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200 Cards in this Set

  • Front
  • Back
cells become specialized in structure and function
Cellular Differentiation
What happens to certain genes in the process of gene regulation?
certain genes are turned on (to start making proteins) or off (to stop making proteins)
When a gene is turned on and transcribed into RNA and information flows from genes to proteins and genotype to phenotype; info flowing from DNA to Proteins
Gene expression
The great difference between cells in an organism is a result of this.
Selective Expression of Genes
a cluster of genes with related functions and the control sequences that turn the genes on or off
operon
a cluster of genes with related functions and the control sequences that turn the genes on or off
Lac Operon
What three things are used by a lac operon?
-promoter
-operator
-repressor
a control sequence where the transcription enzyme attaches and initiates transcription
promoter
a DNA segment that acts as a switch that is turned on or off
operator
binds to the operator and physically blocks the attachment of RNA polymerase and transcription.
repressor
What should you think of when you see an RNA Polymerase?
operator
what does a repressor gene make?
repressor proteins
what does lactose do to the repressor protein(s)?
changes the shape
What do cells use DNA packing for?
long-term inactivation of genes
process that takes place early in embryonic development, occurs in female mammals, and is when one of the two X chromosomes in each cell is inactivated at random
X Chromosome Inactivation
In X Chromosome Inactivation, what happens to the X chromosomes in the descendants?
the descendants of each cell will have the same X chromosome turned off
what will happen If a female is heterozygous for a gene on the X chromosome?
about half her cells will express one allele and the others will express the alternate allele
The most important stage for regulating gene expression
Transcription
what happens to regulatory proteins in pro and euk cells?
they bind to DNA and turn the transcription of genes on and off
proteins in eukaryotes that bind to enhancers during Transcription
transcription factors
DNA sequences that transcription factors bind to during transcription in eukaryotes
Enhancers
The most important stage for regulating gene expression
cross cell boundaries
secreted chemicals produced and used by cells that affect gene regulation in another cell
Hormones
master control genes that regulate groups of other genes that determine what body parts will develop in which locations
Homeotic Genes
all of these types of cells contain a complete genome and have the potential to express all of an organism’s genes
Differentiated cells
What is unique about differentiated plant cells?
they can develop into a whole new organism
what can be done with somatic cells of a single plant?
cross cell boundaries
demonstrates that cell differentiation in plants is reversible and does not cause irreversible changes in the DNA
Plant Cloning
the regrowth of lost body parts
Regeneration
When cells in the stump of a limb reverse their differentiated state, divide, and then differentiate again to give rise to a new leg
Regeneration
process that involves replacing the nucleus of an egg cell with the nucleus from a differentiated cell from an adult body and allowing the egg to develop into an adult
Nuclear Transplantation
by replacing the nucleus of an egg cell with the nucleus of an adult somatic cell; results in the birth of a new animal
Reproductive Cloning
process used not to produce a viable organism but to produce embryonic stem cells.
Therapeutic Cloning
derived from blastocysts and can give rise to all the specialized cells in the body
ES Cells (Embryonic Stem)
cells in adult tissues and generate replacements for some of the body’s cells
Adult Stem Cells
How are ES Cells and Adult Stem Cells different?
AS Cells are partway along to differentiation and usually give rise to only a few related types of specialized cells
genes that cause cancer and found in viruses
Oncogenes
process that involves replacing the nucleus of an egg cell with the nucleus from a differentiated cell from an adult body and allowing the egg to develop into an adult
cloning
Caner type which will afflict 150,000 Americans this year
Colon Cancer
cancer that is usually not associated with inherited mutations
Breast Cancer
name 3 carcinogens (cancer-causing agents)
Tobacco, Alcohol, UV light from the sun
the manipulation of organisms or their components to make useful products and has been used for thousands of years to selectively breed livestock for desired traits
Biotechnology
constructed when scientists combine pieces of DNA from two different sources to form a single DNA molecule.
Adult Stem Cells
the direct manipulation of genes for practical purposes
genetic engineering
human insulin that was produced by genetically modified bacteria and is used today by more than 4 million people with diabetes; world's 1st genetically engineered pharmaceutical product sold in 1982
Humulin
harmless variants or derivatives of a pathogen used to prevent infectious diseases
vaccines
medically valuable molecule/hormone which stimulates the production of red blood cells
erythropoietin (EPO)
organisms that have acquired one or more genes by artificial means.
genetically modified (GM) organisms
organism that contains a gene from another organism, typically of another species
transgenic organism
Can transgenic animals be sold as food like transgenic plants are?
NO
the workhorses of modern biotechnology
bacteria
biologists use these small, circular DNA molecules that replicate separately from the larger bacterial chromosome to work with genes in a lab
bacterial plasmids
DNA carriers that move genes from one cell to another
vectors
the direct manipulation of genes for practical purposes
Plasmids
the production of multiple identical copies of a gene-carrying piece of DNA
gene cloning
can help biologists produce large quantities of a desired protein
Recombinant DNA techniques
produced by combining two ingredients:

a bacterial plasmid and

a gene
Recombinant DNA
To combine the ingredients, what must happen to DNA to become recombinant DNA?
a piece of DNA must be spliced into a plasmid
proteins which cut DNA at specific nucleotide sequences (restriction sites)
genetically modified (GM) organisms
pieces of DNA with “sticky ends” important for joining DNA from different sources.
restriction fragments
process accomplished by using restriction enzymes and producing restriction fragments
DNA splicing
connects the DNA pieces into continuous strands by forming bonds between adjacent nucleotides
DNA ligase
can be used to determine if two samples of genetic material are from a particular individual and has rapidly revolutionized the field of forensics, the scientific analysis of evidence from crime scenes
DNA profiling
How do scientists produce a DNA profile?
scientists compare sequences in the genome that vary in people
used to test the guilt of suspected criminals, identify tissue samples of victims, resolve paternity cases, identify contraband animal products, and trace the evolutionary history of organisms
DNA profiling
a technique to copy quickly and precisely a specific segment of DNA and can generate enough DNA, from even minute amounts of blood or other tissue, to allow DNA profiling\
The polymerase chain reaction (PCR)
compares the lengths of DNA fragments and uses gel electrophoresis
STR analysis
a method for sorting macromolecules—usually proteins or nucleic acids—primarily by their electrical charge and size
Gel Electrophoresis
analysis, in which DNA molecules are exposed to a restriction enzyme, producing fragments that are compared and made visible by gel electrophoresis
RFLP analysis
produced by combining two ingredients:

a bacterial plasmid and

a gene
Comparative Anatomy
The first targets of genomics research
Bacteria
massive scientific endeavor to determine the nucleotide sequence of all the DNA in the human genome and identify the location and sequence of every gene
Human Genome Project
method, in which the entire genome is chopped into fragments using restriction enzymes, all the fragments are cloned and sequenced, and computers running specialized mapping software reassemble the millions of overlapping short sequences into a single continuous sequence for every chromosome
Whole-Genome Shotgun Method
What 3 observations did Charles Darwin make from his studies?
Life shows rich diversity.

There are similarities in life that allow classification of organisms into groups within broader groups.

Organisms display many ways in which they are suited for their environments
process in which organisms with certain inherited characteristics are more likely to survive and reproduce than individuals with other characteristics
DNA splicing
What happens to a population as a result of natural selection?
a population changes over generations to adapt to their environment
a population’s increase in the frequency of traits suited to the environment as a result of natural selection
Evolutionary Adaptation
a change in the genetic composition of a population over time or, the entire biological history
Evolution
imprints or remains of organisms that lived in the past; often found in sedimentary rocks
Fossils
Scientist that proposed that an organism's acquired traits were inherited by its parents using or not using its body parts
Lamarck
Scientist that suggested that Earth is very old and was sculpted by gradual geological processes that continue today; was a strong influence to Darwin
Lyell
What two points did Darwin make in 'The Origin of Species'?
Organisms today descended from ancestral species.

Natural selection is the mechanism for descent with modification
What are the 5 lines of evidence in support of evolution?
-the fossil record
-biogeography
-comparative anatomy
-comparative embryology
-molecular biology
ordered sequence of fossils as they appear in rock layers,
reveals the appearance of organisms in a historical sequence, and fits with the molecular and cellular evidence that prokaryotes are the ancestors of all life
Fossil Record
the study of the geographic distribution of species
Biogeography
the comparison of body structure between different species and attests that evolution is a remodeling process in which ancestral structures become modified as they take on new functions
Genomics
the similarity in structures due to common ancestry and
illustrated by the remodeling of the forelimbs of mammals for different functions
Homology
remnants of features that served important functions in an organism’s ancestors
Vestigial Structures
Comparing early stages of development in different animal species to reveal additional homologous relationships
Comparative Embryology
What two things do biologists look at to compare evolutionary relationships among organisms?
proteins and genes
Darwin based his theory of natural selection on what two key observations?
Life shows rich diversity.

There are similarities in life that allow classification of organisms into groups within broader groups.

Organisms display many ways in which they are suited for their environments
What does overproduction of offspring lead to?
competition
What can be inferred from Darwin's two observations on NS in regards to reproduction?
Unequal reproductive success
The smallest biological unit that can evolve
populations
The total collection of alleles in a population at any one time
gene pool
When the relative frequency of alleles changes over a number of generations
evolution
What two processes result in genetic variation
Mutations and Sexual Recombination
changes in the nucleotide sequence of DNA
mutations
the shuffling of alleles during meiosis
sexual recombination
formula used to calculate the frequencies of genotypes in a gene pool from the frequencies of alleles
The Hardy-Weinberg Formula
the population’s gene pool is constant over time
genetic equilibrium

or

Hardy-Weinberg equilibrium
What are the 5 lines of evidence in support of evolution?
microevolution
What are the 3 main causes of evolutionary change?
genetic drift, gene flow, natural selection
of the 3 main causes for evolutionary change, which one is the only process that promotes adaptation?
Natural Selection
a change in the gene pool of a small population due to chance; luck
Genetic Drift
an example of genetic drift and results from a drastic reduction in population size
The Bottleneck Effect
when a few individuals colonize an isolated habitat; explains the relatively high frequency of certain inherited disorders in some small human populations
Homology
genetic exchange with another population, may result in the gain or loss of alleles, and tends to reduce genetic differences between populations
Gene Flow
the contribution an individual makes to the gene pool of the next generation relative to the contributions of other individuals
Relative fitness
selection that shifts the overall makeup of a population by selecting in favor of one extreme phenotype.
Directional selection
selection that can lead to a balance between two or more contrasting phenotypic forms in a population
Disruptive Selection
selection that favors intermediate phenotypes, occurs in relatively stable environments, and is the most common.
Stabilizing selection
a form of natural selection in which individuals with certain traits are more likely to obtain mates
Sexual selection
a distinction in appearance between males and females not directly associated with reproduction or survival
Sexual dimorphism
the process in which one species splits into two or more species
Speciation
A group of populations whose members have the potential to interbreed with one another in nature to produce fertile offspring
species
prevent mating or fertilization between species; include temporal isolation, habitat isolation, behavioral isolation, mechanical isolation, and gametic isolation
Prezygotic barriers
When the relative frequency of alleles changes over a number of generations
interspecies mating occurs

and

hybrid zygotes form
Postzygotic barriers include what 3 things?
reduced hybrid viability, reduced hybrid fertility, and hybrid breakdown
When species form by geographic isolation
allopatric speciation
When species form without geographic isolation
sympatric speciation
Give an example of allopatric isolation
When an earthquake separates an area of land, isolating populations
speciation that occurs in populations that live in the same geographic area
The Hardy-Weinberg Formula
Give an example of Sympatric Speciation
An accident during cell division that results in an extra set of chromosomes in plants
How do polypoid species arise?
hybridization of two parent species
What are the two paces of speciation?
Gradual Pattern, Punctuated Equilibrium Pattern
pattern in which big changes (speciations) occur by the steady accumulation of many small changes
Gradual Pattern
pattern, in which there are long periods of little apparent change (equilibria) interrupted (punctuated) by relatively brief periods of rapid change
Punctuated Equilibria Pattern
evolutionary developmental biology; is the study of the evolution of developmental processes in multicellular organisms
Evo-Devo
the most common method for dating fossils,is based on the decay of radioactive isotopes, and helped establish the geologic time scal
Radiometric dating
How was Pangaea formed?
plate movements
explains why Mesozoic reptiles in Ghana (West Africa) and Brazil look so similar and how marsupials were free to evolve in isolation in Australia
Plate Tectonics
occurred at about the time the merging continents formed Pangaea (250 million years ago) and claimed about 96% of marine species
Permian Mass Extinction
the contribution an individual makes to the gene pool of the next generation relative to the contributions of other individuals
Relative Fitness
classifying organisms and determining their evolutionary relationships
Systematics
identification, naming, and classification of species
Taxonomy
proposed the current taxonomic system based upon a two-part name for each species and hierarchical classification of species into broader groups of organisms
Linnaeus
a two part Latinized name assigned to each species
binomial
What does a Binomial consist of?
Sexual selection
The goal of systematics
to have classification reflect evolutionary relationships
reflects variations of a common ancestors and are one of the best sources of info used to develop phylogenetic trees and classify organisms according to their evolutionary history
Homologous structures
involves superficially similar structures from different evolutionary branches that result from natural selection shaping analogous adaptations
Convergent evolution
Similarity due to convergence
Analogy
similarities used to develop phylogenetic trees and classify organisms according to their evolutionary history
Homologous Similarities
consists of an ancestral species and all its evolutionary descendants and forms a distinct branch in the tree of life
A Clade
organisms are grouped by common ancestry
Cladistics
When was earth formed?
4.6 billion years ago
When did prokaryotes appear?
3.5 billion years ago
When did eukaryotes first appear?
2.1 billion years ago
Give an example of allopatric isolation
Cambrian Explosion
When did plants and fungi first appear?
500 million years ago
all life today arises by the reproduction of preexisting life
biogenesis
until 1800's, common belief that life regularly arises from non-living matter
spontaneous generation
1st stage of the four-stage hypothesis of life
abiotic synthesis of organic monomers
2nd stage of the four-stage hypothesis of life
Abiotic Synthesis of Polymers
3rd stage of the four-stage hypothesis of life
Formation of pre-cells
have a selectively permeable surface, can grow by absorbing molecules from their surroundings, and swell or shrink when placed in solutions of different salt concentrations
pre-cells
4th stage of the hypothesis of life
Origin of self-replicating molecules
what did the first genes look like?
short strands of RNA
are found wherever there is life,

have a collective biomass that is at least ten times that of all eukaryotes,

thrive in habitats too cold, too hot, too salty, too acidic, or too alkaline for any eukaryote,

cause about half of all human diseases, and

are more commonly benign or beneficial
prokaryotes
name the 3 most common shapes of prokaryotes
spherical (cocci), rod-shaped (bacilli), spiral/curved
all prokaryotes are ___________
unicellular
reproduction of prokaryotes

by dividing in half by binary fission and

at very high rates if conditions are favorable
binary fission
thick-coated, protective cells

produced when the prokaryote is exposed to unfavorable conditions
endospores
organisms that obtain energy from light
phototrophs
classifying organisms and determining their evolutionary relationships
chemotrophs
Where do autotrophs obtain carbon from?
CO2
Where do heterotrophs obtain carbon from?
organic nutrients such as glucose
photoautotrophs and chemoheterotrophs are dominant in what kind of organisms
multicellular organisms
What are the two main branches of prokaryotic evolution?
bacteria and archaea
archaea that thrive in salty environments
Sexual selection
Archaea that inhabit in very hot water
Thermophiles
Archaea that inhabit the bottoms of lakes and swamps and aid digestion of cattle and deer
Methanogens
Bacteria and other organisms that cause disease
pathogens
produced by most pathogenic bacteria
poisons
proteins secreted into their environment by bacterial cells
Exotoxins
chemical components of the outer membrane of certain bacteria
Endotoxins
What are the best defenses against bacterial diseases?
sanitation, antibiotics, education
disease caused by bacteria carried by ticks and treated with antibiotics, if detected early
Lyme disease
bacterium considered to have dangerous potential as a weapon
Clostridium botulinum
exotoxin that blocks transmission of nerve signals that cause muscle contractions; deadliest poison on earth
botulinum
When did prokaryotes appear?
decomposition
the use of organisms to remove pollutants from water, air, and soil
Bioremediation
name two examples of bacteria as a positive decomposer
cleaning up petroleum and oil spills, decomposing sewage waste
eukaryotes that are not fungi, animals, or plants

mostly unicellular,

and ancestral to all other eukaryotes
Protists
How did eukaryotic cells evolve?
the infolding of the plasma membrane of a prokaryotic cell to form the endomembrane system

and endosymbiosis
general association between organisms of two or more species
biogenesis
refers to one species living inside another host species; process by which eukaryotes gained mitochondria and choloroplasts
Endosymbiosis
organisms that produce their food by photysynthesis; algae
autotrophs
protists that live primarily by ingesting food
protozoans
protozoans with flagella; free-living and some are parasites
flagellates
protists that are characterized by great flexibility in their body shape and the absence of permanent organelles for locomotion
Amoebas
temporary extensions of the cell; most species move and feed by this act
pseudopodia
shells used by other protozoans with pseudopodia
forams
protozoans that are named for thier use of cilia; include heterotrophs and mixotrophs
Ciliates
hair-like structures used to move and sweep food into the mouths of ciliates
cilia
photosynthetic protists whose chloroplasts support food chains in freshwater and marine ecosystems
algae
name the 3 most common shapes of prokaryotes
plankton
large, multicellular marine algae, grow on or near rocky shores, are only similar to plants because of convergent evolution, are most closely related to unicellular algae, and are often edible
seaweeds
normal genes with the potential to become oncogenes, found in many animals, and often genes that code for growth factors, proteins that stimulate cell division
proto-oncogenes