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18 Cards in this Set

  • Front
  • Back

human intestinal microbiome

  • trillions of bacteria; 500 - 1000 different species
  • primarily Gram-negative anaerobes of the genus Bacteriodes
  • also, facultative anaerobic enterobacteria which are short Gram-negative rods

intestinal microbiota

  • serve to protect the human body by outcompeting pathogens
  • ex: Escherichia and Enterobacter


(members of the genera Salmonella and Shigella are pathogenic and can cause serious diseases of the digestive system)

Why is identification of enteric bacteria important and what test is used?

  • enteric bacteria are similar morphologically and physiologically
  • important to know that food and water sources are not contaminated by these bacteria
  • IMViC test is used

IMViC Test

used to test for enteric bacteria



Indole


Methyl Red


Voges-Prokauer


Citrate test



(i is added for pronunciation)

tryptophan

  • an amino acid found in almost all proteins
  • bacteria synthesize tryptophanase to break down tryptophan into its metabolic products: indole, pyruvic acid, and ammonia
  • pyruvic acid & ammonia are used by the cell
  • indole accumulates in the medium

Kovac's reagent

  • tests for the presence of indole
  • p-dimethylaminobenzaldehyde reacts w/ indole to produce the red dye rosindole
  • indole positive will have a visible red layer on the surface of the medium

Indole Test

  • tests whether the bacteria can metabolize tryptophan by detecting accumulation of indole
  • uses a SIM deep tube with stab inoculation
  • after incubation Kovac's reagent is added to the media
  • if indole is present a positive result will have a red layer
  • a negative result will have a light yellow/orange layer

mixed-acid fermentation

  • byproducts are mixtures of large amounts of stable acids
  • ex: E. coli
  • uses the Methyl Red Test
  • positive red result would indicate an acidic pH below 4.4

MR-VP broth media

contains:


  • glucose - fermentable CHO
  • peptone - protein
  • phosphate buffer - buffers pH changes

Methyl Red Test

  • used to test for mixed-acid fermentation in MR-VP media
  • organisms that produce enough acid to overcome the buffering capacity of the broth
  • after incubation the pH indicator Methyl Red is added
  • red = positive = pH below 4.4
  • orange = negative = intermediate pH
  • yellow = negative = pH above 6.0

Barritt's reagent

  • used in the Voges-Proskauer Test
  • contains alcoholic α-naphthol (VP-A) and 40% potassium hydroxide solution (VP-B) that will react with acetoin and oxygen to produce a red wine color
  • reaction may take up to 30 min for color to develop

Voges-Proskauer Test

  • test for organisms able to ferment glucose, but quickly convert their acidic products to neutral acetoin and 2,3 butanediol
  • inoculation of MV-VP media; incubation for 72 hours; production of acetoin is dependent on incubation time and pH
  • after incubation Barritt's reagent is added
  • positive result will give a red color at the top of the tube

Which tests are used to determine if the organisms can ferment glucose?

Methyl Red - tests for mixed-acid production


Voges-Proskauer - tests for acetoin or 2,3 butanediol products



(difference is in the products)

Citrate Utilization Test

  • tests if the organism can use citrate as a sole carbon source; bacteria that synthesize the enzyme citrate permease
  • uses Simmon's Citrate agar in a slant tube
  • negative result = green
  • positive result = blue / can use citrate
  • differential and selective

Simmon's citrate agar

differential and selective medium that contains:


  • citrate - carbon source
  • ammonium salts - nitrogen source
  • bromthymol blue - pH indicator


only bacteria that synthesize the enzyme citrate permease will grow on this medium


green = negative blue = positive

Which bacteria were used in this experiment?

E. coli


Enterobacter aerogenes


Klebsiella pneumoniae

Examples of differential media

PRB, SIM Agar, MRVP

Examples of selective media

Simmons Citrate, PE Agar