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241 Cards in this Set

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What is meant by "membranes are ubiquitous" and why are they?

Membranes are essential for life - ALL organisms have them



What are membranes essential

Compartmentalise internal and external environments

What are the functions of membranes

1. Separate and isolate internal environments


2. Energy production


3. Signalling


4. Intelligent barrier (transport)

What are membranes made from?

Phospholipid bilayer

How do membranes self form?

1.Phospholipids are polar - hydrophobic and hydrophilic ends


2. Hydrophobic ends form inside bilayer


3. Hydrophilic ends form outside bilayer


4. Most energetically stable way to reduce contact of hydrophobic ends to aqueous environment.



What role do membranes play in energy generation

They provide a semi-permeable barrier


Create a concentration gradient of ions


As ions diffuse through channels drives synthesis of ATP from ADP

What is the lipid transition temperature

The temperature a particular lipid changes state from liquid to solid.

What can affect the lipid transition temperature?

Fatty acid tail length


Saturation

What role does saturation play in lipid transition temperature?

Unsat fats = C-C double bond


Creates kinks in tails


Cannot pack as tightly


Weaker interactions


Liquid at lower temperatures

What role does fatty acid tail length play in lipid transition temperature?

The longer the fatty acid tail the more van der Waals interactions between each lipid.


Greater temperature is required to separate


Solid at higher temperatures

What implications does habitat have on the likely lipid type found in the organism that resides there?

In cold environments organisms are likely to have membranes which are short tailed and unsaturated.



In warm environments organisms are likely to have membranes which are long tailed and saturated

What is the only species of bacteria not to have a cell wall?

Mycoplasma

What is the function of a cell wall?

To prevent cells lysing from their own internal pressure


Mechanical support

Is creating an antibiotic to target a cell wall good or bad. Why?

Good,


as animal cells don't have cell walls will not harm host.

What is characteristic of a gram positive bacteria?

1. Thick peptidoglycan cell wall


2. Teichoic and Lipoteichoic acids throughout wall


3. Cell membrane beneath

What is characteristic of gram negative bacteria?

1. Thin peptidoglycan cell wall


2. Lipopolysaccharides


3. Outer and inner membranes

Once stained with gram stain, what colour are gram positive bacteria?

Purple

Once stained with gram stain, what colour are gram negative bacteria?

Pink/Red

What is the gram staining process?

1. Crystal violet dye - penetrates cell wall of both bacteria


2. Iodine wash - forms large complexes with crystal violet


3. Alcohol decolourising wash - washes CV complex from beneath thin peptidoglycan wall in gram negative


4. Counterstain - safranin turns decolourised cells pink

What is the basic structure of peptidoglycan

Alternating Nag-Nam pattern linked by beta(1,4)glycocidic bonds


Cross linked by peptide bridges



Who discovered both lysozyme and penicillin

Fleming

What bond does lysozyme target?

Beta (1,4) glycocidic bond

What does Nag stand for?

N-acetylglucosamine

What does Nam stand for?

N-acetylmuramic acid

Do the peptide cross links in peptidoglycan run Nag>Nag, Nam>Nam or Nag>Nam

Nam>Nam

Why do both penicillin and lysozyme have a greater effect on gram positive bacteria?

Greater amount of peptidoglycan in gram +ve

Which enzyme does penicillin target?

Transpeptidases

What is the function of the enzyme that penicillin targets

Transpeptidases build the interpeptide bridge in peptidoglycan

What is an endotoxin? Give an example

Endotoxin is released by bacteria and elicits a strong immunological response.




Eg. Lipopolysaccharide

What syndrome is the release of LPS associated with?

Septicemic shock and Toxic Shock Syndrome

What is an S layer?

A mono-molecular surface layer in bacteria formed from proteins

What are capsules composed of

polysaccharides

Are capsules more common in gram +ve or gram -ve bacteria?

Gram negative

Name 2 differences between archaea and bacteria?

1. Archaea cell walls do not contain peptidoglycan


2. Archaea membranes have a different composition



What are 4 differences between the cell membranes of bacteria and archaea?

1. Chirality of glycerol


2. Ether linkage


3. Branched fatty acid chains


4. Continuous tails

What is different between the chirality of the glycerol in archaic membranes?

In EuK and bacteria D-glycerol


In Archaea L-Glycerol



(the phosphate group is on a different carbon atom)

Do archaea or bacteria have Ester linked phospholipids?

Ester = EuK and bacteria


Ether = Archaea

What is the name of the branching of the side chains in the archaic fatty acids within the membrane?

Isoprenoid chains

Why is it said that archaic membranes are monolayers?

The fatty acid tails join and are continuous between the two layers.



What is a fungi membrane made of?

Ergosterol

What is a fungal cell wall made of?

Chitin

What is chitin made of?

Nag repeating units


bonded beta(1,4)glycocidic bond

Imidazoles and triazoles are antifungal drugs which target what?

ergosterol synthesis

Polyenes are antifungal drugs that target what?

ergosterol directly, causing leaks

Why is it very difficult to treat unicellular parasites such as protozoan parasites?

Eukaryotic, so have same external cell features as host.


Drugs that harm parasite will usually also harm host.

What is the term for a round shaped bacteria?

Cocci
What is the term for a elongated oval/oblong shaped bacteria?
rod or bacili
What is the term for a chain of round bacteria?

streptococci

What is the term for a chain of rod shaped bacteria?


streptobacili

What is the term for spiral shaped bacteria?

Spirochete

What is the term for clusters of round shaped bacteria?

Staphylococcus
What is the term for a pair of round bacteria?

Diplococci

What is the term for a pair of rod shaped bacteria?
Diplobacili

What is the term for a chain of rod shaped bacteria, with long ends touching?

Pallisades

What is the term for four round bacteria in a square configuration?

tetrad

What is the term for 8 round bacteria in a cube formation?

sarcina

What is the term for curved bacteria?

Vibrios
What are the different forms of bacterial colonies?

circular, irregular, filamentous and rhizoid
What are the different forms of elevations of bacterial colonies?

raised


convex


flat


umbonate


crateriform

{ Which type of bacterial colony elevation looks like this symbol (with a bobble in the middle)?
umbonate
What are the 5 forms of margins of bacterial colony?


entire


undulate


filiform


curled


lobate


What are 3 other factors of diversity within bacterial populations


luminescence


odd shapes


complex life cycles


Which bacteria has the most complicated life cycle studied?
Gliding Myxobacteria

What is the name for filaments on the surface of bacteria that aid attachment or adhesion to each other or other surfaces?

Fimbriae or common pili

What is the name for filaments on the surface of bacteria that enables horizontal gene transfer

F Pili


What is the name for filaments on the surface of bacteria that enables motility in many bacteria??
Flagellum

What is the name of the type of bacteria that has a single flagellum on one end of the cell?

monotrichous polar

What is the name of the type of bacteria that has many flagella at one end of the cell?

lophotrichous polar


What is the name of the type of bacteria that has one flagellum at either end of the cell?

Amphitrichous polar


What is the name of the type of bacteria that has many flagella all over the surface of the cell?

peritrichous

Flagella are linked to the sensory system to enable bacteria to do what?

Phototaxis and chemotaxis.

What is the name of the structure that enables bacteria to transfer electrons relatively long distances to other cells or an external substrate?

Nanowires
What is the process of creating bacterial endospores?


1. Free endospore germinates into cell


2. Asymetric cell division


3. Septum formation to separate prespore and mother cell


4. Engulfment of prespore by mother cell


5. Cortex of spore forms


6. Coat synthesis


7. Maturation and lysis


What is the cortex of the spore made of?

Layers of peptidoglycan
What does the core of a spore contain and what is the function of these chemicals?


Calcium + Dipicolinic acid


Dehydrates spore


stabilizes DNA

What is the spore coat made of

Spore proteins

What are SASPs
small acid soluble proteins

What is the purpose of SASPs

bind to DNA to protect from UV and heat

Why do some bacteria produce endospores?

To ensure survival of a bacterium through environmental stress
What is filamentation


anomalous growth of bacteria


cell elongation but no division


many chromosomes per cell


response to stresses


What are the 4 types of protozoan morphology

Sporozoa


Flagellates


Amoebae


Ciliates

What differentiates sporozoa from other protozoans?

intracellular
What differentiates flagellates from other protozoans?
movements by flagella
What differentiates amoebae from other protozoans?

Movement through extending pseudopodia


No fixed shape

What differentiates ciliates from other protozoans?
move by beating cilia
Are EuK more closely related to ProK or Archaea?

Archaea
What are similarities between archaea and EuK


-similar cytoskeleton


-membrane remodelling


-ubiquitin modification


-endocytosis + phagocytosis




genes and several metabolic pathways that closely related the EuK


What are the only groups of eukaryotes that have evolved embryogenesis


plantaea


animalia

Roughly how many phyla in EuK

30-40

What are the selective advantages of eukaryotic cells

compartmentalization by internal membranes results in


- raised metabolic concentration


- creation of different environments


- assist with metabolic control


- accommodation of pH and Potential gradients

What is a raise in metabolic concentration beneficial for a eukaryotic cell?


- enzymes work faster


- lower substrate affinities required




Why is the accommodation of a gradient, either potential or pH, within a Eukaryotic cell a benefit?

essential for oxidative phosphorylation - respiration

What is the proof that mitochondria are endosymbionts, evolved from bacteria?


1. ribosome structure


2. circular DNA


3. encoding genes in nucleus from bacterial origin


What is the different between mitochondrial ribosomes, eukaryotic ribosomes and prokaryotic ribosomes?


EuK = 80S (60S and 40S subunits)




ProK + mitochondria = 70S (50S and 30S subunits)


How do mitochondria split within a cell?

Endoplasmic reticulum
How does a zygote only have maternal mtDNA in?


The mitochondria from the sperm is denatured after fertilization.




1. inner membrane disrupted causing a disruption to the inner membrane potential


2. mtDNA exposed and degraded


3. lysosome fuses and clears up debris


Name 2 further endosymbionts, excluding the mitochondria


chloroplasts




hydrogenosome

Is the internal structure of the chloroplast within plant cells identical to it's bacterial counterpart?


no - light harvesting complex 2 is different.





What is a feature of chloroplasts that is characteristic of a prokaryotic feature

lipid bilayer similar to prokaryotic membrane.
What does a hydrogenosome do and where is it found?


produces molecular hydrogen




found in some anaerobic ciliates, trichomonads and fungi.

What is a drug that targets hydrogenosomes?

metronidazole

What are the possible origins of hydrogenosomes?


anaerobic bacteria or archaea




or




mitochondria which have lost mitochondrial features (notably it's genome)


What are the 3 types of protest cell motility


amoeboid


flagellate


cilliate




Name two types of amoeboid protest and the diseases that they cause.


Entamoeba histolytica - amoebic dysentry




Entamoeba gingivalis - gum disease


What is the structure of a flagella in protists?

9 outer pairs of microtubules


central pair called axoneme




tubulin protein




What is the associated protein of flagella in protists? What is it's function


dynein


ATP-ase

What is the structure of bacterial flagella
?
helical array of flagellin

How does the evolutionary history of proctist and bacterial flagella differ?

proctist flagella originates from cytoskeleton




bacterial flagella originates from secretory system

Name the group of flagellate proctists that include the cause for African sleeping sickness.




Name the particular organism in this example.


Kinetoplastids




Trypanosoma bruceii

What kinetoplastids cause kissing bug or Chagas disease?

trypanosome cruzi
What is important biologically about the gut symbionts of termites


trichomonas like


essential for wood digestion




have own symbiont


methanogenic nitrogen fixers


allow to get nutrients from wood


Name a type of protist cilliate
Paramecium

What are ruminants?


Cilliates that are found in stomachs of cows, sheep and deer.




hydrolyse cellulose


What are the rumants equivalents in horses and rabbits?

Caecants

What are apicomplexa


group of parasites




infect cell without entering, but by using special organelle called Rhoptry out of their apical end.




Include the malarias








What is the name of the parasite that only can come from cats.




IgM presence for this disease indicates fetal harm but what other antibody will mean that the fetus is safe.




Why is this?


Toxoplasma gondii




IgM means recent infection


IgG means old infection, and mother's immune system has surpressed it.

toxoplasma gondii can cause what ailment in new borns?

hydroencephalus
What are slime moulds
amoebozoa protists
What are the two types of slime mould


Plasmodial slime mould




cellular slime mould


What is the difference between the two types of slime mould


Plasmodial = many different cells attached to form a supercell. Essentially mass of multi-nucleated cytoplasm




Cellular = most of the time unicellular but assemble into a cluster to act as one large organism upon secretion of cAMP


What characteristic do cells of slime moulds exhibit to ensure that their genetic material becomes part of spore? What genes are involved?


kin descrimination




tgrC1 and tgrB1

According to Herodotus, Foraminifera form the rock of which famous structure today?

Pyramids
What keeps plankton populations in check? Give an example

Viruses - coccolithovirus
What does a coccolithovirus produce to keep the cell that it's infected from dying. This enables to virus to replicate for a prolonged period/


Ceramide


prevents apoptosis


What are diatoms

major group of eukaryotic algae




encased in cell wall called frustules or tests

Why are diatoms called diatoms


frustules have two unsymmetrical parts.



What makes a frustule?


silica




polymerized silicic acid monomers


What makes dynamite?


nitroglycerine and diatomaceous earth

What are dinoflagellates?


2 flagella photosynthetic microorganisms




symbiont of reef building coral





What interesting intracellular structure has been found in dinoflagellates?

lens

What two organisms make up a lichen?

fungi + photosynthetic partner (either cyanobacteria or green algae)

How do lichens feed?


photosynthesis


+ extract minerals from rocks, dust + animal excreta

What compound protects lichens from sunlight and grazing animals?
Usnic acid
What are the 4 types of fungi


yeast


mould


mushrooms


lichens

How do fungi feed?


secrete enzymes


degrade proteins and polysaccharides


reabsorb micronutrients


What can be a replacement for chitin in a fungal cell wall


mannans


galactosans


chitosans

What are small individual structures of fungi called?

hyphae

What are masses of filamentous fungal cells called?

mycelium

What is the fruiting body of a fungi called?

conidia
What are mycorrhizae


fungi


mutualistic association with plant roots


What are the two types of mycorrhizae and how do they differ?


ectomycorrhizae - form sheath around roots




endomycorrhizae - mycelium embedded within root


What are the benefits for each party of a mycorrhizae


root = modified morphology caused by compounds secreted by fungi


allows more efficient nutrient uptake




fungi = carbon from root secretions and inorganic materials from the soil

What is the largest organism on earth

honey fungus = 9km squared.
What are the arguments for viruses being alive or not?


YES - ALIVE


- nucleic acid genetic material


- can replicate






NO


- host cell required for replication


- need to exploit host cells metabolic processes

In comparison to bacteria, roughly how small are viruses

10 x smaller

In terms of numbers of genes, how small is a virus?


can be as small as 5 genes
What are the three main components of a virus


genome - RNA or DNA


protein subunits


envelope ( plasma membrane - not essential)


All viruses (or their nucleocapsids at least) are symmetrical - True or False and explain?


TRUE




helical or icosahedral symmetry

What are the two main shapes of virus? What are their underlying symmetry


Spherical (icosahedral)






Rod (helical)





Give an example of a rod virus

tobacco mosaic virus

Give an example of a spherical virus

human papilloma virus

What is a complex virus, give an example and describe it's structure


more than one structure shape




i.e. bacteriophage T4


icosahedral head


collar


helical tail


end plate


many tail fibres

How are viruses classified? What is the name of the system


according to the nature of their genetic material


double stranded DNA


single stranded DNA


double stranded RNA


single stranded RNA


RNA -> DNA changing




called Baltimore classification


What is the most common virus type

double or single stranded RNA

How is the viral envelope acquired?

as budding from the surface of cells, the lipid bilayer envelopes the virus
Give 2 examples of different enzymes present on the virion of 2 viruses/.


lysozyme on phages - required for entry of genetic material and exit of cell




neuraminidase on influenza - required for release from infected cell

What is a virion

the extracellular form of the virus

What enzymes are always carried by RNA viruses?

replicases

What enzyme in particular is always carried by retroviruses?

reverse transcriptase - change RNA to DNA

What is the one cellular process that ALL viruses need from their host

protein translation on ribosomes.

WHat are the 5 stages of virus replication


1 attachment


2 penetration


3 synthesis


4 assembly


5 release or egress


How do viruses attach to animal cells and how does this allow them to gain entry?


bind to cell surface receptor


signals cell to endocytose or for their membranes to fuse


What about the attachment stage of viral replication promotes target cell specificity?

viruses only bind to specific receptors on cells

What is the penetration stage of viral replication

after the membrane of the virus and cell are fused the RNA contents of the virus are released in to the cytoplasm of the cell.

What is the order of events in the synthesis stage of viral replication


FIRST production of some viral proteins which requires viral mRNA




THEN genome is replication

What is the assembly stage of viral replication


some viral proteins form viral coat, which forms around the nucleic acid.




Virus capsids self assemble


What are the three methods of egress for a virus after it has been replication within a cell


1. budding through membrane (creating an enveloped virus)


2. release following lysis


3. release following cell death

Name three types of subviral entities


1. helper or defective viruses


2. viroids


3. prions


Give an example of a helper or defective virus

phage P4 of E. Coli doesn't encode capsid protein,




requires P2 to also infect cell and provide a capsid.

What is a viroid?


found in plants


cause disease


no protein coat


no protein encoding genes


small circular RNA molecule


stable in+outside of cells due to structure

What is a prion


infectious small protein molecule


no nucleic acid material


cause mad cow disease and CJD

Define pathogen

microorganism capable of causing disease

Define opportunistic pathogen

initiates disease in compromised hosts

Give an example of an opportunistic pathogen

Candida albicans (thrush)

Define primary pathogen

Pathogens that cause disease in healthy individuals

Define Virulence

quantitative term used to indicate the degree of pathogenicity

Define Virulence Factor

Properties of a microorganism that determines it's virulence

What is virulence measured in?

LD50


Median lethal dose


dose required to kill half of a population over a given duration

What is more toxic, a smaller or larger LD

Smaller LD = more toxic



A larger virulence will be associated with a smaller or larger LD

smaller LD

What 4 things must a pathogen do to cause disease?

enter host


metabolise + multiply in tissue


resist defenses


cause damage

What are the key virulence factors of Salmonella

Type 1 fimbriae


Flagellum


Vi Capsule antigen


Cytotoxin


Enterotoxin


Injectosome


Endotoxin


Antiphagocytic proteins

Why is Type 1 fimbriae a virulence factor?

aids in attachment/adhesion

Why is a Flagellum a virulence factor?

aids in adherence


motility


reduction in ability to be phagocytosed

Why is a Vi capsule antigen a virulence factor?

inhibits complement binding

Why is a cytotoxin a virulence factor?

inhibit host cell protein synthesis


can cause calcium influx into host


leads to adherence

Why is enterotoxin a virulence factor?

causes diarrhea

Where does most infection begin in the body?

mucus membranes

Adhesion of a bacteria to host is tissue specific, but not host specific, TRUE OR FALSE.

FALSE




adherence is both tissue and host specific

What are bacterial adhesins?

bacterial subunit proteins


located on fimbriae tip


interact with host receptor for adherence.

What type of receptors do adhesins usually bind to?

glycoproteins or glycolipid receptors

What structure of N Gonorrhoeae plays a key role in attachment to the urogenital tract?

Pili

What types of receptors are in the bladder and kidneys and are targeted in a urogenital infection

specific sugar motifs

What types of pili are usually involved in urogenital tract infections in the kidney and bladder respectively?

Kidney = P Pili


Bladder = type 1 pili

Aside from fimbriae, what is the other main method of attachment for a pathogen and the host.

non-covalent attachement through secreted polysaccharide, proteins or protein carbohydrate mixture.



What are the two types of polymer coats that allow non-covalent attachment of pathogens

slime layers = loose network




capsule coats = well defined layers

Name 7 types of enzymes that are used by pathogens to aid establishment of disease

Hyaluronidase


Collagenase


Lecithenase


Streptokinase


Coagulase


Haemolysins


Leucocidins

What does hyaluronidase do?

- hydrolyses hyaluronic acid (tissue cement)

What does collagenase do?

break down collagen network supporting the tissues

What does lecithenase do?

lyses cells, especially RBC/erythrocytes

What does coagulase do?

promotes fibrin clotting

What does streptokinase do?

fibrinolytic - breaks down fibrin clots

What do haemolysins do?

lyse erythrocytes alpha and beta

What do leucocidins do?

lyse leukocytes

What are the two main families of toxin?

Endotoxin and Exotoxin

Is the following a description of an endotoxin or an exotoxin?




"proteins excreted by gram + or gram - bacterial"

exotoxin

Is the following a description of an endotoxin or an exotoxin?




"Specific mode of action"

Exotoxin

Is the following a description of an endotoxin or an exotoxin?




"toxoid remains immunogenic"

exotoxin

Is the following a description of an endotoxin or an exotoxin?




"Causes general symptoms"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"pyrogenic"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"heat labile"

exotoxin

Is the following a description of an endotoxin or an exotoxin?



"binds to cell receptors"

exotoxin

Is the following a description of an endotoxin or an exotoxin?




"Relatively poor immunogen"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"treatment with formaldehyde destroys toxicity but leaves toxoid"

exotoxin

Is the following a description of an endotoxin or an exotoxin?




"Neurotoxins and enterotoxins belong to this family"

exotoxin

Is the following a description of an endotoxin or an exotoxin?




"stimulates the production of antitoxins (neutralising antibodies)"

exotoxin

Is the following a description of an endotoxin or an exotoxin?




"lipopolysaccharide complexes"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"produced by the lysing of the bacteria"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"from gram negative bacteria"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"extremely heat stable"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"Fever, diarrhoea and vomiting are key symptoms"

endotoxin

Is the following a description of an endotoxin or an exotoxin?




"Immune response generated not sufficient to neutralise toxin"

endotoxin

What are the 3 categories of exotoxin?

Cytolytic


AB toxins


Superantigens

What are cytolytic exotoxins

use enzymes to attack host cell constituents

What are AB exotoxins

A and B are two covalently attached subunit proteins




B binds to surface receptor




A then allowed transfer into cell to cause damage

What are superantigens

stimulate extremely large immune response


- excessive inflammatory reaction

Give 3 examples of AB toxins?

Diptheria


Botulinum


Tetanus

Give an example of a cytotoxin

Cholera

What bacteria produces diptheria

corynebacterium diptheriae

What bacteria produces botulinum

clostidium botulinum

what bacteria produces tetanus

clostidium tetani

What bacteria produces cholera

vibrio cholera

Which enzyme does cholera use for host cell damage

pneumolysin

How does diptheria cause illness?

B subunit of diptheria toxin binds to cell receptor


A subunit cleaved and internalised




A catalyses ADP-ribosylation of EF-2 (elongation factor 2)




Modified EF-2 cannot aid transfer of amino acids to growing peptide




Protein synthesis halts

How does botulinum toxin cause illness

Prevents acetylcholine leaving synapse at motor end plate




Muscles cannot be innervated for contraction




Flaccid paralysis

What is the LD50 of Botox in mice. What is the implication of this?

25 pictograms




Very tiny amount (25 millionths of a gram)


Very large toxicity

How does tetanus toxin cause illness?

Tetanus toxin blocks glycine from inhibitory interneurone




Glycine can not prevent the release of acetylcholine from motor end plate




Muscles constantly stimulated to contract




Paralysis + asphyxiation

How does cholera cause illness

Internalised A subunit activates adenylate cyclase




disrupts natural sodium ion influx




causes mass loss of water from blood into lumen of small intestine




cause excessive diarrhoea

How can endotoxins lead to death?

haemorrhagic shock




induced by large inflammatory response



What is the test required to confirm that any gram negative based product does not contain endotoxins?

LAL assay




Limulus amebocyte lysate




can detect as little as 10 pg/ml or more

What is pneumolysin and what does it cause?

virulence factor for gram + streptococcus pneumoniae




pore forming toxin




lyse cells


interfer with cell function


interfer with soluble part of immune system