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60 Cards in this Set

  • Front
  • Back

TATA Box

Transcription initiation complex binds here

Pre-RNA processing includes:

5' capping and polyadenylation at the tail

Ribosomes

Builds proteins by holding mRNA and tRNA in position to enable translation

tRNA

Binds to an mRNA codon to deliver the corresponding amino acid

Event that signals the termination of translation

Ribosomes reached the end of the mRNA

Peptidyl transferase

Binds the amino acids

30s

Smaller subunit of ribosome


Bind to mRNA and then 50s subunit binds to it

Iniation Factor 1

Binds at the A-site of the 30s subunit

Entire bacterial ribosome

70s

AUG

Start codon

Anticodon

The sequence on a tRNA that binds to a codon on mRNA

UAA, UAG, UGA

Stop codons

U1

Protein in snRNA that binds to GU donor site

U2

protein in snRNA that binds to the A branch point

RNA polymerase 2

Promotor


Proximal elements. Core promotor


GC Box. CAT Box. TATA Box. Iniation

GC Box

Found at around -90 upstream from gene to be copied

CAT Box

Found at around -75 base pairs upstream from gene to be copied

TATA Box

Found at around -30 base pairs upstream from the gene to be copied

Polycistronic

More that one gene on a price of mRNA

Central Dogma of biology

Replication of DNA by replisome


Transcription by RNA Polymerase


Translation by ribosomes

Replication

The copying of DNA template stands by the replisome

Transcription

The formation of mRNA from a DNA template

Translation

The formation of a protein by reading the mRNA

Prokaryote

Cells with no nucleus


Bacteria and Archaea

Eukaryote

Have membrane bound nucleus and organelles

Transformation

The uptake of "naked" DNA

Transduction

Bacteriophagic transfer of double stranded DNA

DNA was first discovered in...

Bacteria

Griffith experiment

Showed the rough pneumococcal bacteria could transform in the presence of "naked" DNA from smooth pneumococcal bacteria

Avery experiment

Showed that the pneumococcal bacteria were transformed by DNA, not protein

Hersey-Chase experiment

Labeled bacteriophage with either radioactive DNA or radioactive protein to show that the generic material that is transferred is DNA

Guanine

Thymine

Cytosine

Uracil

Adenine

Pyrimidines

Single ring nucleic acids


CUT the PYe


Cytosine


Uracil


Thymine

Purines

Double ring nucleic acids


PURe As Gold rings


Adenine


Guanine

Ribose

Deoxyribose


Direction of replication

5'-3'

Direction of translation

5'-3'

Direction of transcription

5'-3'

Width of DNA double helix

20 Å

Distance between base pairs

3.4 Å

Length of helical turn

34 Å

Number of base pairs in one helical turn

10

Method of compaction of DNA in prokaryotes

Super-coiling

Method of compaction of DNA in eukaryotes

Histones forming a nucleosome

DNA polymerase 3

Adds nucleotides to template strand of parent DNA

E subunit of DNA polymerase 3

3'-5' exonuclease activity


Removed mismatched base pairs and fixes mistakes

a subunit of DNA polymerase 3

Catalytic proteins

B clamp

Part of DNA polymerase 3

DNA ligase

Forms phosphodiester bind between nucleotides after RNA primer is removed

DNA polymerase 1

Removes RNA primers and inserts DNA to fill gap

Okazki fragments

Chunks of DNA produced by the lagging stand during replication


Start with an RNA primer

Reverse transcription

The formation of DNA using RNA as a template

RNA polymerase

Catalyzes RNA synthesis in the 5'-3' direction

holoenzyme

Consists of


2 alpha proteins


A beta and a beta prime proteins


An omega protein


A sigma protein

Major types of RNA

mRNA


tRNA


rRNA


snRNA