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31 Cards in this Set

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Semiconservative replication

2 DNA strands unzip, each a template for complementary nucleotides to form new strands -> 2 identical chromosomes

Topoisomerase

A replication enzyme that relaxes DNA supercoiling

Replication enzyme

Helicase

A replication enzyme which disrupts hydrogen bonds between bases -> unzips DNA

Replication enzyme

DNA primase

A replication enzyme that forms short RNA primer -> initiates binding of DNA polymerase to parent strands

Replication enzyme

DNA polymerase

Dimeric structure (2 copies) each binds a parent strand, travels towards 5' end of each parent strand -> nucleotides added to 3' end of daughter strands


-parent strands antiparallel -> linked polymerases want to go in opposite directions

Antiparallel

Leading strand

DNA strand which is synthesized continuously

DNA replication

Lagging strand

The strand synthesized in Okazaki fragments, 200-2k base pairs separated by 50 bp gaps

DNA Replication

Ligase

Replication enzyme that fills 50 bp gap between Okazaki fragments -> another DNA polymerase replaces RNA primer with DNA nucleotides

Telomeres

Numerous at ends of eukaryotic chromosomes


One lost from ends of chromosome with each replication (terminal RNA primer shops new strand from teaching last nucleotides)


When last telomere is lost, more replication causes chromosome damage (aging)

Prevents damage to coding regions

Centromere

Area of a eukaryotic chromosome with repeating base



The gal sister chromatids remain connected at the centromere until disjunction in meiosis or mitosis

Okazaki Fragments

Associated with lagging strand of DNA replication


Much short in eukaryotes because of differences in polymerases

Transcription


(What are its steps?)

DNA to RNA


Has 3 steps: initiation, elongation and termination

Translation

RNA to amino acid sequence of proteins

Operon

Adjacent genes expressed together

Transcription

Initiation

Transcription factors bind to the promoter site (TATA box) at start of gene -- both eukaryotes and prokaryotes



Eukaryotes only: RNA polymerase then binds to a protein initiation factor to be activated

Transcription

Initiation

Transcription factors bind to the promoter site (TATA box) at start of gene -- both eukaryotes and prokaryotes



Eukaryotes only: RNA polymerase then binds to a protein initiation factor to be activated

Transcription

TATA Box

The promoter site at the start of a gene that transcription factors bind to during initiation


both eukaryotes and prokaryotes have this

Transcription

Elongation

Helicase unwinds gene from nucleosome (histones) and unzips -- both eukaryotes and prokaryotes


In eukaryotes only, RNA polymerase disrupts hydrogen bonds between base pairs >> travels down coding strand towards 5' end >> ribonucleotides added to 3' 4!: of growing mRNA transcript complementary to DNA template

Transcription

Termination

-Eukaryotic step ONLY


RNA polymerase reaches terminator A-poly sequence


-Releases primary mRNA transcript

Symporter

Secondary active transport that couples the energy of a molecule going down its gradient to move another against it (both in same direction)


E.g., the sodium/glucose transporter which couples the transport of the two molecules to move glucose against its concentration gradient

Nephrons take advantage of Na gradient to transport glucose



Transport across a cell membrane

Antiporter

Secondary active transport where a molecule uses its gradient to move another molecule (moving in different directions)



Sodium goes down concentration gradient and glucose is going against it

Amphipathic

Both hydrophobic and hydrophilic environments

Fenestrations

Small windows, as seen in nephrons which allow for the easy passage of small molecules over the membrane

Phagocytosis

Captures foreign pathogens and releases noxious substances inside vesicles to neutralize the invaders

Leak Channel

Passive transport (requiring no energy) of certain ions, like K+, across cell membrane

Primary active transport

Uses energy/ATP directly

Secondary active transport

Uses gradient set up using energy

Intercalated disks

Permits the passage of ions between cells, allowing an action potential to spread very rapidly to produce a coordinated contraction in muscle cells

Cardiac muscle cells

Receptor tyrosine kinases

Integral membrane proteins that relay a "message" from the extracellular side of the cell to the intercellular side of the cell. Upon activation, RTKs dime rise and phosphorylase tyrosine residues on each other's tails.

Enzyme-linked receptors

Codon

-"Words" in DNA/RNA "language"


-translated into amino acids, the protein language


-3 nucleotides long, there are 64 possible codons

The genetic code

Start codon

-TAC: DNA template strand


-AUG: mRNA transcript

The genetic code