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7 Cards in this Set

  • Front
  • Back

Precursor ions

The ions with intact mass of the analyte

Fragment ions

Ions generated from fragmentation of the precursor ions.

Ion suppression

Suppression of ionisation of low abundance analytes by high abundance analytes in the ion source. Seen in soft ionisation techniques.

Metabolomics

Metabolite extraction


Key: rapid enzyme sequencing



Chromatography


Key: separation


GC: volatility


HILIC: Polarity


RP: Hydrophobicity



Mass Spectrometry


Key: sensitivity


Specificity


TOF, Orbitrap: mass resolution


Triple quad: fragmentation



Data analysis


Key: metabolite identification


Challenges


Metabolite misidentification: fragments mimicking real metabolites


Identifying unknowns:


Need MS/MS or NMR

Masses in mass spectrometry

Avg mass


Exact mass


Mono isotopic mass


Accurate mass

Basic steps in metabolomics

Quenching: to stop enzyme activity and interconversion between metabolites.


Extraction: extraction of metabolites into solvent.


Analysis: Mass spectrometry, NMR, Enzyme assays

Sangers reagent

Fluorodinitrobenzene FDNM