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243 Cards in this Set

  • Front
  • Back
To what kingdom do prokaryotic cells belong to?
MONERA
What unique characteristic defines prokaryotic cells?
No membrane bound organelles. Genetic material is in "nucleoid" region.
Are all bacteria eurkaryotic or prokaryotic?
Prokaryotic
What is another name for a glyocalyx?
Capsule (slime layer)--a layer of gelatinous material covering the cell.
What is a capsule/glyocalyx is generally composed of?
Polypeptides, polysaccharides, glycoprotein. Composition varies with species.
What are the four functions of a capsule/glyocalyx?
1) ADHESION to surfaces
2) PROTECT bacteria from PHAGOCYTOSIS
3) STORAGE of nutrients
4) OSMOTIC barrier
What do microbes generally use for locomotion/motility?
Flagellum (sl)
Flagella (pl)
What is peritrichous?
Having flagella uniformly distributed all over the body
Having flagella uniformly distributed all over the body
What is amphitrichous?
Having flagella at both ends.
Having flagella at both ends.
What is monotrichous?
Having flagellum at one pole (end) only.
Having flagellum at one pole (end) only.
What is lophotrichous?
Having a tuft of flagella at one end.
Having a tuft of flagella at one end.
What are fimbriae and pili (pl)/pilus(sl)?
Small hair-like projections
What are the functions of fimbriae and/or pili/pilus?
1) SEXUAL CONJUGATION--pili form tubes for transfer of genetic material.
2) Surface ADHESION
3) BACTERIOPHAGE receptors--some viruses attach to pili
What are the three functions of a cell wall (lattice/net-like structure)?
1) Maintains the shape of the cell
2) Physical protection
3) Enables the cell to escape rupture (lysis) in a HYPOTONIC environment
What does the cell wall consist of?
Peptidoglycan units that repeat over and over
Gram POSITIVE cell walls contain?
Many layers of peptidoglycan. Forms a thick rigid structure. Contains TEICHOIC ACID.
Gram NEGATIVE cell walls contain?
Thin layer of peptidoglycan. Looser lattice (less rigid cell wall). High lipid content. NO TEICHOIC ACID.
What are the functions of the plasma membrane?
1) Regulates diffusion in/out of the cell
2) Contains active transport system
3) Site of enzymes involved in ATP production
What model is the plasma membrane also known as?
"Fluid Mosaic Model" Phospholipid bilayer. A "dynamic" arrangement of phospholipids and proteins
What do chromatophores contain?
CHLOROPHYLL--only found in photosynthetic bacteria
Is the nuclear material of prokaryotic cells contained in a nucleus?
No. Chromosome (DNA) loose in the cytoplasm in the nucleoid region
What are plasmids?
Small, circular, double-stranded DNA molecules
What are ribosomes?
Granules scattered throughout the cytoplasm
What is protein synthesis?
Assembling of amino acids into polypeptides
What are cytoplasmic inclusions?
Accumulated store materials:
1) Metachromatic granules (Volutin)
2)Polysaccharide granules
3) Lipid inclusions
Metachromatic granules (Volutin) is a stored form of what?
Phosphate. Metachromatic granules readily take up stains
What are magnetosomes?
Inclusions of iron oxide. Act like magnets. May protect cells from accumulation of hydrogen peroxide
What is an endospore?
A highly resistant structure produced by bacteria.

Highly resistant to desiccation, heat, toxic chemicals (calcium and dipicolinic acid).

Low metabolic activity (dormant). Low H2O content. Thick spore coat.
All members of what family produce endospores?
Bacillaceae

Ex: Genus Bacillus and Clostridium
Is the formation of endospores a reproductive process?
No. Vegetative (metabolically active) cell forms a single spore.

Germinates to form one vegetative (metabolically active) cell
What is unique about eukaryotic cells when compared to prokaryotic cells?
Eukaryotic cells have a true nucleus containing genetic material.

Contain membrane bound organelles
What is a cytoskeleton?
A network of fibers that form a dynamic framework for support and movement
What are the different types of filaments do eurkaryotic cells have?
Microfilaments, actin filaments, intermediate filaments
Which kingdoms are classified as eurkaryotic?
PROTISTA, Plantae, Fungi, Animalia
What do MICROTUBULES form?
Microtubules form cilia, flagella, and centrioles
What are organelles?
Specialized structures that perform specific functions. They can also sequester reactions.
How do organelles increase their surface area?
They contain folded membranes
This organelle is spherical or oval and contains the cell's DNA.
Nucleus
This structure has a double membrane perforated by pores. It maintains nuclear shape and regulates transport in/out of the nucleus.
Nuclear Envelope/Membrane
These are one or more spherical bodies within the nuclear envelope and functions in the synthesis of RIBOSOMAL RNA
Nucleolus
This organelle is studded with ribosomes and is the site of synthesis of secretory proteins and membrane molecules
ROUGH Endoplasmic Reticulum (ER)
This structure lack ribosomes. It synthesizes phosolipids, fats and steriods
Smooth ER (Endoplasmic Reticulum)
These two structures together are involved in the synthesis of macromolecules
Rough and Smooth ER
These are formed of 2 subunits: 60S and 40S
Ribosomes
Where are free ribosomes found?
Suspended in the cytoplasm
Where are bound ribosomes found?
Attached to the ER (rough)
Ribosomes are involved with the synthesis of what?
Proteins
What apparatus/organelle modifies macromolecules?
Golgi Apparatus
The Golgi Apparatus are compose of flattened sacs that are stacked on one another. What are the functions of the this organelle?
It receives and modifies products from the ER. It packages products in vesicles for: transport, secretory, and storage.
These are membrane-enclosed sac of HYDROLYTIC enzymes (for catabolism). It functions in phagocytosis, recycles cell's own organic material, and programmed cell destruction (apotosis)
Lysosomes
Excess lipid accumulation that damages brain cells is known as what type of disease?
Tay-Sachs disease
Tay-Sachs disease (a lysosomal storage disease) is a result of what?
Lysosomes lacking one of the hydrolytic enzymes to break down excess lipid
The "power house of the cell"
Mitochondria
The inner membranes of the mitochondria folds to form what is known as?
Cristae
Where are the sites of cellular respiration (ATP production) in the mitochondria?
Cristae
This important structure is semipermeable and selectively permeable. It controls what enters/exits. Maintains cell's homeostasis. It keeps the internal chemical composition within narrow limits
Plasma Membrane
The movement of materials across the plasma membrane is known as?
Transport
This type of transport does not require energy from the cell
Passive transport. [Diffusion = passive]
What is simple diffusion?
Molecules move from an area of greater concentration to an area of lesser concentration
When a carrier protein combines with a specific substance and moves it across the membrane is known as?
Facilitated diffusion. Can be specific and nonspecific
The diffusion of water through a semipermeable membrane, from higher concentration to lower concentration is known as?
Osmosis
What is osmoregulation?
The control of water balance
What is an isotonic solution?
Concentration of dissolved substances are the same inside and outside the cell. No net flow of water.
What is a hypertonic solution?
High solute concentration. Water will move towards an area of higher solute concentration.
What is a hypotonic solution?
Low solute concentration. Water will move from an area of HIGH solute concentration to an area of LOW solute concentration
What is plasmoptysis?
Bursting of a cell in a hypotonic solution (osmotic lysis)
What is plasmolysis?
Shrinkage of the cytoplasm due to loss of water in a hypertonic solution
What are channel proteins?
Proteins which form channels through the membrane allowing passage of certain molecules
What are gated channels?
Protein channels that open/close
What can active transport do?
It can move substances against their concentration gradient. Requires energy (ATP). EX: sodium-potassium pump.
How are large proteins transported?
Endocytosis
What 3 types of endocytosis?
1) Phagocytosis (cell eating)--pathogen is enclosed in membrane-bound vesicle

2) Pinocytosis (cell drinking)--pathogen is enclosed in membrane-bound vesicle

3) Receptor-Mediated Endocytosis--how most human virsuses get into cell
When vacuole fuses with plasma membrane and expels contents from cell is known as?
Exocytosis
Who was the first to use porcelain filters to remove bacteria?
Charles Chamberland
What did Dmitri Ivanovsky discover?
Some filtrates (after using porcelain filters) were still infectious
The term "Contagium vivium fluidium" (Contagious living fluid) was coined by who?
Martinus Beijerrinck. Later coined the name virus (meaning poison or venom)
What did Wendell Stanley do?
Crystallized the first virus (TMV). Consisted of protein and RNA. Viruses first observed with an electron microscope
Who came up with the concept that certain inherited traits seem to be passed from parent to offspring as discrete hereditary "particles."
Gregor Mendel (Mendel's Particles)
Which two concluded that genetic material of some viruses was DNA?
Hershey and Chase
Can the nucleic acid be both DNA and RNA at the same time?
No. It's either DNA or RNA. Never both
What is the protein coat that surrounds the nucleic acid in viruses called?
Capsid--made by virus protein; not human protein.

**Capsid and capsule are not the same thing**
What the protein subunits in viruses called?
Capsomeres
When a virus stimulates antibody production, what is called?
Antigenic/Immunogenic
Some proteins have a/an __________ around the protein coat.
envelope
What does a virus need to multiply?
A host cell.

1) Viruses multiply in living cells--they cannot synthesize proteins or generate ATP)

2) Viruses take over the metabolic activity of host cells--as a result, it is difficult to disrupt viral replication without interfering with host cell functions
Most viruses can only be visualized with what?
An electron microscope
What are some typical shapes of viruses?
Helical, spiral, icosahedral (20 sided polyhedron), envolped, complex
What can HEAT do to viruses?
Most are destoyed by >60C, 140F
What can extreme cold do to viruses?
Not much. Most can survive -76C for over a year
Can viruses tolerate desiccation?
Yes. Some viruses can tolerate drying
At which pH range can viruses tolerate?
Around 5-9 pH
Are disinfectants effective antiviral agents?
No. Most disinfectants are infective. Alcohol can destroy lipid envelope viruses
What are the most effective agents against viruses?
Oxidzing agents: Hydrogen peroxide, chlorine, iodine, UV light damages nucleic acid
What are four ways to cultivate viruses?
1) Living animals and plants

2) Embryonated eggs--virus is injected into embryonic tissues and membranes

3) Tissue/Cell Culture--cells in solution that provides: nutrients, proper osmotic pressure, pH, etc

4) Bacterial culture
Of the four methods to cultivate bacteria, which is the easiest and most economical?
Bacterial culture

**Limitation: only viruses that are specific for bacteria (phage)
How long can viruses be cultivated in Primary cell and embryonic diploid cell lines?
For a short period of time--can only divide so much (Hayflick limit).
How long can viruses be cultivated in Continuous/Immortal cell lines?
They can be maintained in vitro (glass) indefinitely. HeLa cell line--made possible by Henrietta Lacks
List the 5 stages/steps of T-even Bacteriophage Lytic Cycle
1) Attachment/Adsorption

2) Penetration

3) Biosynthesis

4) Maturation/Assembly

5) Release/Lysis
What happens during the attachment/adsorption step of the T-even Bacteriophage Lytic Cycle?
Phage tail fibers attach to specific receptors on bacteria.
What happens during the penetration step of the T-even Bacteriophage Lytic Cycle?
Phage release enzyme --> lysosome dissolves part of the bacterial cell wall.
What happens during the biosynthesis step of the T-even Bacteriophage Lytic Cycle?
Viral DNA takes over the machinery of the host cell and begins producing viral DNA and structural components
What happens during the maturation/assembly step of the T-even Bacteriophage Lytic Cycle?
Phage DNA assembles into complete viruses
What happens during the release/lysis step of the T-even Bacteriophage Lytic Cycle?
Phage lyzosome breaks down bacterial cell wall and multiplied phages are released. Viron is fully ready to infect again
What is burst time?
The time from adsorption of virus to its release (in minutes)
What is burst size?
The average number of virons released by a cell (50-200 virons for T-even phage)
What is lysogeny?
Viral DNA is incorporated into the host DNA without causing lysis of the host cell
What is a lysogenic cell?
A cell containing a prohage (provirus--human/animal)
What are prophage genes repressed by?
Repressor proteins
What is latency with regards to viruses?
The ability to remain in host cells for long periods
What is meant by phage conversion?
The host cell carrying a lysogenic phage which may exhibit new properties
What is meant by induction/excision?
Certain environmental factors may cause a prophage to revert to the lytic cycle. EX: UV light or certain chemicals.
What is specialized transduction?
When a prophage is excised from the host chromosome it can take with it adjacent DNA from the bacterial chromosome
When compared to prophage, animal viruses differ in which steps of their cycles?
* Attachment
* Penetration occurs by receptor-mediated endocytosis
* Uncoating by viral or host cell enzymes
Biosynthesis
*Maturation and release (Budding)
What is it called when a virus remains in asymptomatic host cell for long periods (Lysogeny)?
Latent viral infections
Latent viral infections can be reactivated by what?
Fever, UV light, stress, trauma, hormaonal changes and repair mechanisms in the cell. EX: cold sores, shingles
Which two found that leukemia could be transferred to healthy chickens by cell-free filtrates containing viruses?
Wilhelm Ellerman and Olaf Bang
Who discovered that chicken sarcoma was similarly transmitted as discovered by Wilhelm Ellerman and Olaf Bang?
F. Peyton Rous
Genes that can cause a normal cell to be transformed into a malignant cell are known as?
Oncogenes
Which two Noble prize winners discovered that cancer-inducing genes carried by viruses are derived from the animal cell genome?
Michael Bishop and Harold Varmus
What are proto-oncogenese?
They normally direct synthesis of products for cell growth and development. When a virus contain an oncogene is introduced into a cell, the cell may be unable to regulate synthesis of the virus's oncogene. the excess product may result in uncontrolled cell division

Proto-oncogenes can become an oncogene due to mutations or increased
What are prions and who received the Noble Prize in Medicine for is work on prions?
Prions are proteinaceous infectious particle. Stanley Prusiner
How can infectious proteins be transmitted?
Inherited and transmitted by: ingestion, transplant, surgical instruments
What are some diseases/disorders associated with Spongiform encephalopathy?
Sheep scrapie, Creutzfeldt-Jakob disease, Gerstmann-Straussler-Scheinker syndrome, fatal familial insominia, mad cow disease
What are some characteristics of prions that make them so dangerous?
1) Resistant to heating

2) No sensitive to radiation treatment

3) Not destroyed by enzymes that digest DNA or RNA

4) Not sensitive to protein denaturing agents such as phenol

5) Shown to easily move from one species to another
What is PrPc?
Normal cellular prion protein on cell surface--well all have and need
What is PrPsc?
Scrapie protein is believed to result from a mutation in a normal gene for PrPc or contact with the harmful altered/harmful form converts the normal protein into harmful form
What results when harmful the PrPsc form accumulates in brain cells?
Plaques
What are antibiotics?
Anitmicrobial substances produced by microorganisms
What are the 5 major genera of antibiotics?
1) Penicillium (fungi)

2) Cephalosporium (fungi)

3) Streptomyces (Actinomycetes)

4) Micromonospora (Actinomycetes)

5) Bacillus (Gram + Bacteria)
What does a bacteriostatic do?
Inhibits the growth of bacteria but does not kill them
What does a bactericidal do?
It kills bacteria
What is a narrow spectrum antibiotic?
Affect only a select group of microbes.
What is a broad spectrum antibiotic?
Affect large numbers of bacteria (Gram +/-) and normal flora as well
What is a superinfection?
An overgrowth by a resistant organism?
What are the modes of actions of antibiotics?
1) Inhibition of cell wall synthesis (doesn't apply to us)

2) Inhibition of Protein synthesis

3) Injury to plasma membrane

4) Inhibition of nucleic acid synthesis

5) Inhibition of the synthesis of essential metabolites
What are the 4 mechanisms of RESISTANCE by bacteria for antibiotics?
1) Ability to destroy the antimicrobial

2) Prevent penetration of the antimicrobial

3) Alteration of target structure

4) Active transport (EFFLUX pumps)--pumps antimicrobial against its concentration gradient
What are 4 ways we can control resistance of bacteria for antibiotics?
1) Administer effective dose and finish the complete dosage

2) Avoid using outdated, weakened antibiotics

3) Eliminate indiscriminate use

4) COMBINE THERAPY--two or more antibiotics given simultaneously

--> Combine an antibiotic with a B-lactamase inhibitor
What is the term for when antibiotics increase the activity of one another? EX: Penicillin and Streptomycin
Synergistic
What is the term for when antibiotics knock each other out (compete against one another)? EX: Penicillin and Tetracycline
Antagonistic
What is special about Augmentin?
Amoxicillin combined with Potassium clavulanate (a B-lactamase inhibitor)
The sum of all chemical reactions that occur within a living organism is known as?
Metabolism
The synthesis of chemical compounds--combine simpler substances into more complex molecules, is known as?
Anabolism--requires energy (endergonic). EX: protein from amino acids
What is catabolism?
The break down of complex compounds into simpler ones--releases energy (exergonic)
What are enzymes?
Biological catalysts--binds to substrates at active site. Specialized proteins that speeds up a reaction without being altered by the reaction
What does an enzyme lower?
The activation energy of reactions.
What gives enzymes their specificity?
Active sites on the enzyme
What is the complex called when an enzyme binds with a substrate?
Enzyme-substrate complex--some enzymes are protein only, other have a protein and nonprotein cofactor
What does an enzyme regulate when it binds to the substrate?
1) Physical shape

2) ionic character
What is the protein portion on the enzyme called?
Apoenzyme
Cofactors for enzymes are?
the nonprotein component (can be metallic).

**Coenzyme: organic cofactor
Apoenzyme + cofactor = ?
Holoenzyme--whole functional enzyme
Lock and key fit of substrate and enzyme means what?
Enzymes only react with a specific substrate. Specificity is due to surface configuration/conformation (shape) of the protein

**Conformation is the result of: primary, secondary, tertiary and quaternary structures
What are the weak interactions that enzymes together?
1) Hydrogen bonding

2) Ionic bonding

3) Hydrophobic Interactions (nonpolar R groups)
Bridges between two cysteine monomers is a what type of bond?
Disulfide bond--covalent linkage
What are the 5 factors that influence enzyme activity?
1) Denaturing by temperature and pH

2) Substrate concentration

3) Competitive inhibition

4) Noncompetitive inhibition (Allosteric--another site)

5) Feedback inhibition
Explain the effects of temperature on enzyme activity.
Enzymatic activity increases with increasing temperature until the enzyme, a protein, is denatured by heat and inactivated. At this point, the reaction rate falls steeply
Enzymatic activity increases with increasing temperature until the enzyme, a protein, is denatured by heat and inactivated. At this point, the reaction rate falls steeply
Explain the effects of pH on enzyme activity
The enzyme illustrated is most active at about pH 8.0
The enzyme illustrated is most active at about pH 8.0
Explain the effects of substrate concentration on enzyme activity
With increasing concentration of substrate molecules, the rate of reaction increases until the active sites on all the enzyme molecules are filled, at which point the maximum rate of reaction is reached.
With increasing concentration of substrate molecules, the rate of reaction increases until the active sites on all the enzyme molecules are filled, at which point the maximum rate of reaction is reached.
Where do exoenzyme/extracellular enzymes function?
Outside of cell
Where do endoenzymes/intracellular enzymes function?
Inside of cell
What is genetics?
The science of heredity. The study of genes: how they carry information, pass that info on and how is that info expressed
What are the functional units of heredity?
Genes--contain the info (codes) for inherited characteristics: morphology, metabolism, behavior, pathology, etc
What is genotype?
The genetic makeup of an organism--the information itself, expressed or not.
The total of all genes (genetic information) in a cell is a?
Genome
The physical/external manifestation of the genotype is called?
Phenotype--physical traits or appearance
Genes consist of what?
Segments of DNA
What is DNA
Deoxyribonucleic acid. Nucleic acid (repeating units called nucleotides. Three basic components:

Bases: Adenine, Thymine, Guanine, Cytosine
Sugar: Deoxyribose
Phosphate: Backbone
In eukaryotic cells, what is DNA wound around?
Clusters of HISTONES (chromosomal proteins)
How are the 2 strands of DNA arranged in DNA?
2 ANTIPARALLEL strands joined by HYDROGEN BONDS
During DNA replication, what happens to DNA's double helix structure?
It is unwound by enzymes
What adds new bases to the new DNA strand?
DNA Polymerase
What is meant by SEMICONSERVATIVE with regards to DNA replication?
When DNA replication is complete, there is one new strand and one original strand that are joined together.
What are RNA sugars made up of?
Ribose
What is the central Dogma of modern biology?
DNA---------(transcription)----->mRNA--------(translation)------->Protein (Proteins originate from DNA)
The process of synthesizing mRNA from a DNA template is known as what?
Transcription
Transcription involves/requires what?
RNA Polymerase binding to a promoter. Uracil is substituted for Thymine
In eukaryotic cells, what processing step is needed to have a functional mRNA after transcription?
Remove of INTRONS and EXONS are joined together with a CAP and TAIL and then exits the nucleus
The process of using an mRNA template for protein synthesis is known as what?
Translation
What is a codon?
A set of 3 bases on an mRNA. Each codon specifies a specific amino acid.
What are the 3 steps in Translation?
1) Initiation--mRNA becomes associated with a ribosome

2) Elongation--a series of Transfer RNAs (tRNA) each with a specific amino acid attaches to mRNA in the ribosome

3) Termination/Stop--a termination or stop codon/signal attaches and the ribosome, mRNA and protein separate
What type of bonds form between amino acids?
Peptide bonds
What carries the ANTICODON and the amino acid?
tRNA
Who worked with two strains of Strep. pneumoniae and discovered genetic transfer?
Frederick Griffith:

Heat Killed Virulent (with capsules) + Live Avirulent (no capsules) ----> Live Virulent (with capsules)
What is TRANSFORMATION?
The process in which genes are transferred from one bacterial cell to another as "naked" DNA in solution
What is the mechanism of transformation of genes in bacteria?
Fragments of DNA from lysed cells are take up by other bacteria and recombine with their own DNA
The transfer of genetic information by cell to cell contact is known as what?
CONJUGATION (via pilus):

Donor (F+) cell attaches to recipient (F-) cells by means of sex pili and transfer genetic material.

Can transfer plasmids or parts of its own chromosome
The transfer of genetic information from one bacteria to another by means of a bacteriophage is known as what?
TRANSDUCTION
What is a bacteriophate?
A virus that infects bacteria
Small, self-replication circles of DNA found in many bacteria are called?
Plasmids
What is an F Plasmid?
Fertility Plasmid--bacterium carrying the fertility factor transfers the gene(s) coding for the factor to a bacterium lacking it by CONJUGATION
What does a CONJUGATIVE plasmid carry?
It carries genes for sex pili and transfer of the plasmid
What do Dissimilation plasmids encode for?
They encode enzymes for the catabolism of unusual compounds.

EX: Some Pseudomonas can metabolize toluene, camphor and petroleum hydrocarbons--possible use in BIOREMEDIATION
What does R Plasmids (resistance factors) provide?
Provide resistance to antibiotics and other chemicals--has a gene that provides that particular resistance
Can there be plasmids for toxin production?
Yes. EX: Tetanospasmin Staphylococcal entertoxin
True or False: Genes for several traits may be coupled together on the same plasmid.
True
What are TRANSPOSONS (Jumping Genes)?
Segments of DNA that can move their position in the genome
Who discovered TRANSPOSONS (Jumping Genes) but wasn't fully recognized for it at the time?
Barbara McClintok
What do transposons contain?
Insertion sequences that code for an enzyme for cutting and resealing DNA (Transposase)

Complex transposons carry other genes in addition to transposase genes
Any alteration in the base pair sequence is known as what?
Mutations

Mutations in gametes can be passed onto offspring

Bacteria does not have gametes, any mutation(s) get passed on
What are spontaneous mutations?
They are the results of mistakes in replication or natural background radiation.

1 mutation per 10^5 - 10^6 replications
What are induced mutations?
Mutations that are caused by mutagens/mutagenic agents such as X-rays, carcinogens, nucleoside analogs
What is a POINT mutation?
Base pair substitutions--alteration in a single base
What are three types of point mutations?
1) Same-sense mutation

2) Mis-sense mutation

3) Nonsense mutation
What is same-sense mutation?
It's a point mutation in which the mutation codes for the SAME amino acid
What is mis-sense mutation?
It's a point mutation which codes for a DIFFERENT amino acid altogether

EX: Sickle Cell Anemia--CTT = Glutamic acid changed to CAT = Valine
What is a nonsense mutation?
It's a point mutation that codes for a "stop" signal or a stop signal is substituted with an amino acid
Insertions or Deletions are what types of mutations?
FRAME SHIFT MUTATION

EX: Deletion THE CATE ATE THE RAT
THC ATA TET HER AT
These types of enzymes are produced constantly (present at all times), not subject to repression--"has no off button"
Constitutive Enzymes

***Other enzymes are expressed only as needed***
What are repressive enzymes?
These enzymes are subject to repression--can be shut off
These enzymes are only produced when needed.
Inducible enzymes
What type of gene codes for a repressor protein?
Regulatory gene
What is the site of RNA polymerase attachment called?
Promoter
This gene acts as a switch. Controls transcription of the structural gene.
Operator
What gene codes for the amino acid sequence of a protein?
Structural gene
This operon is normally in the "on" mode but is turned off when the gene product is in abundance
Repressible operon

***The gene product acts as a COREPRESSOR. The corepressor activates the repressor
What is biotechnology?
The use of microorganisms, cells or cell components to make a product. EX: foods, antibiotics, vitamins, enzymes
The manipulation of genetic material for practical purposes is known as?
Genetic engineering
Breeding/culturing a naturally-occurring organism/microbe that produces desired product(s) is known as?
Artificial selection
What is SITE-DIRECTED mutagenesis?
Changes a specific DNA code to change a protein
What is RECOMBINANT DNA technology?
Techniques for recombining genes from different sources in vitro and transferring this recombinant DNA into a cell where it may be expressed

***This allows for genes to be moved across species barriers***
What are the NATURAL BARRIERS that recombinant DNA technology can overcome?
Anatomical, molecular, physical appearance, behavioral, molecular
What are RESTRICTION enzymes and what makes them special?
Discovered in bacteria

Destroy bacteriophage DNA and DNA picked up in transformation in bacterial cells (can order to specificity--catalogs)

Cannot digest (host) DNA because of methylated cytosines

Recognize short, specific nucleotide sequence
What recoginition sequnces?
"Symmetrical" sequences 4-8 necleotides running in opposite directions
What is a palindrome sequence?
A sequence that reads the same forward and backward.

GAATTC on one strand and CTTAAG
CTTAAG GAACCT

Restriction enzymes cut between the same adjacent nucleotides on both strands
What are RESTRICTION fragments?
Double-stranded DNA (that has been cut with a Restriction enzyme) with single-stranded ends ("Sticky ends")
What are the "Sticky ends" used for?
To join DNA from different sources
Are the union of "sticky ends" temporary or permanent?
Temporary when held together by HYDROGEN BONDS

Permanent when DNA ligase is added
What is the outcome of restriction fragments joining together?
A DNA molecule carrying a new combination of genes
What is gel electrophoresis?
This method separates molecules based on size and electrical charge

Used to separate restriction fragments

Isolate and purify individual fragments

Band patterns used in DNA fingerprinting
Vectors can do what?
Carry new DNA to desired cell
What is special about a shuttle vector?
It can move cloned DNA among several different species
What can be used as vectors?
Pasmids and viruses (recombined DNA molecules are useful only if they can be made to replicate)
What are gene libraries?
Gene libraries are made of pieces of an entire genome stored in plasmids or phages
cDNA (complimentary DNA) is made from mRNA by?
Reverse transcriptase
What are some ways in which DNA can be inserted into a cell?
Transformation, Electroporation (with electric pulsation), protoplast fusion, microinjection, gene gun
What does PCR (Polymerase Chain Reaction) do?
Amplifies DNA

Extremely small samples of DNA can be multiplied to high concentration
What is PCR used for?
Clone DNA for recombination

Amplify DNA to detectable levels

Sequence DNA

Diagnose genetic disease

Detect pathogens
What is unique about RFLP Analysis (Restriction Fragment Length Polymorphism)?
Each person has a unique arrary of RFLPs--"genetic fingerprint"

Forensic use: about 1 in a million chance two people will have matching DNA fingerprints for the few regions tested
What are subunit/piggyback vaccines?
An application of genetic engineering are nonpathogenic viruses carrying genes for pathogen's antigens as vaccines
What is genetic screening?
Application of genetic engineering use to diagnose genetic disorders
What is gene therapy?
Application of genetic engineering to replace defective or missing genes
What is Antisense RNA?
Application of genetic engineering. Complementary to normal RNA. Blocks mRNA from directing protein synthesis
What are DNA probes?
Application of genetic engineering. Used to detect and identify pathogens in food and patients