• Shuffle
    Toggle On
    Toggle Off
  • Alphabetize
    Toggle On
    Toggle Off
  • Front First
    Toggle On
    Toggle Off
  • Both Sides
    Toggle On
    Toggle Off
  • Read
    Toggle On
    Toggle Off
Reading...
Front

Card Range To Study

through

image

Play button

image

Play button

image

Progress

1/117

Click to flip

Use LEFT and RIGHT arrow keys to navigate between flashcards;

Use UP and DOWN arrow keys to flip the card;

H to show hint;

A reads text to speech;

117 Cards in this Set

  • Front
  • Back
What is R?
R – The Reproductive Number. The number of new infectious organisms (or infected cells) produced during each period of replication of the organism
What is the relationship between drug resistance and R?
A resistant organism is one whose R value is >1 in the presence of an antimicrobial drug. Eventually the resistant organism will outgrow the wild-type organism and establish a new steady-state. The resistant organism has a growth advantage in the presence of the drug
Name 3 ways bacteria can exchange genetic information
Transformation – segments of DNA from donor bacteria are taken up from the extracellular environment by recipient bacteria and integrated into the recipient genome by recombination; Transduction – DNA is moved from one bacterial cell to another by a virus (bacteriophage); Conjugation – transfer of genetic material between bacteria through direct cell to cell contact
What is primary drug resistance?
Predates drug therapy; Drugs promote growth of resistant organisms by providing the necessary selective pressure; Effective therapy = treatment with a drug to which the organism is known to be sensitive, treatment with a combination of drugs where at least one drug component will reduce R to <1.0; Mostly due to improper use (or overuse) of antibiotics
What is secondary drug resistance?
Acquired resistance; Occurs during drug therapy; Some resistance mutations occur during therapy; If an effective drug is being taken correctly, R wil be <1.0 and secondary resistance will be unlikely to occur; If an effective drug is being taken irregularly/incorrectly, drug concentrations will decrease to levels adequate for survival and continued replication of resistant organisms; Low drug concentration provides the necessary selective pressure for the emergence of mutant variants with R>1.0; Most secondary resistance exists because of non-adherence to a prescribed drug regimen (usually involving multiple drugs)
Which major drug classes are susceptible to inactivation of drug as a mechanism of resistance?
Beta-lactams: Penicillins, Cephalosporins, Carbapenems, Monobactams
Which major drug classes are susceptible to inavtivation by target inactivation?
Glycopeptide Antibiotics, Clindamycin, Macrolides, Fluoroquinolones, Rifampin, Vanc
Which major drug classes are susceptible to inavtivation by efflux?
tetracyclines, beta lactams, fluroquinolones (less common), macrolides, dalfopristin
Define “virion”.
The virus particle; made up of viral nucleic acid and viral structural proteins; The structural proteins serve as the payload vehicle to deliver the nucleic acid
How are viruses classified?
Nucleic acid in the virion (RNA or DNA); Symmetry of the Capsid; Presence/absence of an envelope; Dimensions of the virion and the capsid
What are viral ‘quasispecies’ and how do they evolve?
Subsets of a given virus population that retain the same general architecture and genome and function the same way but differ slightly with respect to actual genetic sequence and coat protein structure (on account of mutation in genetic sequence); Subpopulations of viruses that are different than infecting virus; They evolve as a result of the rapid evolution of viruses, which stems from the large numbers of progeny produced by a given virus (increasing the number of opportunities for a mutation to arise, recombination/reassortment to occur) and the lack of a proofreading function of viral RNA polymerases (low fidelity replication leading to greater likelihood of mutation)
What are the major obstacles that a virus has to overcome to survive efficiently?
How to get all of the information necessary for replication into a small genome, How to be maintained in a population and not die out, How to have a structure that allows sufficient stability for transmission, but sufficient instability for cell infection
Describe interferon induction and action and list clinical side effects associated with interferon (either endogenous or exogenous)
Induction and Action: Sense viral nucleic acids (recognized as foreign because of unique nature – dsRNA, ssDNA – not found in host cells), Interferons bind to IFN receptors, which signal through the JAK-STAT pathway to induce antiviral protein genes; Clinical Side Effects FLU-LIKE: Fever (antiviral effect on most viruses), Malaise, Fatigue, Muscle Pain,
What are “neutralizing antibodies?
Neutralizing antibodies – antibodies that prevent the virus from infecting the host cells, Achieve this by blocking viral attachment (via steric interference, capsid stabilization, inducing structural changes), blocking endocytosis, and/or blocking viral uncoating (via capsid stabilization or fusion interference)
Why are neutralizing antibodies important in viral infections?
Prevent against viral reinfection, clear virus from fluids, and downregulate intracellular virus replication
T/F: RNA polymerases lack proofreading functions
T
T/F: RNA virus infections in humans are more likely to harbor viral quasi-species than DNA viral infections
T
T/F: DNA viruses must get into the nucleus of the cell to make use of the DNA polymerase of the host cell.
TRUE (RNA viruses need only penetrate the cytoplasm)
T/F: HCV infection is an example of an acute viral infection
FALSE – example of a persistent infection
T/F: HIV infection is an example of a latent viral infection
FALSE – example of a persistent infection
T/F: Herpes Simplex Virus is an example of a latent viral infection
T
T/F: Varicella zoster virus infection is an example of an acute viral infection
FALSE (latent)
Which hepatitis class (A,B,C,D,E) is most likely transmitted fecal-oral?
A,E
Which hepatitis class (A,B,C,D,E) is most likely transmitted by sex?
B,D
Which hepatitis class (A,B,C,D,E) is most likely transmitted by blood?
B,C,D
Which hepatitis class (A,B,C,D,E) is most likely transmitted perinatally?
B,D
Which is the most likely method of transmission for hepatitis A virus?
Fecal-oral
Which is the most likely method of transmission for hepatitis B virus?
Sexual, blood, perinatal
Which is the most likely method of transmission for hepatitis C virus?
Blood
Which is the most likely method of transmission for hepatitis D virus?
Sexual, Blood, perinatal
Which is the most likely method of transmission for hepatitis E virus?
Fecal-oral
T/F: Hepatitis C has a longer incubation period than hepatitis A (acute)
TRUE (6-300 days versus 2-6 days)
T/F: Hepatitis B is the most likely hepatitis virus to persist
FALSE (Hepatitis C – 70% versus 5% for B)
T/F: Hepatitis B is the most common cause of acute Hepatitis in the US
FALSE (Hepatitis A)
T/F: Jaundice is most frequently associated with HAV infection
TRUE (30-70% vs 20-40% for B, 15-25% for C)
T/F: The capsid protein of HAV elicits protective antibodies (can immunize against Hep A)
T
T/F: There is limited HCV diversity following infection
FALSE – HUGE amount of diversity post-infection
T/F: The body may clear hepatitis C infection without help
FALSE – huge diversity leads to persistence of HCV RNA
T/F: Interferon is used to treat HAV infection
FALSE – Interferon used to treat chronic hepatitis caused by HBV, HCV infection. No tx for acute Hep.
T/F: Sub-Saharan Africa and Far East Asia have very high Hepatitis B prevalence
T
T/F: Hepatitis D cannot cause Hepatitis without the presence of Hepatitis B co-infection
T
T/F: A vaccine against hepatitis A is available
T
T/F: A vaccine against Hepatitis B is available
T
T/F: A vaccine against Hepatitis C is available
FALSE – Wide genetic variability and high viral mutability make developing a vaccine prohibitively difficult
What other infections can cause hepatitis?
Generally, toxins, medication, and other infection can cause hepatitis in addition to viruses; Infections: Systemic viruses (cytomegalovirus, mononucleosis, EBV, measles, varicella zoster, adenovirus, HSV, coxsackievirus, HIV), Spirochetes (syphilis, leptospirosis), Toxoplasma, Rickettsia (Rocky Mountain spotted fever)
Which hepatitis virus is most often associated with fatality during pregnancy?
HEV
A patient presents with elevated liver function tests (ALT and AST). HAV IgG positive, HAV IgM negative; Hepatitis B surface antigen positive; Hepatitis B surface antibody negative; Hepatitis B core IgG positive; Hepatitis C IgG positive; Hepatitis C PCR negative. Which of the following statements is/are true: a)The patient has acute Hepatitis A b)The patient has chronic Hepatitis A c)The patient was previously infected with Hepatitis A d)The patient has active Hepatitis B infection (Chronic) e) The patient has a previous Hepatitis B infection but he cleared the infection f) The patient has a previous Hepatitis C infection but he cleared the infection g)The patient has active Hepatitis C infection
C, D,F
On a routine workup, a patient is found to have normal liver function tests. The physician, for some reason, orders a Hepatitis B surface antibody (IgG) and it is positive. Which of the following is/are true? a)The patient has active hepatitis B infection b)The patient has chronic Hepatitis B infection c)The patient had a past infection with hepatitis B that they cleared (possible – need to check for HBc antibodies) d)The patient never had hepatitis B but was previously vaccinated with the Hepatitis B vaccine
D
T/F: Parvovirus can only replicate in dividing cells
T
T/F: Transmission is via the gastrointestinal route (fecal-oral)
FALSE -- respiratory
T/F: The first phase of infection, no matter the host, is the viremic phase
T
T/F: The manifestations of the second phase of the infection depend on who the host is (immunocompromised, sickle cell patient, etc.)
T
T/F: An IMMUNOCOMPETENT adult usually gets transient arthritis and maybe a little anemia (and very occasionally an evanescent rash)
T
T/F: An IMMUNOCOMPETENT child usually gets a rash (slapped cheeks in appearance) and maybe a transient anemia.
T
T/F: Someone with sickle cell disease may get a more severe anemia
TRUE (transient aplastic crisis – severe acute anemia)
T/F: An IMMUNOCOMPROMISED adult (advanced HIV or transplant) may get severe anemia that requires transfusion and occasionally the use of IVIG (intravenous immunoglobulin which contains preformed antibodies against parvovirus B19) for treatment
TRUE (pure red cell aplasia – chronic anemia)
T/F: Hydrops fetalis is a devastating consequence of fetal infection
T
T/F: The greatest risk of ParvoB19 infection in pregnant women is in the 3rd trimester
FALSE (1st and 2nd)
T/F: HPV transmission is via the respiratory route
FALSE – wart abrasion or mucous membrane
T/F: HPV is the most prevalent STD in the world today
T
T/F: Low risk types of HPV (e.g. 6 and 11) cause cancer
FALSE – high-risk types (16,18) cause cancer
T/F: High risk types of HPV (16 and 18) cause warts
FALSE – LOW RISK types cause warts
T/F: Acquisition of HPV occurs very shortly after sexual debut
T
T/F: HPV L1 and L2 proteins are involved in replication
FALSE – L1 = major capsid protein; L2 = minor capsid protein
T/F: HPV E6 and E7 proteins are responsible for transformation
TRUE – E7 inhiits pRB (induces its degradation), removing check on transcription; E6 inhibits p53 by targeting it for ubiquitin mediated proteolysis
T/F: HPV is responsible for some cases of anal, vulvar, and penile cancers
T
T/F: Neutralizing antibodies against HPV LI are protective
T
T/F: There is a virus-like particle vaccine that has been approved for HPV recently but one of its side effects is the possibility of developing cancer
T
T/F: Up to 90% of HPV infections in young girls clear on their own by two years after infection
T
T/F: Malignant transformation occurs in HPV when integration disrupts E2 which controls the expression of E6 and E7
T
T/F: Most infections with high-risk types of HPV are symptomatic
FALSE – most are asymptomatic
T/F: The Pap smear has been an effective tool to decrease the rate of cervical cancer in the US
T
T/F: HIV+ patients infected with a high risk HPV are at higher risk of developing cancer than HIV negative patients
TRUE – takes them longer to clear the infection
Sexual transmission: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
Hepatitis C virus, HPV 16
Respiratory transmission: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
HPV 16, Parovirus B19
High-risk type: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
HPV 16
Transient aplastic crises: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
Parvovirus B19
Pure red cell aplasia: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
Parvovirus B19
Hepatocellular carcinoma: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
Hepatitis B Virus, Hepatitis C Virus
Fifth disease: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
Parvovirus B19
Slapped cheek: 1. Hepatitis B Virus, 2. Hepatitis C virus, 3. HPV 16, 4. Parvovirus B19?
Parvovirus B19
What are differences between negative and positive strand viruses?
Positive Strand Virus – has genome that can be sensed by immediately be sensed by ribosomes, translated; Negative Strand Virus – have genome that is “opposite polarity” – genome it not initially accessible to ribosome (need to first convert – strand to a + strand that can be sensed by ribosome); Positive-sense viral RNA is similar to mRNA and thus can be immediately translated by the host cell.; Negative-sense viral RNA is complementary to mRNA and thus must be converted to positive-sense RNA by an RNA polymerase before translation.; Purified RNA of a positive-sense virus can directly cause infection though it may be less infectious than the whole virus particle.; Purified RNA of a negative-sense virus is not infectious by itself as it needs to be transcribed into positive-sense RNA; however each virion can be transcribed to several positive-sense RNAs
What are the mechanisms behind antigenic drifts and shifts observed in influenza?
If different flu strains infect the same cell (one bird strain and one human strain infecting a pig cell, which is a permissive host for both, for example), the genetic material can replicate and then undergo reassortmet, which results in a virus with different external glycoproteins but internal machinery that allows for replication in human cells; Minor mutations of viral genome as a result of high replication rate and error prone RNA polymerase result in antigenic “drift” – functional glycoproteins but different enough structurally to allow for evasion of antibody binding because epitope that was recognized is altered.
What are hemagglutinin and neurominidase?
HA – trimeric protein with globular head on a stalk that binds cellular receptor sialic acid and mediates fusion of viral envelope with the host cell membrane; NA – tetrameric surface protein that cleaves sialic acid residues on the host cell surface, enabling viral exit
What are the clinical features of influenza?
Transmission: Respiratory, Seasonal, primarily winter; Symptoms: Appear 1-4 days post infection, HA, fever, myalgias, nonproductive cough, sore throat, no rhinorrhea, Last 3-7 days, Likely caused by local production of IFN and IL-1
What are some complications of influenza?
Primary virus infection – interstitial pneumonitis; Secondary bacterial pneumonia, Facilitated by damage to innate immune system (destruction of ciliated epithelial cells, abnormal macrophage function)
Compare and contrast seasonal influenza to H1N1 2009 infection.
VIRUS SHEDDING – prolonged compared to seasonal flu (4.5 days versus 107 hrs for mean time to 50% samples with viable virus), H1N1 2009 -- Shift from older to younger age groups for infection, hospitalization, mortality compared to seasonal flu, Shift in hospitalization from youngest (0-4 yrs) and oldest (65+ years) for seasonal flu to <49 years for H1N1 2009, Similar age shifts for illness and mortality compared to seasonal flu, Older age cohorts demonstrated pre-existing immunity to H1N1 2009 (usually not the case in seasonal flu), BUT – both causes influenza virus, caused similar symptoms
What kind of protection does the inactivated influenza vaccine provide? Killed (Inactivated) Vaccine (primarily HA, NA): Reformulated annually, WHO lab network isolates, identifies viruses
Strains reported to reference lab, Panel makes recommendation on viruses to include in upcoming year’s vaccine, Recommended for health care workers and population at high risk of morbidity and mortality, Provides PARTIAL protection, Decreases incidence of influenza 30-70%, Decreases morbidity and mortality 60-90%
What kind of protection does the live attenuated intranasal vaccine provide?
Live attenuated intranasal vaccine (FluMist): Replication restricted to nasopharynx, Cold adapted – grows best at intranasal temp(25C), Temperature sensitive – restricted replication at 37C, Reformulated annually, Approved for use in healthy people 5-49 YO
Do parmyxoviruses undergo epidemiologically important antigenic change?
No
Is there a natural reservoir for paramyxoviruses?
No natural reservoir, Maintained in population by continuous person to person spread,
How are parmyxoviruses spread?
Spread by respiratory route
Which proteins are present in parmyxoviruses?
Proteins: H – mediates receptor binding, F -- mediates fusion, M – required for assembly, Located at inner face of viral envelope, N – encapsidates genome, L – major catalytic subunit of polymerase, P – polymerase subunit, Genome
Describe the genome of parmyxovirus.
Nonsegmented – NPMFHL protein coding regions, mRNAs generated by polymerase reinitiation
Describe the surface glycoproteins of parmyxoviruses.
Surface Glycoproteins – carbohydrates attached during transit through ER and Golgi, Usually 2 proteins: Cell attachment protein (Binds attachment protein, Elicits neutralizing antibody, H, HN, G) Fusion Protein (F, To be active, F has to be cleaved into F1, F2 by intracellular proteases, Activation needed for virion infectivity)
Describe the replication cycle of parmyxoviruses.
Entry (Virions fuse at cell membrane (neutral pH)) Intracellular replication (All RNAs synthesized in cytoplasm, H/F transported thru ER/Golgi to PM), Exit (Nucleocapsids assemble below H/F, Virion assembly mediated by matrix protein, Virion budding from cell membrane OR: Fusion with adjacent cell, Surface proteins are fusogenic at neutral pH on cell membrane, Multinucleated giant cells seen in culture and in tissue)
What are common themes for parmyxoviruses? (look at viral seasons slide) (bad question)
Common Themes: Cause seasonal outbreaks, Cause severe diseases in young children and elderly, Infections recur throughout life, Disease less severe in older children/adults, Vaccines under development for some, Diagnosis: Direct visualization of antigens in specimens with fluorescent monoclonals, Culture (except human metapneumovirus), Nucleic acid amplification
What diseases does RSV cause?
In winter, respiratory disease; Generally, otitis media, bronchitis, bronchiolitis, croup, and pneumonia, Most severe disease in young infants
How do you catch RSV?
Come into direct contact with respiratory secretions
How does RSV spread?
Requires direct contact with respiratory secretions, Contact isolation prevents nosocomial transmission; Begins as upper respiratory infection, but can progress in severity – progressive dyspnea, increase RR, hypoxemia
Describe the epidemiology of measles infection.
Geographic distribution: Worldwide; incidence depends on vaccination rates, Epidemic – countries with high vaccine coverage, Endemic – countries with poor vaccination rates; Age – dist’n has changed in countries with high vaccination rates; Routes of transmission – respiratory, aerosol; Attack rate – 99.9%; Mortality rate – In developing countries, 30% in infants 6-9 months
Describe the pathogenesis of measles.
Systemic replication: First site – respiratory epithelium, Second site – local lymph nodes, Dissemination by infected monocytes departing from respiratory LNs (primary viremia), Epithelial/endothelial cells infected throughout body release virus into blood (secondary viremia)
Describe the clinical symptoms of measles.
Arise during VIREMIA, Prodrome – fever, cough, corzya, conjunctivitis, Koplik spots, Maculopapular rash arises with immune response, Manifestation of cellular response
Describe how measles can be prevented.
Live attenuated vaccine, Given to infants 12-15 months of age, Has changed age dist’n of infection, Now very young infants and older children/young adults (10-22 years)
Describe the clinical manifestations of mumps.
Clinical Manifestations: Infection of glandular epithelial cells, Parotitis, orchitis most commonly recognized, Pancreatitis and ovarian infection occur, but infrequently recognized, Meningitis ~10% of cases
Describe prevention of mumps.
Live attenuated vaccine
How do you get rabies?
Via saliva from bite of infected animal
What are the symptoms and signs of rabies?
Prodrome – fever, malaise, parathesias at bite site, Later – anxiety, aggressive behavior, seizures, hypertonia, paralysis
How do you prevent rabies?
Inactivated vaccine, Long incubation period allows for post-exposure use, Pre-exposure immunization in vocations with high risk of exposure (veterinarians, wildlife managers)
Why is a single anti-tubercular drug useful to treat a patient with latent TB infection but not so to treat active TB?
Viral load! 1 in 106-108 organisms resistant, latent viral load only 104-105
How do mycobacteria acquire drug resistance?
Chromosomal mutation, not plasmids or transposable elements. Non-compliance!
What is the mechanism of action of isoniazid (INH)? What is the mechanism of resistance to INH? What are its toxicities?
Mechanism: Bacteriacidal when dividing, nicotinamide analog, inhibits synthesis of mycolic acids, higher conc. Inhibit glycolysis, form O free radicals. Resistance: katG: enzyme that activates drug; inhA: binds nicotinamide and synthesizes mycolic acid. Toxicity: hepatitis, peripheral neuropathy, hypersensitivity rxns, drug-induced lupus
What is the mechanism of action of rifampin (RIF)? What is the mechanism of resistance to RIF? What are its toxicities? (very similar to Rifabutin)
Mechanism: inhibitor of bacterial DNA-dependent RNA polymerases, bacteriacidal against most gram+, some gram-, . Resistance: RNA polymerase mutations, arises fast as single agent. Toxicities: orange discoloration of urine, sweat, tears, soft contact lenses; hepatitis; hypersensitivity rxns (flu-like); Light-chain proteinuria in >50% of patients; Drug-drug interactions (Potent enzyme inducer)
What is the mechanism of action of Pyrazinamide (PZA)? What is the mechanism of resistance to PZA? What are its toxicities? Is it effective in treating latent TB infection?
Mechanism: bacteriacidal, nicotinamide analog like INH, active in acidic pH, good for intracellular TB. Resistance: mutation in pyrazinamidase enzyme (pncA) which activates drug. Toxicities: hepatotoxicity, hyperuricemia >50% ptns, photosensitivity dermatitis (rare). Not effective at latent/dormant TB
What is the mechanism of action of Ethambutol (EMB)? What is the mechanism of resistance to EMB? What are its toxicities?
Mechanism: bacteriostatic, inhibits RNA synthesis and mycolic acid metabolism . Toxicities: peripheral neuropathy, retrobulbar optic neuritis, color blindness, peripheral vision loss
What are some principles of antimycobacterial therapy that allow DOT?
Slow growth of mycobacteria and characteristics of bactericidal drugs allows intermittent therapy. Administered 2-3x per week
What is the mechanism of action of Dapsone? What is it used to treat? What are its toxicities.
Mechanism: sulfone (sulfanilamide analog), inhibits folate synthesis, resitance extensive. Use: Pneumocystis carinii/jiroveci. Toxicities: hemolytic anemia, methemoglobinemia & subclinical hemolysis, hypersensitivity rxns (rash, fever), agranulocytosis & fatal mono-like syndrome (rare), reversal rxns & erythema nodosum leprosum during intiation