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39 Cards in this Set

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Taxonomy

the science of classification, especially classification of living forms




-provides a common reference for identifying organisms already classified

Traits of all Organisms

1. composed of cells surrounded by a plasma membrane




2. use ATP for energy




3. store their genetic information in DNA




4. result of evolution from a common ancestor

Taxa

Categories

Discuss the limitations of a 2 kingdom classification system

Plantae and Animalia

- advances in molecular biology and DNA sequencing showed that fungi are closer related to animals than plants




-two kingdom system NOT based on natural classification based on ancestral relationships

Discuss the advantages of the Three Domain Classification System




Archaea, Bacteria, and Eukarya

- classified by cell type, cell wall, rRNA, membrane lipid structure, tRNA, sensitivity to antibiotics

Why are scientific names used?

In order for biologists to be sure they are talking about the same organism. Common names on the other hand are used for different organisms from different places in different languages. Common names are usually misleading.

Binomials (Genus Species) used by scientists worldwide which enables them to share knowledge efficiently and accurately

Ie. Spanish moss named after 2 organisms, neither is actually a moss.

Binomial Nomenclature

Genus(noun) + species(adjective) (Italicized or Underlined)

Eukaryotic Species

group of closely related organisms that breed among themselves




- members of a species make up agents

Prokaryotic Species

bacteria/archaea




a population of cells with similar characteristics, since sexual conjugation is rare

Viral Species

population of viruses with similar characteristics occupying a particular ecological niche.

(characteristics include morphology, genes, and enzymes)

Viruses

1. not in a Kingdom


2. not composed of cells


3. cannot grow outside of host cell

Culture

bacteria grown in a media

Clone

population of cells derived from a single parent cell, all clones should be identical but in same cases aren't

Strain

genetically different cells within a clone




- group within a species usually defined by physiological traits

Protist (unicellular!)

unicellular eukaryotes and their close relatives, catch hall for eukayotic organisms that do not fit other kingdoms or being currently assigned to kingdoms

Purpose of Bergey's Manual

used as a reference to identify bacteria based on 1. cell wall composition


2. morphology


3. differential staining


4. oxygen requirement


5. biochemical testing

Rapid Identification Method or Numerical Identification

- manufactured for groups of medically important bacteria




- designed to identify bacteria within 4 to 24 hours




Numerical Identification - since results are assigned a number

Cell

the fundamental unit of all life and carries out all basic functions of living things (cell theory)

Cell Types

Karyo = nuclues




Pro = Before




Eu = True

Prokaryotic Cells = bacteria and archaea

- lack internal membrane-bound organelles, much more simple




- are the smallest "true cells" and are always unicellular




From Inside to Outside


Cell membrane --> Cell Wall --> Capsule

Nutrition

means by which an organism obtains:




1. matter (for growth and repair)




2. energy (which drives life's processes)



Sources of Matter

1. Organic: molecule containing both Carbon and Hydrogen




2. Inorganic: molecule not containing both C and H

Energy

may obtained from light or chemical sources

Autotrophism

not requiring organic food, being able to live on just inorganic molecules plus some energy sources

ie. photosynthetic autotrophism - all green plants and algae, some bacteria




inorganicss + energy

Heterotrophism

'feeders on others' needing organic carbon source




ie. chemosynthetic heterotrophism (chemoheterotrophs)


--> most animals, almost all medically important microbes

Parasitism

gradually drawing food from a living host organism




(all viruses, many bacteria, fungi, protozoa, and a few animals)

Saprophytism or Saprotrophism

digesting dead organisms or organic matter (=decay)




--> many bacteria and fungi, many Saprophytes may parasitize hosts with poor body defenses (mushroom=common saphrophyte)

Archaea

prokaryotic; bacteria-like (many diff including no peptidoglycan in cell walls), live in extreme habitats

Bacteria

true bacteria (cell walls contain peptidoglycan)

Eukarya

all eukaryotic organisms

Genus

a group of closely related species




ie. Clostridium tetani, Clostridium botulinum, Clostridium perfringens




- members of a genus will be the same in most respects; different in a few specific ways




- placements sometimes change due to new laboratory techniques

sp.

refers to species in singular. Often used to refer to an unknown species of a known genus




ie. Mycobacterium sp.

spp.

refers to species in plural. Often used to refer all members of a genus.




ie. Mycobacterium spp.

Subspecies

a group within a species, usually defined by visible traits; different subspecies usually live in different areas

Virus Naming

- neither prokaryotic nor eukaryotic


- not considered true cells, non living.




- first DNA sequencing groups them into families based on genomics and structure

Bacteria

- microscopic in size: 0.2 - 2.0 um in diameter and 2-8 um in length.

Bacteriology

the study of bacteria

Bacterial colonies

clusters of millions of bacteria on a solid surface

Pleomorphic

cells have many shapes, not just one!




ie. Corynebacterium diphtheriae