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What are microrganisms?

organisms that are too small to be seen with the unaided eye

1 cm = ? mm

10 mm

E. coli , Salmonella



are examples of?

Bacteria

What are the beneficial uses of microbes in our lives?

- Decomposes organic waste



- Are producers in the ecosystem by photosynthesis



- Produce industrial chemicals (ethanol , acetone)



- Produce fermented foods (vinegar, cheese and bread)



- Produce products used to treat disease ( insulin)

Knowledge of microrganisms has allowed humans to?

- Prevent food spoilage



- Prevent disease occurence


Microorganisms have lead us to what technique?

- Aseptic techniques , to prevent contamination in medicine and in microbiology labs

Who first established the system of scientific nomenclature in 1735?

Linnaeus

What are the two names of the organisms?

Each organism has two names:



1) the genus



2) specific epithet (species)

What are the rules for scientific names?

- they should be italicized or underlined



- genus is capitalized



- the specific epithet is lowercase




* example:



Scaptia beyonceae (underlined or italicized)

What is Escherichia coli (E. coli) ?

- Honors the discoverer Theodor Escherich



- Describes the bacterium's habitat ( large intestine or colon)

What is Staphylococcus aureus (S. Aureus) ?

- Describes the clustered (staphylo)



- cocci = spherical



- aureus = gold colored colonies



- found on skin

Types of Microrganisms

1. Bacteria



2. Archaea



3. Fungi



4. Protozoa



5. Algae



6. Viruses



7. Multicellular animal parasites

Bacteria's charcteristics

- Prokaryotes (lack nucleus)



- Peptidoglycan cell walls



- Binary fission



- For energy , use organic chemicals , inorganic chemicals or photosyntheis

Archaea's charcteristics

- prokaryotic



- lack peptidoglycan



- live in extreme enviornments



- include: methanogens , extreme halophiles, and extreme thermophiles

note: examples include yosemite

Fungi's charcteristics

- Eukaryotes



- Chitin cell walls



- use organic chemicals for energy



- molds & mushrooms are multicellular



- yeasts are unicellular

protozoa's characteristics

- Eukaryotes



- absorb or ingest organic chemicals



- may be motile via pseudopods, cilia , flagella

Algae's characteritiscs

- Eukaryotes



- cellulose cell walls



- use photosynthesis for energy



- produce molecular oxygen and organic compounds

* major contributor to oxygen

Virus characteristic

- Acellular



- consist of DNA or RNA core



- core is surrounded by a protein coat (used to infect cells)



- viruses are replicated only when they are in a living host cell

Multicellular Animal Parasites

- Eukaryotes



- Multicellular animals



- Parasitic flatworms and round worms are helminths



- microscopic stages in life cycles

* example is found in dog's heart

Three domains , what is system based on?

1. Bacteria


2. Archaea


3. Eukarya


- Protists


- Fungi


- Plants


-Animals



* system is based on the type of cell

Anton Van Leeuwenhoek

1673-1723



- described live microorganisms

Robert Hooke

1665



- reported that living things were composed of little boxes or cells

Rudolf Virchow

1858



- said cells arise from preexisting cells (cell theory)

Cell theory

all living things are composed of cells and come from pre-existing cells

Spontaneous Generation

the hypothesis that living organisms arise from nonliving matter, a "vital force" forms life

Biogenesis

The hypothesis that the living organisms arise from preexisting life ( true)

1668: Francesco Redi filled 6 jars with decaying meat



3 jars covered with fine net = no maggots



3 open jars = maggots appeared



from where did the maggots come?



what was the purpose of the sealed jars?



spontaneous or biogenesis?

- Maggots came from the outside , flys laying eggs



- sealed jars were to protect from bacteria



- biogenesis ( keep the flies out)

1745: John Needham put boiled nutrient broth into covered flasks



- nutrient broth heated then placed in a sealed flask = microbial growth



from where did the microbes come from?



spontaneous generation or biogenesis?

- microbes came from air outside the enviornment



- used to prove spontaneous generation

1765: Lazzaro Spallanzani boiled nutrient solutions in flasks



nutrient broth placed in flask , heated, then sealed = no microbial growth



spontaneous generation or biogenesis?

- biogenesis b/c closed to outside enviornment , if sealed nothing can grow

1861: Louis Pasteur demonstrated that microorganisms are present in the air



nutrient broth placed in flask , heated , not sealed = microbial growth



nutrient broth placed in flask , heated, then sealed = no microbial growth




spontaneous generation or biogenesis?

Biogenesis

Louis Pasteur accomplishments

- 1857- 1914



- Used s-shaped flask to prove biogenesis , ( was used to keep microbes out but let air in)



- with his work discoveries included the relationship between microbes & disease , immunity , & antimicrobial drugs



- he showed that microbes are responsible for fermentation



- came up with pasteurization (application of high heat to kill bacteria)



- also demonstrated microbial growth is also responsible for spoilage of food

What is fermentation?

is the conversion of sugar to alcohol to make beer & wine

What is Pasteurization?

is the application of a high heat for a short time

ex) milk



- doesn't destroy milk proteins but just bacteria

Who is part of the Germ Theory?

- Louis Pasteur



- Joseph Lister (1860's)



- Robert Koch (1876)



What is the Germ Theory?

Microrganisms can cause disease!

Joseph Lister's accomplishments

- to continue proving pasteur's work, he used a chemical disinfectant to prevent surgical wound infection

Robert Koch's accomplishments

- proved that a bacterium causes anthrax



- provided the experimental steps , Koch's postulates to prove that a specific microbe causes specific disease

Who discovered vaccines and how?

- In 1796 , Edward Jenner



- he innoculated a person with cowpox virus , who was then protected by smallpox



- the protection is called immunity

* used unethical procedures



*cow pox protected others from small pox

How do vaccines work?

- When a person receives a vaccine , the body reacts by making antibodies



- The antibodies are the body's defenders because they kill off the germs that enter the body



= vaccines expose people safely to germs

* vaccine contains a killed or weakened part of a germ that is responsible for infection

What are Antibiotics?

Are chemicals produced by bacteria and fungi that inhibit or kill other microbes

Who discovered the 1st antibiotic?



And how?

- Alexander Fleming (1928)



- Fleming observed that Penicillium fungus made an antibiotic



- he discovered that penicillin killed S. aureus



- 1940's Penicillin was tested clinically and mass produced

5 Branches of Microbiology

1. Mycology (study of fungi)



2. Parasitology (study of protozoa & parasitic worms)



3. Immunology ( study of immunity , i.e. vaccines & interferons)



4. Virology (study of viruses)



5. Bacteriology (study of bacteria)

How was immunology used?

- vaccines and interferons are being investigated to prevent and cure viral diseases



- the use of immunology to identify some bacteria according to serotypes was proposed by Rebecca Lancefield in 1933

Microbial Genetics

the study of how microbes inherit traits

Molecular Biology

The study of how DNA directs protein synthesis

Genomics

The study of an organism's genes , has provided new tools for classifying microorganisms

Recombinant DNA

DNA made from two different sources



- in 1960's Paul Berg inserted animal DNA into bacterial DNA and the bacteria produced an animal protein

Microrganisms recycle what?

- Carbon



- Nutrients



- Sulfur



- Phosphrous



= that can be used by plants and animals

Give an example of microorganisms recycling?

- mycorrhiza ( fungus found on almost all plant roots) convert phosphrous and minerals in soil for plant to use "friendly fungi"

Bioremediation

- bacteria degrade organic matter in sewage



- Bacteria degrade or detoxify pollutants such as oil and mercury

Biotechnology

is the use of microbes to produce foods and chemicals

Recombinant DNA technology

a new technique for biotechnology enables bacteria and fungi to produce a variety of proteins including vaccines and enzymes

Missing or defective genes in human cells can be replaced in?

Gene therapy

Genetically modified bacteria are used to?

to protect crops from insects and from freezing

4 important terms in microbes and human disease

1. Normal Microbiota



2. Biofilms



3. Infectious Diseases



4. Emerging Infectious Diseases

What is Normal Microbiota?

- microbes normally present in and on human body



- prevent growth of pathogens



- produce useful substances such as vitamins

What is resistance?

- normal microbiota



- is the ability of the body to ward off disease



- resistance factors include skin , stomach acid , and antimicrobial chemicals

Biofilms

- microbes attach to solid surfaces and grow into masses



- they will grow on rocks, pipes, teeth, and medical implants

Infectious Diseases

when pathogen overcomes a host's resistance , disease results

Emerging Infectious Diseases (EIDS)

- new diseases and diseases increasing in incidence



ex) H1N1 influenza and H5N1 or bird flu

Name types of diseases

1. MRSA



2. West Nile Encephalitis



3. Bovine Spongiform Encephalopathy



4. E coli



5. Ebola Hemorrhagic Fever



6. AIDS



7. H1N1 influenza



8. H5N1 (bird flu)

What is MRSA?

-Methicillin - resistant Staphyloccocus aureus



- acquired in hospital settings

* 1990's MRSA resistance to vancomycin reported



* vancomycin- intermediate-resistant S. aureus

West Nile Encephalitis

- caused by West Nile virus



- first diagnosed in the West Nile region of Uganda



- appeared in NYC

*663 cases



*18 dead



* 41 deaths nationwide

Bovine Spongiform Encephalopathy

- caused by prion



- also causes Creutzfeldt-Jakob (CJD)



- new variant CJD in humans is related to cattle fed sheep offal for protein

Escherichia Colo O157:H7

- Toxin- producing strain of E.coli



- First seen 1982



- leading cause of diarrhea worldwide

Ebola Hemorrhagic Fever

- Ebola virus



- causes fever , hemorrhaging, and blood clotting



- first identified near Ebola River, Congo



- outbreaks every few yeard

Acquired Immunodeficiency Syndrome

- caused by human immunodeficiency virus ( HIV)




- 1st identified in 1981



- Worldwide epidemic infecting 30 million people , 14 thousand new infections everyday



- sexually transmitted infection affecting males and females



- no cure or vaccines , just anti-retoviral , slows diease progression