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143 Cards in this Set

  • Front
  • Back
What is heridatary material?
Chromosomes
What shape do chromosomes have?
Rod shaped thread like structures
What are chromosomes made up of?
Made up of DNA, Histones & other proteins (together
constitute Chromatin)
How many chromosomes are there? How many pairs?
46 chrom= 23 pairs
What is chromatin m/u of?
omatin m/u of mainly DNA but also histones(+chg) they also regulate flow of genetic information. Genetic info is req for synthesise in blood
What are constiture genes?
Are expressed at certain times (like a job work only 8-5)
What are inducable genes?
Are expressed when there is a need
Chromosomes exhibit a definite pattern of...
Chromosomes exhibit a definite pattern of
Morphology and number in individual organism
In a karyotype what phase is suspended & what is displayed?
The number, size and shapes of Metaphase
Chromosomes constitute- KARYOTYPE-cytogenetics
How many chromatids are made in metaphase? what holds them together?
Each metaphase chromosome is made up of
two chromatids. Held together by an area of
primary constriction called centromere.
What color stain does centromere reveal?
Centromere is a pale staining region.
Centromere connects what? What is it rich in? What is a kinetochore?
Centromere, which connects two sister chromatids in dividing cells, is an A – T rich region. It binds several proteins with high affinity. The complex of A-T rich region of DNA and proteins in centromere is called as Kinetochore.
Why is kinetochore important?
Kinetochore is an essential structure for chromosomal segregation during cell division.
What is a telomere? What is telomerase rich in?
The structural region at the ends of each chromosome. Made of TG rich repeat sequences(eg.5’-TTTGGG- 3’). Telomerase protein is important in maintaining telomere.
What is the purpose of histones?
Histones regulate flow/expression of genetic information
What letter signifies short arm & long arm?
Short=p
Long arm=q
Which chromosomes signify sex?
Chromosome pair 23
What cells are diploid cells? How many sets of chromosomes do they contain.
All somatic cells are diploid cells. They contain two sets of chromosomes. Gametes(sperm & ovum) are haploid cells.
What are an example of haploid cell? How many chromosome sets do they have?
Gametes(sperm & ovum) are haploid cells. They have one set of chromosomes (half the number of diploid cells) .
What determines position of centromere? What are the types?
Based on the position of centromere, the chromosomes are classified into:

1. Metacentric – in the middle
2. Sub metacentric – on either side of the mid point
3. Acrocentric – Near the end
4. Telocentric - At the extreme tip.
What are autosomes?
Majority of the chromosomes present in the nucleus are autosomes. In humans there are 22 pairs (44) of autosomes in diploid cells & 22 in haploid cells.
What are sex chromosomes also called? What is homogametic & heterogametic?
They are also called
as allosomes. In humans there is a single
pair of sex chromosomes. In females both the sex chromosomes are alike (XX). This phenomenon is called as homogametic. On the other hand in males the two sex chromosomes are not identical (XY). This pattern is heterogametic .
What are the numerical changes in chromosomes?
Based on number of sets;
i) Haploid: Single set
ii) Dipliod: Two sets
iii) Polypliod: More than two sets.
What is the Approximate number of protein coding genes present in haploid human genome?
Approximate number of protein coding genes present in haploid human genome: 25000
How is proteins coded?
mRNA
What is alternatice splicing?
Alternative splicing of precursor mRNA is mainly responsible for the formation of multiple proteins from a single gene
What is the central dogma?
DNA--Tc--RNA--Tl---Protein
What is transcription?
It is the process by which RNA is synthesized from DNA
What occurs in ea. Tc process?
i) Only a portion of DNA takes part and that portion may be called as gene
ii) Of the 2 strands of DNA(gene) only one strand takes part in the synthesis of new RNA. It is called as template strand. The opposite strand is called as coding strand
What enzyme is important in Tc? What is promoter seq.? What directin is new RNA synthesized?
RNA polymerase is the enzyme responsible for the process of transcription

Each gene contains a promoter sequence meant for initiation

The new RNA strand is synthesized in 5’ to 3’ direction
What is the newly synthesized RNA strand called? What is it complementary to?
The newly synthesized RNA strand is called as primary RNA transcript

The primary RNA transcript is complimentary to the template strand of the DNA (gene), except U (uracil) is present in place of T (thymine) and ribose is the sugar in place of deoxyribose
5 ---A-C-T-G-C-G-T-A-A-A-G-T-C-A-G-T----3
3 ---T-G-A-C-G-C-A-T-T- T-C-A-G-T-C-A----5
5---A-C-U-G-C-G-U-A-A-A-G-U-C-A-G-U---3
What are the Post Transcriptional Modifications of precursor mRNA to form functional mRNA ?*** very important
Important events are;
i) Addition of 7 methyl Guanine cap at 5’ end
ii) Addition of poly A tail at 3’end
iii) Splicing- ie. Removal of non coding intron regions and joining of coding exon regions. This is accomplished by spliceosome complex made up of small nuclear ribonucleoprotein
A gene coding for the proteins of potassium channel is transcribed to form pre.mRNA with __ exons, __of them are subjected to alternative splicing thereby capable of giving rise to over 500 different proteins
A gene coding for the proteins of potassium channel is transcribed to form pre.mRNA with 35 exons, 8 of them are subjected to alternative splicing thereby capable of giving rise to over 500 different proteins
What percentage of diseases is affected by alternative splicing? Ex?
15% of genetic diseases are due to mutation in splice sites. Best example is Beta thalassemia
What do the introns start with and end with?
Normally all the introns start with GU (5’ ) and end with AG (3’)
How many codons can be created how many bases? How many amino acids?
Considering 4 bases in mRNA 64 codons can be created. Among them 61 code for 20 different amino acids. Remaining 3 are called as stop codons or non sense codons
What is translation? Where does it take place?
It is the process by which the genetic information present in mRNA as codons are translated to form amino acid sequence of protein
Translation takes place in ribosomes of the cell
What occurs during translation?
During translation;
i) mRNA serves the genetic information for the formation of amino acid sequence of protein

ii) tRNA acts as career of amino acids to the site of protein synthesis

iii) rRNA serves as the integral part of ribosomes, and thereby coordinating the process of translation
What does translation process involve?
Activation of amino acids to form amino acyl tRNA
What are the types of post translational modificatins?
Cleavage , glycosylation , phosphorylation, hydrxylation, incorporation of prosthetic groups, metals etc
Where can the expression of genetic information could also be controlled at the level of
i) Post transcriptional processing of precursor mRNA
ii) Translation
What are pseudogenes? How many types, what?
Pseudogenes are non functional genes present widespread througout the genome

Their nucleotide sequences resemble that of known genes and gene families

They are of 2 types;
Non processed
Processed
What are non processed psuedogenes?
They are dead genes, but functional once upon a time, and formed as byproducts during evolution
What are processed pseudogenes?
They are integrated into the human genome as a result of the process called as Retrotransposition

These genes are created from mRNA as a result of reverse transcription and get inserted into the human genome

In Olfactory receptor (OR) gene family there are over 600 pseudogenes
What is a gene?
Fundamental unit of genetic expression for a feature (Character).
What is a locus?
Specific location (site) in chromosome
for a gene.
What is an allele?
Alternative forms of genes for
specific character, present at the same locus in homologous chromosome.
They are units that determine the heritable characters.
What chromosome is responsible for eye color?
Chromosome 15
What is homozygous?
If the two alleles, for a particular character, are identical
What is heterozygous?
If the two alleles, for a particular character, are not identical
What is dominant?
In heterozygous condition, the allele which is responsible for the expression of a character

Denoted by Capital letter
What is recessive?
The allele, which does not express its character in heterozygous condition

Denoted by small letter
What is autosomal?
Refers to the expression of allele (gene) in autosomes. Autosomal inheritance is the inheritance of characters through the alleles present in autosomes.
What is X-Linked?
Refers to the expression or inheritance of characters through X chromosomes.
What is phenotype?
Outward appearance & Physical
characteristics
Examples:
Brown eye color
Curly hair
Hb A
Hb S
What is genotype?
Genetic set up (pattern of alleles) in
either autosomes or sex chromosomes for
a particular character.
Example :
Brown eye color
BB = Brown (homozygous dominant)
Blue eye color
bb = Blue (homozygous recessive)
Brown eye color
Bb = Brown (heterozygous)
What is Single Gene inheritance? What law does it follow?
In general Single gene inheritance represents the
Inheritance pattern of a pair of genes(alleles) present in
a pair of Homologous chromosomes from parents to
offspring

follows Mendel’s
First Law (Law of Segregation)
The basic aspects of the Mendelian principle for single gene inheritance are:
Existence of two genes (Alleles) for a single character (trait)

The two alleles may be identical (homozygous) or different (heterozygous).

If heterozygous, the dominant allele is responsible for phenotypic expression
Single Gene inheritance:
EExee (E=free, e=attached)
Genotype gametes?
Genotype & Phenotype of Offspring?
EE X ee
(Homozygous Free)(Homozygous attached)

Genotype of gametes: E & e

Genotype and Phenotype of Offspring:
Ee (Heterozygous Free)
EexEe

Geno & Pheno of parents?
Geno of gametes?
G & O of offspring?
G&P Parents:
Ee (Hetero Free) x Ee (Hetero free)

Geno of gametes: E or e & E or e

G&P of offspring:
EE (homo free), Ee (hetero free), ee (homo attach)
EexEe

What is the geno & pheno ratio? What are the possible pheno & geno?
1:2:1 genotype
3:1 phenotype

1/4 = EE – Free ear lobe
1/2 = Ee - Free ear lobe
1/4 = ee - Attached ear lobe
What are the examples of non mendalian Inheritance patterns?
Incomplete Dominance
Codominance
What is Incomplete Dominance?
Inheritance of hair pattern; curly or straight
What would be the pheno & geno of the gametes if the parent genotypes were CC(curly) x cc(straight)
Cc heterozygous wavy hair
What are the gametes of CcxCc?
CC; Cc; Cc; cc

Genotype: Cc, Cc, cc 1:2:1
Phenotype: Curly, Wavy, Straight 1:2:1
What is codominance?
Both alleles participate in phenotype expression

Ex. ABO blood group system
What is ABO blood group system also an example of? How is it determined?
Multiple Allele pattern

ABO blood groups are genetically determined by a locus on Chromosome 9
The three alleles ABO determine how many phenotypes? Which are dominant?
4 phenotypes

Dominant: A & B
Recessive: O
What are the possible gametes if the parent is IbIb x Iai
IaIb = 1/2
Ibi= 1/2
What are the possible gametes if the parent is IaIb x ii
Iai = 1/2
Ibi = 1/2
What is Proband/ Propositus/ Index case?
Refers to the member of the affected family, who first reports the case to Genetic consultant or Clinician.
What are the relatives based on degree:
First Degree: Parents, sibs and offspring of the proband

Second Degree: Grandparents, Uncles,
Aunts, Grandchildren, Nephews and Nieces.

Third Degree: Example; First cousins.
What is consanguity, isolate, sporadic?
Consanguinity/Consanguineous: Couples having one or more ancestors in common

Isolated: If there is only one affected member in a family.

Sporadic: If the disorder is due to new mutation in proband.
What are the classifications of genetic disorder?
Single Gene Disorders

Chromosomal Disorders

Multifactorial Disorders
What is single gene disorder? How is it caused? What are the types?
Single gene disorders in general follow Mendelian inheritance pattern.

Caused by mutation of one or both the genes in a pair.

There are four different types:

Autosomal Dominant
Autosomal Recessive
X – Linked Dominant
X – Linked Recessive
Where is new mutation more evident? How is it likely called?
Autosomal dominant diseases

Most likely a gene transmitted by one of the parents undergoes mutation.
What disease is an example of new mutation? Why?
Achondroplasia b/c disease limits the potential for reproduction
What is germline mosaicism? What are the details? How could it be caused?
Mosaicism is the presence of more than one genetically distinct cell line in the body.

Apart from new mutation, occasionally individuals may exhibit autosomal dominant or X-linked diseases with no previous family history. This could be due to Germline mosaicism.

Could be caused by mutation in germ line cell w/o affecting somatic cells.

Can persist in all clonal descendants
What disorder is usually found in germline mosaicism? What type of disorder is it?
Osteogenesis imperfecta, where mutation in type I collagen gene leads to the formation of abnormal collagen --- brittle bones and frequent fractures.
also in Duchenne Muscular Dys, Hemophilia A, rarely Achondroplasia

Autosomal dominant disorder
What is reduced penetrance? What disease is it found and what type of dominance?
It is the pattern where abnormal phenotypic expression is not observed at all.
Retinoblastoma, a malignant eye tumor (Autosomal dominant) is a good example for reduced penetrance. Here 10% of the obligatory carriers do not have phenotypic expression. So the penetrance is 90% .
What is Age dependent penetrance? What disease is common?
A delay in the age of onset of a genetic disease is called as Age-Dependent Penetrance.

Hutington
What is variable expression?
Severity of the phenotypic expression, sometimes the penetrance may be complete but the severity varies. even if ppl have the same genotype.
What is penetrance? How is it different from variable expression?
Penetrance is all or none phenomenon.

Variable expression refers to severity of phenotypic expression
What is pleiotropy? ex?
When a single abnormal gene or gene pair produces diverse phenotypic effects, involving different organ systems and clinical symptoms, its expression is said to be pleiotropic. ie. the genes have more than one discernible effect on the body.

Marfaran syndrome, autosomal dominant
What is heterogeneity?
This is in contrast to Pleiotropy. Here similar types of phenotypic expression (abnormal manifestations) are exhibited different mutation
What is allelic heterogeneity? ex?
Different types of mutation in alleles located in same locus–
eg. Cystic Fibrosis

Caused by different types of mutation in CFTR gene
What is locus heterogeniety? ex?
Mutation of alleles present at different loci, may be at different chromosomes
eg. Retinitis Pigmentosa –visual impairment, could be autosomal dominant, autosomal recessive or X-linked
If a trait generally appears in every generation what inheritance is it?
auto dominant
Each pregnancy is an "independent event" so even after an affected child, the chance to produce another affected child in the subsequent pregnancy is?
remains 50%

It is possible that no child would be affected or every
child is affected
Incidence of certain AD diseases is higher at specific geographic locations are?
1:500 - Familial Hypercholesterolemia (FH) in European and Japanese populations

1: 1000 - Myotonic Dystrophy certain parts of North America

1:2500 to 1:3000 for Huntington Disease, Neurofibromatosis (NF1) in North Europe.
If both parents are affected Aa x Aa what are the gametes?
AA, Aa, aa==1:2:1
3 affected:1 normal
One normal parent & one affected parent what are the pheno & geno?
aa x Aa
Aa, Aa, aa, aa
2 affected: 2 normal
What are examples for autosomal dominant gene disorders?
Neurofibromatosis
Achondroplasia
Marfan Syndrome
Huntington disease
Myotonic dystrophy
What is the incidence of Neurofibromatosis (Type 1)? How many are due to new mutation?
Incidence: 1:3000 to 1:5000.

50% of cases due to new mutation
Where is the mutation found for Neurofibromatosis Type 1?

What type of inheritance is it?
High mutation rate mainly due to large gene (400kb in long arm of chromosome 17).

Pleiotropy
What does NF1 gene cause, and what is it also an example of?
defective production of Neurofibromin

Allelic heterogeneity
Where is the mutation of achondroplasia? What is the incidence, penetrance? What type of dominance?
Mutation in chromosome 4p

Incidence: - 1:1500

Complete Penetrance

80% to 85% of patients are new mutants

Homozygote much more severe (mostly infantile deaths)

Heterozygotes - normal intelligence and normal life

Also considered as an example for incomplete dominance
What is a common characteristic of achondroplasia? What are the features?
Skeletal disorder
short limbed dwarfism

Features:
Long, narrow trunk
Short extremities, particularly proximally
Large head , low nasal bridge, narrow foramen magnum
Exaggerated lumbar lordosis (forward curvature of spine)
What is familial testotoxicosis? What type of dominance?
Male limited precocious puberty

Autosomal dominant

Features: Boys develop secondary sexual characters as early as at about 4yrs.
Can be transmitted to male child either by Unaffected mother of affected father
Where are the manifestations seen in Autosomal Recessive disorders? Who acts as a carrier?
seen only in Homozygotes

Carriers: Heterozygotes
Both males and females are affected by AR disorders what is the exception?
Hereditary hemochromatosis
What is a feature of AR disorder regarding mutant alleles?
Mutant alleles may remain in heterozygous state (without phenotypic expression) in a family for numerous generation
Which AR dieases is common among population that consanguinity would not play a role?
Cystic Fibrosis
What is coefficient of inbreeding (F)? What is it based on?
Coefficient of inbreeding (F) is the probability that a homozygote has received both alleles at a locus from same ancestral source

Based on Consanguinity
What is Tay Sachs disease? What is it an example of? What type of disorder is it? Who is it common? What enzyme is deficient? What accumulates?
Lysosomal Storage Disorder

Example for a Sphingolipidoses

Example for ethnic variation in allele frequency

Common among Ashkenazi Jews of N. America

Deficiency of the enzyme Hexosaminidase A

Accumulation of ganglioside, GM2
Where is the mutation found for Tay Sachs?
Mutation of HEXA gene

Chromosome 15
Where is the mutation found in Sickle Cell Anemia?
Mutation of gene coding for B chain of Hb

Chromosome 11
What is a condition concurrent?
A condition concurrent is two conditions that are capable of occurring together, and the parties are bound to perform at the same time.

Ex: I will sell you a book for $10. (you giving me the book and me giving you the $10 are concurrent)
What is Xeroderma Pigmentosum? How is it caused? What are the symptoms?
A rare genetic disorder of DNA Repair (Nucleotide excision repair)

Caused by gene mutation – leading to defective formation of protein/enzyme required for nucleotide excision repair of pyrimidine-pyrimidine dimer

Symptoms: UV light sensitivity Skin cancer, Neurological dysfunction
What is sex linked inheritance?
Genetic trait transmitted through X chromosome aka X linked
Is X linked character transmitted from father to son?
No because the gene present in the X chromosome gives its expression no matter Dom or Rec.

Only mother to son
What is X-Chromosome inactivation
?
In each somatic cell of women only one X chromosome is transcriptionally active.
Whereas the second X chromosome is almost transcriptionally inactive and exists in the form of heterochromatin
This inactive chromosome constitutes Barr body in the female somatic cells
How is the number of barr bodies calculated?
# of barr bodies = # of X chromosomes-1
i) If the pattern is XX No. of barr body
ii) If the pattern is abnormal, eg. XXX;
iii) If the pattern is XO (Turner’s syndrome)
i) If the pattern is XX No. of barr body 2-1 = 1

ii) If the pattern is abnormal, eg. XXX;
No. of barr body 3-1 = 2

iii) If the pattern is XO (Turner’s syndrome)
No. of barr body 1-1 = 0
What is the mechanism of inactivation of an X chromosome?
Involves DNA methylation. This results in the formation of transcriptionally inactive genes in chromosomes.
What is the inactivation centre?
It is presumed that proximal part of long arm (q) of X chromosome take part in barr body formation.

Evidences: In abnormal chromosome that
lacks q arm, no barr body is formed.
What deterines X inactivation centre?
The X inactivation centre contains an unusual gene XIST, which is supposed to play a key role in X inactivation

This XIST gene is transcriptionally silent in the active X chromosome but expressed (transcriptionally active) in inactive X chromosome
Where are transcriptionally active genes located?
mainly in Pseudoautosomal region of inactive X chromosome
What are the genes that are carried by the y chromosome known as?
Holandric genes
Where is the SRY gene located and what does it code for?
SRY gene located at its p arm. It codes for testis determining factor (TDF)
What does mutated AZF gene cause?
AZF genes, the mutation of which leads to azoospermia & oligospermia
What are some X-linked recessive disorders?
A number of well known diseases are caused by X-Linked Recessive Genes. These include
Hemophilia A,
Duchenne Muscular Dystrophy
Glucose 6 phosphate dehydrogenase deficiency
Red – Green Color Blindness.
Due to the presence of 2 copies of X chromosomes, females can exhibit how many types for X- Linked Inheritance?
Ex. Hemophilia
Due to the presence of 2 copies of X chromosomes, females can exhibit 3 types of genotypes for X- Linked Inheritance

HH=homo normal
Hh=heter
hh=affected
What is the incidence of Duchenne Muscular Dystrophy? Features? What is elevated? How is it caused?
Incidence: Approx.1/3500 male births

Progressive myopathy, muscle weakness

Elevated creatine kinase level in plasma

Caused by mutation in DMD gene that codes for a protein called as Dystrophin.

DELETION
What causes hemophilia A & B? What is the incidence?
Caused due to mutation of 2 separate genes

Incidence:
Hemophilia A – 1/5000 to 1/10,000 in male birth
Hemophilia B-1/100,000, comparatively rare
What does Hemophilia A affect? What factor is defctive in Hemophilia B?
Hemo A affects Clotting Factor VII

Factor IX is defective in Hemo B
What causes Fragile X syndrom? What type of genetic complication is this? What is characteristic?
Another example for abnormal unstable trinucleotide repeat expansion

Also an example for Somatic mosaicism

Characterized by mental retardation
What is Vitamin D resistant Rickets? Where is the defect?
Familial hypophosphatemia

Defect in renal tubular resorption of phosphate

Presents in 1st year of life with progressive limb deformities, growth retardation, and rickets
What is Rett Syndrome?
Occurs almost exclusively in females
Lethal in males
Severe neurological manifestations
What is Mosaicisim?
It is a pattern in which the cells of an individual or a tissue are derived from a single zygote but from more than a single genetically distinct cell line.
When is mosaicism caused?
Mutation during embryonic development is responsible for mosaicism


Mosaicism may be observed in either somatic cells or germline cells and is probably responsible for many unusual phenotypic observations.

If the mutation occurs prior to the separation of germline cells from somatic cells, the effect is seen in both the somatic and germline cells
What is Somatic Mosaicism?
Mutation occurring on somatic cells during embryonic development

May be manifested as a segmental patchy abnormality
What is Germline Mosaicism? Where is mutation?
Appearance of a new autosomal dominant mutation in more than one member in a sibship could be due to Gemline Mosaicism

Due to mutation in germline cells of the parent (male or female) the defect is subsequently passed into the offspring. Here the parent with germline mosaicism is phenotypically normal
When does genomic imprinting take place?
The Genomic Imprinting takes place during gametogenesis, before fertilization
What is uniparental disomy? What is isodisomy?
What is Heterodisomy?
It is a pattern where a cell contains two chromosomes derived from one parent.

If identical chromosome is present in duplicate --- Isodisomy

If both homologous chromosomes from one parent are present ---- Heterodisomy.
How many kb does Mitochondrial DNA have? How many genes? What do those genes cod for?
Circular, containing about 16.5 Kb.

Each mt.DNA contains 37 Genes

22 genes code for tRNA, 2 for rRNA and 13 for polypeptides that comprise enzymes of Oxidative Phosphorylation system
How many mt. DNA do most cells contain?
at least 1000
Where do we get out mitochondrial DNA from?
MOTHER only
What is Homoplasmy? What is heeteroplasmy?
Homoplasmy: A daughter cell gets either pure normal mt.DNA or mutated mt.DNA

Heteroplasmy: A daughter cell gets both normal and mutated mt.DNA
What does the term mitochondrial genetic bottle neck mean?
In females the total number of mitochondria is reduced considerably in premature oocytes and then suddenly amplifies in mature oocytes. This process is termed as mitochondrial ‘genetic bottle neck’
What is affected by mutation of mt.DNA? What is an example? What are the symptoms?
Mutation of mt.DNA generally affects those tissues that need intact oxidative phosphorylation.

Especially Neuromuscular tissues

Common Clinical symptoms: Myopathy, encehalopathy, Ataxia, Retinal degeneration and Loss of function of external ocular muscles.
What are examples of disorder caused due to mutation in mt.DNA?
1. Leber Hereditary Optic Neuropathy: Homoplasmic pattern, Symptoms are – Rapid optic nerve death and Blindness

2. Mitochondrial encephalomyopathy, lactic acidosis and stroke (MELAS):
Heteroplasmic pattern, Symtoms are ….