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78 Cards in this Set

  • Front
  • Back

Molecular biology

The study of the heredity at the molecular level.

What did scientists first think was the basis for hereditary material, and why?

Scientists first thought proteins were the basis for genetic material, as proteins are more complex, having 20 different amino acid building blocks compared to DNA's 4.

Who first discovered DNA's genetic role, and who found the first convincing evidence for it?

DNA's genetic role was first discovered in 1928 by Frederick Griffith, while scientists Hershey and Martha Chase conducted the experiment that confirmed Griffith's findings.

Bacteriophages (phages for short)

Viruses that exclusively infect bacteria.

What convinced Hershey and Chase that DNA, rather than protein, is the genetic material of phage T2?

Radioactively labeled phage DNA, but not labeled protein, entered the host cell during infection and directed the synthesis of new viruses.

Nucleotides

The monomers for DNA and RNA

Polynucleotide

A nucleotide polymer

Sugar-phosphate backbone

A sugar molecule connected to a phosphate group, which is in turn connected to another sugar, ect.

Deoxyribonucleic acid

The full name for DNA.

Pyrimidines

Nucleotides that are single-ring structures. Pyrimidines consist of thymine (T) and cytosine (C).

Purines

Nucleotides that are double-ring structures. Purines consist of adenine (A) and guanine (G).

What are the three main differences between DNA and RNA?

1. DNA=Deoxyribose, RNA=Ribose


2. DNA=ATGC, RNA=AUGC


3. DNA=Double-stranded, RNA=Single-stranded

DNA helicase?

An enzyme that unzips your genes, if you know what I mean ( ͡° ͜ʖ ͡°) ( ͡° ͜ʖ ͡°)

What is multiple replication and what is it's purpose?

DNA Helicase unzips in opposite directions, forming "replication bubbles." This allows for faster replication.

RNA Primase

An enzyme that drops RNA code onto a single DNA strand to identify the replication start point.

DNA Polymerase III

An enzyme that adds nucleotides, starting at the RNA start point, in a 5'--->3' direction.

DNA Polymerase I

An enzyme that replaces RNA nucleotides with DNA nucleotides.

DNA Ligase

An enzyme that fuses Okazaki fragments.

Semiconservative model

When DNA replicates, the daughter molecules will consist of one old DNA strand and one new one.

Transcription

The synthesis of RNA under the direction of DNA.

Translation

The synthesis of protein under the direction of RNA.

Triplet code

Three nucleotides in a sequence code for one amino acid.

Codon

A three base "word" in DNA and RNA that codes for one amino acid.

Promoter

The "start transcribing" signal in DNA.

Terminator

The sequence of bases in DNA that tells RNA polymerase to stop transcribing and detach from DNA, leading to a completed RNA gene ready for translation.

RNA Polymerase

The enzyme that transcribes DNA and creates a corresponding RNA molecule.

mRNA

A type of RNA that conveys genetic information from DNA to the translation machinery of the cell. It is created in transcription.

Introns

Segments of mRNA that are removed before translation.

Exons

Segments of mRNA that are kept and spliced together during translation.

tRNA

A type of RNA that translates the words of nucleic acids to the amino acid words of proteins.

Anticodon

A base triplet of a tRNA molecule that couples the tRNA to a complementary codon in the mRNA.

Ribosomes

Structures in the cytoplasm that position mRNA and tRNA close together and catalyze the synthesis of polypeptides.

rRNA

A type of RNA that combines with proteins to make a ribosome.

P site

Site that holds the growing polypeptide chain.

A site

Site that accepts a new tRNA molecule with the appropriate amino acid attached.

Codon recognition

The first step in elongation. The anticodon of an incoming tRNA molecule, carrying it's amino acid, pairs with the mRNA codon in the A site of the ribosome.

Peptide bond formation

The second step in elongation. The polypeptide separates from the P site and attaches to the amino acid in the A site.

Translocation

The third and final step in elongation. The P site tRNA leaves the ribosome, and the ribosome moves the remaining tRNA to the P site. The anticodon and anti-codon remain bonded, so the mRNA and tRNA move as a single unit.


Initiation

The first part of translation. The initiator tRNA bonds to the start codon, starting the amino acid chain.

Termination

The final step in Translation. When the stop codon reaches the ribosome's A site, the polypeptide is freed from the last tRNA, and the ribosome splits back into it's separate subunits.

Silent mutation

When a substitution mutation changes a codon, but the new codon still codes for the same protein.

Missense mutation

When a substitution mutation changes a codon, and the new codon now codes for a different protein.

Nonsense mutation

When a substitution mutation change an amino acid codon into a stop codon, making the protein terminate prematurely, screwing everything up!

Reading frame

The triplet groupings of the message. Any time a nucleotide deletion or insertion occurs, the reading frames of the mRNA downstream will be altered.

Insertion mutation

When a nucleotide is added to the mRNA, altering the reading frame of everything "downstream" of the message.

Deletion mutation

When a nucleotide is removed from the mRNA, altering the reading frame of everything "downstream" of the message.

Mutagenesis

The production of mutations. Spontaneous mutagenesis is often the result of errors during DNA replication or recombination. Other times, mutagenesis is caused by physical or chemical agents, known as mutagens.

Mutagens

Physical or chemical agents that cause mutations.

Virus

A virus is pretty much just "genes in a box:" an infectious particle consisting of a bit of nucleic acid wrapped in a protein coat called a capsid and, inn some cases, a membrane envelope.

Capsid

A protein coat that holds the nucleic acid in a virus.

Lytic cycle

When a phage inserts it's DNA into a cell, phage DNA and proteins are synthesized inside of it, assemble, and break out, destroying the cell.

Lysogenic cycle

When a phage inserts it's DNA into a cell, and the phage DNA inserts into the cell's DNA. The cell replicates, duplicating the phage's DNA. Often, this virus will lurk inside cells for a long time before causing damage.

Emerging viruses

Viruses that appear suddenly or are new to medical scientists

What are three ways that emerging viruses appear?

Mutation, contact between species, and spread from isolated populations.

Reverse transcriptase

An enzyme carried by HIV that catalyzes reverse transcription, the flow of genetic information backward from RNA to DNA.

Retroviruses

Viruses that use reverse transcription to make DNA that inserts itself into the chromosomal DNA, which in turn creates more virus RNA that spreads the virus.

Viroids

Small circular RNA molecules that infect plants. They don't encode proteins, instead using cellular enzymes to replicate. They cause errors in regulatory systems that control plant growth.

Prions

Small infectious proteins that cause degenerative brain diseases in animals. They are misfolded forms of proteins present in brain cells, and converts other forms of the protein to misfolded versions, causing the brain to clump and leading to loss of brain tissue. Remember, they have no nucleic acid!

What are the three ways that bacteria can transfer DNA?

Transformation (the uptake of foreign DNA from the surrounding environment), transduction (the insertion of DNA into a bacteria cell by a bacteriophage), and conjugation (the physical union of two bacteria and the subsequent transfer of DNA from the Donor cell to the Recipient cell).

Transformation

One way bacteria transfer DNA. Foreign DNA fragments enter the cell, and join with the bacterial chromosome.

Transduction

One way bacteria transfer DNA. During a lytic infection, a fragment of DNA is mistakenly placed in a phage's coat instead of the phage's DNA. When the phage infects a new bacterial cell, the DNA stowaway from the former host cell is injected into the new host.

Conjugation

One way bacteria transfer DNA. Two bacteria cells, the donor cell and the recipient cell, are physically joined by the sex pili, hollow appendages that belong to the donor cell. The outside layers of the cell fuse, forming a "mating bridge" that the donor cell's DNA passes through. As the donor cell transfers it's DNA, it also replicates it, so it doesn't lose any genes.

F factor

A specific piece of DNA that caries genes for making sex pili and other requirements for conjugation. Essentially determine's the bacteria's ability to mate.

Plasmid

A small, circular DNA molecule separate from the bacterial chromosome. Contain's the bacteria's F factor, genes that determine it's ability to conjugate (mate with other bacteria).

R plasmids

Plasmids that cary genes for enzymes that destroy antibiotics.

Gene regulation

The turning on and off of genes in response to environmental changes.

Gene expression

The process by which genetic information flows from genes to proteins.

Operator

A section of DNA in between the promoter and specific genes. When a repressor is active (in the case of lactose digestion, this occurs when no lactose binds to it), it binds to the promotor and prevents the RNA polymerase from binding to the promotor, thus blocking it from transcribing the genes.

In the lac operon, when is the repressor active?

When lactose is NOT bound to it.

In the trp operon, when is the repressor active?

When Tryptophan IS bound to it.

Activators

A type of operon that is the opposite of a repressor. It binds to the DNA to make it easier for RNA polymerase to bind to the promotor, instead of blocking the RNA polymerase.

Differentiation

A process that cells undergo to become specialized in structure and function. Caused by gene regulation varying between cells.

DNA packing

The wrapping of DNA in tight or loose areas to make it easier or harder for RNA polymerase to access the DNA, thus controlling gene expression.

Histones

Little protein balls that DNA wraps around

Nucleosome

Eight histones that form a square, that DNA wraps around

Chemical modification

A method of gene regulation, in which enzymes at a methyl group to DNA bases, deactivating them. Once a gene is methylated, it usually stays that way; in fact, methylated genes can be inherited in a process called epigenetic inheritance.

X chromosone inactivation

In a female mammal, one of their two X chromosomes is deactivated, and is condensed into a compact object called a Barr body. This leads to a phenom

Barr body

A deactivated, compacted X chromosome in a female.