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88 Cards in this Set

  • Front
  • Back
number of naturally occuring elements
90
number of elements found in living organisms in substantial amounts
12
four elements that make up 96.3% of humans
carbon
hydrogen
oxygen
nitrogen
Ions
lost or gained electrons
isotopes
different number of neutrons
*unstable isotopes emit radiation=radioactiveisotopes
key to chemical behavior of atom
number and arrangemnet of its electrons in their orbitals
Bohr Model
electrons in discrete orbits
*models you use to draw on paper and show electron activity
orbital limit
no orbital can contain more than two electrons
how is electrons potential energy determined?
electrons farther from nucleus have more energy.
redox reactions
when one molecule is oxidized and while another is reduced in the same reaction
ionic bonds
formed by the attraction of oppositely charged ions
*gain or loss of electrons forms ions
covalent bonds
when atoms share 2 or more valence electrons
*results in no net charge, no unpaired electrons, satisfies octet rule.
single covalent bond
double covalent bond
shared pair of electrons
i.e. H--H
2 shared pairs (total 4 electrons)
i.e. O--O
octet rule
tend to fill valence shells
2 electrons in first level
8 alllowed in rest of levels
electronegativity
an atoms tendency to attract electrons and form thus form negative ions
nonpolar coval. bond
equal sharing of electrons (equal electronegativity)
polar coval bond
unequal sharing of electrons(unequal electronegativity)
chemical reactions
formation or breaking of chemical bonds
importance of water
life is inextricably(complexy tangled) tied to water
most outstanding chemical property of water
ability to form hydrogen bonds
hydrogen bonds
bond between partially negative O atoms and the partially postitive H atoms of two water molecules.
http://1.bp.blogspot.com/-2GhcoI0scaQ/TbmEeRWuYoI/AAAAAAAAAOk/ki1-Y2IS17Y/s1600/3D_model_hydrogen_bonds_in_water.jpg
polarity of water
bond between oxygen and hydrogen are highly polar.
cohesion
water molecules stick to other molecules
*hydrogen bonding
adhesion
water molecules stick to other polar molecules
*hydrogen bonding
properties of water
-high specific heat
-high heat of vaporization
-ice=less dense than liquid H2O
-good solvent
-organizes nonpolar molecules(i.e. oil)
-can form ions
acid
substance that dissociates in water to increase the H+ (lower pH)
i.e.hydrochloric acid
base
substance that combines with H+ dissolved in water and lowers H+
i.e. sodium hydroxide
buffers
-substance that resist changes in pH
-release hydrogen ions when base added
-absorbs hydrogen ions when acid added
*bicarbonate ion + hydrogen ion
framework of biological molecules consists primarily of carbon bonded to:
-other carbons
-O,N,S,P,or H
*can form up to 4 covalent bonds
hydrocarbons
molecules consisting of only carbon and hydrogen
*store energy, good for fuel
*nonpolar
*functional groups attach and add chemical properties (polarity, pH)
isomers
molecules with the same molecular or empirical formula
monomer
small, similar chemical subunits
polymer
built by linking monomers.
4 organic macromolecules
-carb
-nucleic acids
-proteins
-lipids
dehydration synthesis
-formation of large molecules by removal of water
-monomers join to form polymers
hydrolysis
*opposite of dehydration.
-breakdown of large molecules by addition of water
-polymers broken down to monomers
carbohydrates
-molecules with 1:2:1 ration carbon, hydrogen oxygen.
-good for storing energy
simple sugar
can have as little as three carbons, but those that are key to energy storage have six
polysaccharides
-formed by dehydration synthesis
-plants use starch
-animals use glycogen
*plants=cellulose
*anthropods/fungi+chitin
Nucleic acids
-polymer
-monomer
-polymer=nucleic acid
-monomer=nucleotide
nucleotide structure
sugar+phosphate+nitrogenous base=
purines and pyrimidines
DNA
-encodes info for amino acid sequence of proteins
-double helix (2 polynucleotide strands connected by hydrogen bonds)
-A&T
-C&G
RNA
-ribose, not deoxyribose
-A&U
-single polynucleotide strand
-uses info in DNA sequence amino acids in protein
NAD+ & FAD+
electron carriers for many cellular reactions
Amino acid structure
-amino group
-side chain/R group
-carboxyl group
-single hydrogen
protein function
-enzyme cataylsis
-defense
-transport
-support
-motion
-regulation
-storage
formation of peptide bond
- amino acids joined by dehydration synthesis=peptide bond
how to determine protein function
shape determines function
-primary structure
-secondary
-tertiary
-quaternary
chaperones
-proteins that help proteins fold correctly
-deficiencies in chaperones=cystic fibrosis
denaturation
-protein loses structure and function
due to change in
-pH
-temp
-ionic concentration
lipids
-insoluble in water
-high proportion of nonpolar c-h bonds=hydrophobic
fats
triglycerides
-composed 1 glycerol and 3 fatty acids
saturated
-no double bonds, high melt.
unsat
-1 or more double bonds,low melt
phospholipids
-glycerol
-2 fatty acids
-phosphate group
micelles
lipid molecules with polar head and nonpolar tail
who discovered cells
robert hooke
cell thoery
-all organisms are composed of cells
-cells are the smallest living things
-cells arise only from pre existing cells
prok and euk similarities
-nucleus where DNA is located
-cytoplasm
-ribosomes
-plama membrane
prokaryotic
-simplest organisms
-lack membbrane-bound nucleus
-cell wall outside of plasma membrane
two domains
-archaea & bacteria
bacteria cell walls
-protect cell, maintain shape, prevent excessice intake or loss of water
-archaea lack peptidoglycan
flagella
present in some prok cells and used for motion
eukaryotic
-posses membrane-bound nucleus
-compartmentalization via endomembrane system
-possess cytoskeleton for support
ribosomes
-cells protein synthesis machine
-free in cytoplasm or associated with intrnal membranes
endomembrane system
Rough ER
-Smooth ER
-Golgi apparatus
-Vesicles
*fundamental distinctions between euks and proks
Rough endoplasmic reticulum
-ribosomes attached;give rough look
-synthesis of proteins to be secreted
Smooth endoplasmic reticulum
-few bound ribosomes
-synthesis, store ca2+, detoxification
golgi apparatus
-flattened stacks of interconnected membranes
-collects, packages, and distributes molecules synthesized at one location and used at another
lysosomes
Enzymes catalyze breakdown of macromolecules and destroy cells or foreign matter
microbodies
include peroxisome
-oxidize fatty acids
vacuoles
-central vacuole, contractile vacuole and storage vaculoes
mitochondria
-proteins carry out oxidative metabolism
*metabolizes sugar to generate ATP
chloroplast
-contain chlorophyll for photosynthesis
-2 membranes
*use light to generate ATP and sugar
cytoskeleton
network of protein fibers
-support shape of cell
-keep organelles in fixed locations
-microfilaments(actin)
-microtubles
-intermediate fibers
centrosomes
-plants and fungi lack this
-microtubule organizing center
cell movement
actin filaments
microtubules
or both
euk cell walls
plants and protist
-cellulose
fungi
-chitin
cellular respiration
-oxidation of organic compounds to extract energy from chemical bonds
-
dehydrogenation
-loss of hydrogen atom
redox
-tranfer of electrons that carry energy with them
NAD+
electron carrier
-accepts 2 electrons and 1 proton=NADH
-reversible
ATP
-cells use ATP to drive endergonic reactions
oxidation of glucose
-glycolysis
-pyruvate oxidation
-krebs cycle
-electron transport chain & chemiosmosis
glycolysis
-converts 1 glucose to 2 pyruvate
-10 step biochemical pathway
-net energy production
2atp
2nadh
NADH must be recycled
-aerobic respiration
-fermentation
pyruvate oxidation
-occurs in mitochondria or plasma membrane
3 carbon pyruvate molecule:
1 CO2
1 NADH
1 Acetyl CoA
krebs cycle
-oxidizes acetyl group from pyruvate
after krebs
glucose has been oxidized to
-6 CO2
-4ATP
-10NADH
-2FADH2
electron transport chain
-electrons from NADH & FADH2 are transferred to complexes of the ETC
Chemiosmosis
-uses gradient to produce atp
-