax/ovale, P. falciparum, P. malariae)
Diagnosis: Blood smear
What's the protozoa?
Cerebral malaria
P. falciparum.
parasitized RBCs occlude capillaries in brain
What's the protozoa?
Fever, hemolytic anemia; predominantly in northeastern US. Transmission via Ixodes tick.
Babesia (babesiosis).
Diagnosis: blood smear, no RBC pigment, appears as "Maltese cross"
Note: Ixodes tick is the same as Borrelia burgdorferi (Lyme disease) and may often coinfect humans.
What's the protozoa?
Appears as "Maltese cross" on blood smear
Babesia
What's the protozoa?
Foul-smelling, greenish discharge from vagina; itching and burning. Transmission is via sexual contact (cannot exist outside human because it cannot form cysts)
Trichomonas vaginalis (vaginitis)
Diagnosis: Trophozoites (motile) on wet mount.
Note: Do not confuse with Gardnerella vaginalis (gram negative bacteria) that causes vaginosis.
What's the helminth?
Food contaminated with eggs; intestinal infection; causes pruritus; can use "Scotch tape test" to help with diagnosis
Nematode: Enterobius vermicularis (pinworm)
What's the helminth?
Pinworm
Nematode: Enterobius vermicularis
What's the helminth?
Eggs are visible in feces; intestinal infection. "Giant roundworm"
Nematode: Ascaris lumbricoides
What's the helminth?
Undercooked meat, usually pork; inflammation of muscle (larvae encyst in muscle); periorbital edema
Nematode: Trichinella spiralis
What's the helminth?
Larvae in soil penetrate the skin; intestinal infection; causes vomiting, diarrhea, anemia.
Nematode: Strongyloides stercoralis
What's the helminth?
Larvae penetrate skin of feet; intestinal infection can cause anemia. "Hookworms"
Nematode: Ancylostoma duodenale, Nectar americanus (hookworms)
What's the helminth?
Female mosquito; causes blockage of lymphatic vessels (elephantiasis)
Nematode: Wuchereria bancrofti
Note: Takes 9 months to 1 year after bite to get elephantiasis symptoms.
What's the helminth?
Ingestion of larvae encysted in undercooked pork leads to intestinal tapeworms. Ingestion of eggs causes cysticercosis and neurocysticercosis, mass lesions in brain ("swiss cheese" appearance)
Cestodes (tapeworms): Taenia solium
What's the helminth?
Snails are host. Cercariae penetrate skin of humans; causes granulomas, fibrosis, and inflammation of spleen and liver. Can lead to squamous cell carcinoma of the bladder.
Trematodes (flukes): Schistosoma
What are some examples of live attenuated viral vaccines?
Smallpox, yellow fever, chickenpox (VZV), Sabin's polio virus, MMR (measles, mumps, rubella), intranasal influenza
What is the only live attenuated vaccine that can be given to HIV-positive patients?
MMR (measles, mumps, rubella)
What are some examples of killed/inactivated viral vaccines?
Rabies, influenza (IM), Salk polio, and HAV
What test is used to identify the herpesvirus family?
Tzanck test - a smear of an opened skin vesicle to detect multinucleated giant cells. Used to assay HSV-1, HSV-2, VZV. Infected cells also have intranuclear Cowdry A inclusions
What's the virus?
Gingivostomatitis, keratoconjunctivitis, temoral lobe encephalitis (most common cause of sporadic encephalitis in US), herpes labialis. Route of transmission is via respiratory secretions, saliva.
Herpesvirus: HSV-1
What's the virus?
Herpes genitalis, neonatal herpes. Transmission via sexual contact, perinatal.
Herpesvirus: HSV-2
What's the virus?
Shingles, encephalitis, pneumonia. Transmission via respiratory secretions.
Herpesvirus: VZV
What's the virus?
Infectious mononucleiosis, Burkitt's lymphoma, nasopharyngeal carcinoma. Transmission via respiratory secretions, saliva
Herpesvirus: EBV
What's the virus?
Congenital infection, mononucleosis (negative Monospot), pneumonia. Infected cell's have characteristic "owl's eye" inclusions. Transmission is congenital, via transfusion, sexual contact, saliva, urine, transplant
Herpesvirus: CMV
What's the virus?
Roseola: high fevers for several days that can cause seizures, followed by a diffuse malar rash. Undetermined mode of transmission
Herpesvirus: HHV-6 "sixth disease"
What's the virus?
Associated with HIV patients. Transmission via sexual contact
Herpesvirus: HHV-8 (Kaposi sarcoma)
Where does HSV-1 classically remain during the latent period? HSV-2?
HSV-1: trigeminal ganglia
HSV-2: sacral ganglia
Where does VZV classically remain during the latent phase? EBV? CMV?
VZV: trigeminal and dorsal root ganglia
EBV: B cells
CMV: mononuclear cells
What's the virus?
Characterized by fever, hepatosplenomegaly, pharyngitis, and lymphadenopathy (especially posterior cervical nodes).
Herpesvirus: EBV.
Peak incidence 15-20yrs "kissing disease"
What is the Monospot test?
Heterophil antibodies detected by agglutination of sheep RBCs.
Positive with mononucleoisis due to EBV; negative when due to CMV
What's the virus?
Aplastic crises in sickle cell disease, "slapped cheeks" rash in children (erythema infectiousum/fifth disease), RBC destruction in fetus leads to hydrops fetalis and death, pure RBC aplasia and rheumatoid arthritis-like symptoms in adults.
Parvovirus: B19 virus
What's the virus?
Genital warts, CIN, cervical cancer.
Pappilomavirus: HPV
What's the virus?
Acute or chronic hepatitis; vaccine available.
Hepadnavirus: HBV
What's the virus?
Febrile pharyngitis (sore throat); acute hemorrhagic cystitis; Pneumonia; Conjunctivitis (pink eye)
Adenovirus
What's the virus?
Progressive multifocal leukoencephalopathy (PML) in HIV
Polyomavirus: JC virus
What's the virus?
Flesh-coloured dome lesions with central dimple.
Poxvirus: Molluscum contagiosum.
Note: Smallpox also falls into the Poxvirus family
What's the virus?
Cause of common cold
Picornavirus: Rhinovirus OR
Coronavirus: Coronavirus (common cold and SARS)
What's the virus?
Transmitted by Aedes mosquitos. Virus has a monkey or human reservoir. Symptoms include high fever, black vomitus, and jaundice. Tongue can appear red on the sides, and white on the tip
Flavivirus: Yellow fever virus
What's the virus?
Most important global cause of infantile gastroenteritis. Major cause of acute diarrhea in USA during winter (especially in daycares and kindergartens). Villous destrution and atrophy leads to decreased absorption of Na and water.
Reovirus: Rotavirus
What's the virus?
Contains hemagglutinin (promotes viral entry) and neuraminidase (promotes progeny virion release) antigens. Patients at risk for fatal bacterial superinfection. Rapid genetic changes.
Orthomyxoviruses: influenza viruses
What is the difference between genetic shift and genetic drift? Which change is responsible for more deadly changes in viruses?
Genetic shift: Reassortment of viral genome (such as when human flu A virus recombines with swine flu A virus).
Genetic drift: Minor (antigenic drift) changes based on random mutation.
Sudden shift is more deadly than gradual drift.
What's the virus?
Causes German (3-day) measles. Fever, postauricular tenderness, lymphadenopathy, arthralgias, fine truncal rash. Causes mild disease in children but serious congenital disease.
Togavirus: Rubella
Note: a TORCH infection
What viruses are part of the paramyxovirus family?
PaRaMyxovirus: Parainfluenza (croup), RSV (bronchiolitis in babies), rubeola (Measles), Mumps
What's the virus?
Koplik spots (red spots with blue-white center on buccal mucosa) are diagnostic. Subacute sclerosing panencephalitis (SSPE) can develop years later; Encephalitis (1:2000); and giant cell pneumonia (rarely in immunosuppressed)
Paroamyxovirus: Measles (rubeola)
What's the virus?
Cough, coryza, conjunctivitis
3C's of measles (rubeola)
What's the virus?
Parotitis, orchitis, and aseptic meningitis. Can cause sterility (especially after puberty)
Paramyxovirus: Mumps
What's the virus?
Negri bodies are characteristic cytoplasmic inclusions in neurons (commonly found in Purkinje cells of cerebellum).  Has bullet-shaped capsid.
What's the virus?
Negri bodies are characteristic cytoplasmic inclusions in neurons (commonly found in Purkinje cells of cerebellum). Has bullet-shaped capsid. Travels to the CNS by migrating in a retrograde fashion up nerve axons
Rhabodovirus: Rabies virus
What's the virus?
Progression of disease: fever, malaise -> agitation, photophobia, hydrophobia -> paralysis, coma -> death.
More commonly from bat, raccoon, and skunk bites than from dog bites in US.
Rhabdovirus: Rabies virus
What viruses are part of the picornavirus family?
PERCH
Poliovirus, Echovirus, Rhinovirus, Coxsackievirus, HAV
What's the virus?
Motor neurons of anterior horn
Picornavirus: Poliovirus
What's the virus?
Aseptic meningitis and myocarditis
Picornavirus: Echovirus
What's the virus?
Aseptic meningitis, herpangina (febrile pharyngitis, hand, foot, mouth disease), myocarditis
Picornavirus: Coxsackievirus
Which hepatitis virus?
DNA hepadnavirus
HBV
Which hepatitis virus?
Transmitted primarily via fecal-oral route. Short incubation (3 weeks). No carriers. RNA picornavirus
HAV
Which hepatitis virus?
Transmitted primarily by parenteral, sexual, and maternal-fecal routes. Long incubation (3 months)
HBV
Which hepatitis virus?
Transmitted primarily via blood. Common cause of post-transfusion hepatitis and of hepatitis among IV drug users in the US.
HCV (RNA flavivirus)
Which hepatitis virus?
Defective virus that requires HbsAg as its envelope.
HDV.
Note: Can coinfect with HBV or superinfect (the latter has worse prognosis)
Which hepatitis virus?
Transmitted enterically and causes water-borne epidemics. High mortality rate in pregnant women (20-25%).
HEV (RNA hepevirus)
What's the diagnosis?
Positive: HBsAg, HBeAg, Anti-HBcAb (IgM)
Acute HBV
What's the diagnosis?
Positive: Anti-HBcAb
Window period (equivalence zone) = The time between the removal of the HBsAg and the appearance of anti-HBs is called the window period (host remains infected but is successfully clearing the virus)
What's the diagnosis?
Positive: HBsAg, HBeAg, Anti-HBcAb (IgG)
Chronic HBV (high infectivity)
What's the diagnosis?
Positive: HBsAg, Anti-HBeAb, Anti-HBcAb (IgG)
Chronic HBV (low infectivity)
What's the diagnosis?
Positive: Anti-HBsAb, Anti-HBeAb, Anti-HBcAb (IgG)
Recovery of HBV
What's the diagnosis?
Positive: Anti-HBsAb
Immunized against HBV
What are the 3 structural genes in HIV? What do they code for?
env: gp120 (attachment to host T cell), gp41 (fusion and entry)
gag: p24 (capsid protein)
pol: reverse transcriptase (synthesizes dsDNA from RNA)
What proteins do HIV particles bind to on T cells? On macrophages?
Virus binds CXCR4 and CD4 on T cells; binds CCR5 and CD4 on macrophages.
Note: Homozygous CCR5 mutation = immunity; heterozygous CCR5 mutation = slower course
How is HIV diagnosed?
1. ELISA (sensitive, high false-positive rate and low threshold --> rule OUT test)
2. Western blot (specific, high false-negative rate and high threshold --> rule IN test)
Note: Often falsely negative in first 1-2months of infection. Can be falsely positive in babies born to infected mothers (anti-gp120 crosses placenta)
How is AIDS diagnosed?
<200 CD4+ (normal 500-1500). HIV positive with AIDS indicator condition (pneumocystis jiroveci) or CD4/CD8 ratio <1.5
What infections are HIV patients at risk for with a CD4 level <400?
Oral thrush, tinea pedis, reactivation VZV, reactivation TB, other bacterial infections (H. influenza, S. pneumoniae, Salmonella)
What infections are HIV patients at risk for with a CD4 level <200?
Reactivation of HSV, cryptosporidiosis, Isospora, disseminated coocidioidomycosis, Pneumocystic pneumonia (TMP-SMX for prophylaxis)
What infections are HIV patients at risk for with a CD4 level <100?
Candidal esophagitis, toxoplasmosis, histoplasmosis
What infections are HIV patients at risk for with a CD4 level <50?
CMV retinitis and esophagitis, disseminated MAC, cryptococcal meningoencephalitis
What bug is commonly responsible for the food poisoning?
Contaminated seafood?
Vibrio parahaemolyticus and V. vulnificus in contaminated seafood.
V. vulnificus can cause wound infections from contact with contaminated water or shellfish
What bug is commonly responsible for the food poisoning?
Contaminated reheated rice
Bacillus cereus
Note: food poisoning starts quickly and ends quickly
What bug is commonly responsible for the food poisoning?
Contaminated meats, mayonnaise, custard. Preformed toxin
S. aureus.
Note: food poisoning starts quickly and ends quickly
What bug is commonly responsible for the food poisoning?
Contaminated reheated meat dishes
Clostridium perfringens
What bug is commonly responsible for the food poisoning?
Improperly canned foods (bulging cans)
C. botulinum
What bug is commonly responsible for the food poisoning?
Undercooked meats
E. coli )157: H7
What bug is commonly responsible for the food poisoning?
Contaminated poultry, meat, and eggs
Salmonella
What are the commonest causes of pneumonia in neonates (<4weeks)?
Group B streptocooci, E. coli
What are the commonest causes of pneumonia in children (4wk - 18yr)?
Viruses (RSV), Mycoplasma, Chlamydia pneumoniae, Streptococcus pneumoniae
What are the commonest causes of pneumonia in adults (18 - 4-yr)?
Mycoplasma, C. pneumoniae, S. pneumoniae
What are the commonest causes of pneumonia in adults (40-65yr)?
S pneumoniae, H. influenzae, Anaerobes, Viruses, Mycoplasma
What are the commonest causes of pneumonia in the elderly?
S. pneumoniae, Influenza virus, Anaerobes, H. influenza, Gram negative rods
What are the commonest causes of nosocomial pneumonia?
Staphylococcus, enteric gram-negative rods
What are the commonest causes of pneumonia in immunocompromised patients?
Staphylococcus, enteric-gram negative rods, fungi, viruses, Pneumocystis jiroveci (HIV)
What is the commonest causes of aspiration pneumonia?
Anaerobes
What are the commonest causes of pneumonia in alcoholic/HIV drug users?
S. pneumoniae, Klebsiella, Staphylococcus
What is the commonest causes of pneumonia in CF patients?
Pseudomonas
What are the commonest causes of pneumonia in postviral patients?
Staphylococcus, H. influenza
What are the commonest causes of atypical pneumonia?
Mycoplasma, Legionella, Chlamydia
What are the commonest causes of meningitis in newborns (0-6mo)?
Group B streptococci, E. coli, Listeria
What are the commonest causes of meningitis in children (6mo - 6yrs)?
Streptococcus pneumoniae, Neisseria meningitidis, Haemophilus influenza type B, Enteroviruses
What are the commonest causes of meningitis between the ages of 6-60yrs?
N. meningitidis, Enteroviruses, S. pneumoniae, HSV
What are the commonest causes of meningitis after 60yrs
S. pneumoniae, Gram-negative rods, Listeria
What are some viral vauses of meningitis?
Enteroviruses (coxsackievirus, echovirus), HSV, HIV, West Nile virus, VZV.
What are the commonest causes of meningitis in HIV patients?
Cryptococcus, CMV, toxoplasmosis (brain abscess), JC virus (PML)
How do you differentiate between bacterial, fungal, and viral causes of meningitis by CSF findings?
Bacterial: increased pressure, PMNs, protein; decreased sugar.
Fungal/TB: Increased pressure, lymphocytes, protein; decreased sugar
Viral: Normal/increased pressure and protein; increased lymphocytes; NORMAL sugar
What is the commonest cause of osteomyelitis? In sexually active people? In diabetics and drug addicts? In sickle cell? In prosthetic replacment? In vertebrae? If cat/dog bites or scratches?
Common: S. aureus (assume if no other information)
Sexually active: N. gonorrhea (rare), septic arthritis
Diabetics + drug addicts: Pseudomonas
Sickle cell: Salmonella
Prosthetic: S. aureus, S. epidermidis
Vertebral: M. tuberculosis (Pott's disease)
Cat/dog: Pasteurella multocida
What are the commonest causes of UTI?
1. E. coli
2. Staph. saprophyticus
3. Klebsiella pneumoniae
Proteus mirabilis (produces urease; causes struvite stones), Pseudomonas aeruginosa
What are ToRCHeS infections?
Microbes that may pass from mother to fetus. Nonspecific signs (hepatosplenomegaly, jaundice, thrombocytopenia, growth retardation).
Toxoplasma gondii, Rubella, CMV, HIV, HSV, Syphilis
Others: Parvovirus B19 (hydrops fetalis)
Which TORCH infection?
Maternal: asymptomatic; lymphadenopathy (rare)
Neonatal: chorioretinitis, hydrocephalus, intracranial calcifications
Toxoplasma gondii
Which TORCH infection?
Maternal: rash, lymphadenopathy, arthritis
Neonatal: PDA (or pulmonary artery hypoplasia), cataracts. and deafness. May also have "blueberry muffin" rash
Rubella
Which TORCH infection?
Maternal: Usually asymptomatic, mononucleosis-like illness.
Neonatal: Hearing loss (unilateral), seizures, petechial rash. 90% asymptomatic
CMV (most common)
Which TORCH infection?
Maternal: variable presentation
Neonatal: recurrent infections, chronic diarrhea
HIV
Which TORCH infection?
Maternal: Usually asymptomatic; vesicular lesions
Neonatal: Temporal encephalitis, vesicular lesions
HSV
Which TORCH infection?
Maternal: Chancre, disseminated rash, or cardiac/neurologic disease
Neonatal: Often results in stillbirth, hydrops fetalis; if child survives, presents with facial abnormalities
Syphilis
What is responsible for the rash?
Rash begins at head and moves down; postauricular lymphadenopathy
Rubella virus (German measles)
What is responsible for the rash?
Rash begins at head and moves down; rash is preceded by cough, coryza, conjunctivitis, and blue-white spots on buccal mucosa.
Measles virus (rubeola, measles).
Note: blue-whit spots on buccal mucosa = Koplik spots
What is responsible for the rash?
No rash, but can [resemt with parotitis, meningitis (orchitis or oophoritis in young adults).
Mumps virus (Mumps)
What is responsible for the rash?
Rash begins on trunk; spread to face and extremties with lesions of different age.
VZV (chickenpox)
What is responsible for the rash?
A macular rash over body appears after several days of high fever; usually affects infants.
HHV-6 (Roseola)
What is responsible for the rash?
"Slapped cheek" rash on fact later appears over body in reticular, 'lace-like' pattern. (Can cause hyrops fetalis in pregnant women).
Parvovirus B19 (erythema infectiosum)
What is responsible for the rash?
Erythematous, sandpaper-like rash with fever and sore throat
Streptococcous pyogenes (Scarlet fever)
What is responsible for the rash?
Vesicular rash on palms and soles; ulcers in oral mucosa
Coxsackievirus type A (Hand-foot-mouth disease)
STD?
Urethritis, cervicitis, PID, prostatitis, epididymitis, arthritis, creamy purulent discharge (yellow-green)
Gonorrhea (Neisseria gonorrhoeae)
STD?
Painless chancre
primary syphilis (Treponema pallidum)
STD?
Fever, lymphadenopathy, skin rashes, condylomata lata
Secondary syphilis (Treponema pallidum)
STD?
Gummas, tabes dorsalis, general paresis, aortitis, Argyll Robertson pupil
Tertiary syphilis (Treponema pallidum)
STD?
Painful genital ulcer, inguinal adenopathy
Chancroid (Haemophilus ducreyi)
STD?
Painful penile, vulvar, or cervical vesicles and ulcers; can cause systemic symptoms such as fever, headache, myalgia
Genital herpes (HSV-2)
STD?
Urethritis, cervicitis, conjunctivitis, Reiter's syndrome, PID, discharge (white/clear)
Chlamydia (Chlamydia trachomatis D-K)
STD?
Ulcers, lymphadenopathy, rectal strictures
Lymphogranuloma venereum (Chlamydia trachomatis L1-L3)
STD?
Vaginitis, strawberry-coloured mucosa, corkscrew motility on wet prep
Trichomonas vaginalis
STD?
Opportunistic infections, Kaposi's sarcoma, lymphoma
AIDS (HIV)
STD?
Genital warts, koilocytes
Condylomata acuminata (HPV 6 and 11)
STD?
Jaundice
Hepatitis B (HBV)
STD?
Noninflammatory, malodorous discharge (dishy smell); positive whiff test, clue cells
Bacterial vaginosis (Gardnerella vaginalis)
Cause of infection in HIV patient?
Low-grade fevers, cough, hepatosplenomegaly. Oval yeasts within macrophages.
Histoplasma capsulatum (only pulmonary symptoms in immunocompetent hosts)
Cause of infection in HIV patient?
Fluffy white, cottage-cheese lesions, often in mouth. Pseudohyphae
C. albicans (thrush)
Cause of infection in HIV patient?
Superficial vascular proliferation. Biopsy reveals neutrophilic inflammation
Bartonella henselae (causes bacillary angiomatosis)
Cause of infection in HIV patient?
Superficial neoplastic proliferation of vasculature. Biopsy reveals lymphocytic inflammation.
HHV-8 (causes Kaposi's sarcoma)
Cause of infection in HIV patient?
Chronic, watery diarrhea. Acid-fast cysts in stool
Cryptosporidium spp.
Cause of infection in HIV patient?
Meningitis. India ink stain reveals yeast with narrow-based budding and large capsule.
Cryptococcus neoformans (may also cause encephalitis)
Cause of infection in HIV patient?
Encephalopathy. Due to reactivation of latent virus; results in demyelination
JC virus (cause of PML - Progressive multifocal leukoencephalopathy)
Cause of infection in HIV patient?
Abscesses. Many ring-enhancing lesions on imaging.
Toxoplasma gondii
Cause of infection in HIV patient?
Retinitis. Cotton-wool spots on fundoscopic exam.
CMV
Cause of infection in HIV patient?
Hairy leukoplakia. Often on lateral tongue.
EBV
Cause of infection in HIV patient?
Non-Hodgkin's lymphoma (large cell type). Often on oropharynx (Waldeyer's ring)
EBV
Cause of infection in HIV patient?
Squamous cell carcinoma. Often in anus (MSM) or cervix (females)
HPV
Cause of infection in HIV patient?
Interstitial pneumonia. Biopsy reveals cells with intranuclear (owl's eye) inclusion bodies
CMV
Cause of infection in HIV patient?
Invasive aspergillosis. Pleuritic pain, hemoptysis, infiltrates on imaging.
Aspergillus fumigatus
Cause of infection in HIV patient?
Pneumonia. Especially with CD4 <200
Pneumocystis jiroveci
Cause of infection in HIV patient?
Tuberculosis-like disease. Especially with CD4 <50.
Mycobacterium avium-intracellulare
What's the bug?
Pharyngitis; grayish oropharyngeal exudate; painful throat in unimmunized child.
Corynebacterium diphtheriae. "pseudomembranes" may obstruct airway.
Elaborates toxin that causes necrosis in pharynx, cardiac, and CNS tissue.
What's the bug?
Epiglottitis; fever with dysphagia, drooling, and difficulty breathing due to edamtous 'cherry red' epiglottis in unimmunized child.
H. influenza type B (also capable of causing epiglottitis in fully immunized children).