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347 Cards in this Set
- Front
- Back
What is evolution? |
-change that is heritable across generations - it happens in populations not individually
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Dobzhansky: |
- Ukranian - Biological species concept |
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What is microevolution and on what level does it occur? |
- allele frequencies changing - occurs on the population level |
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What is macroevolution and on what level does it occur? |
- how species form - occurs on the species level |
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What do all evolving species have (3)? |
- populations - variation - hereditary similarity |
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What are the four elements of evolution by Natural Selection? |
- competition - variation - heritability - irrigation |
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What does RNA splicing do? |
- creates multiple proteins from a single gene |
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What are the 3 types of noncoding regions? |
- mobile genetic elements - RNA genes - Pseudogenes |
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Georges Louis Buffon (2): |
- species arise as distinct entities - diverse environments give rise to new varieties |
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Georges Cuvier: |
- Extinction |
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James Hutton: |
- The earth transformed gradually |
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William Smith: |
- 1st geological map |
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Jean Baptiste Lamark (3): |
- species evolve thru natural process - species are constantly generated - adaptation occurs thru inheritance of acquired characteristics |
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Ways we know whales are mammals (5): |
- produce milk - placental birth - hair - mammary glands - 3 middle ear bones |
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What are synapamorphies? |
- Similarities b/w mammals |
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What can be viewed as a series of bifurcations in a phylogenetic tree? |
- Evolution
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Thomas Malthus (2): |
- essay on principle of populations 1798 - populations reproduce exponentially |
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What did Thomas Malthus say about the rate of reproduction? |
- natural populations have a large capacity to reproduce and if left unchecked will reproduce at a rapid rate |
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What is the fate of duplicate genes (3)? |
- retain original function and provide additional copy of locus - accumulate point mutations and become functionless pseudogenes - gain a new function thru mutation and selection |
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Neofunctionalization: |
- gaining a new function thru mutation and selection |
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What is a point mutation? |
- Base pair substitutions in DNA sequences |
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What causes a point mutation? |
- chance errors during DNA synthesis or repair of damaged DNA |
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What is the outcome of a point mutation? |
- creates new alleles |
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What is a chromosome inversion? |
- flipping of chromosome segment, gene order altered on chromosome |
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What causes a chromosome inversion? |
- breaks in DNA due to radiation |
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What is the outcome of a chromosome inversion? |
- alleles on inversion side are "locked together" in a unit |
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What is gene duplication? |
- duplication of a short stretch of DNA creating an additional copy of a gene |
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What causes gene duplication? |
- unequal crossing over in meiosis |
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What is the outcome of gene duplication? |
- extra gene is free to mutate and perhaps gain a new function |
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What is polyploidity? |
- addition of a complete set of chromosomes |
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What causes polyploidity? |
- errors in meiosis, (mitosis in plants) |
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What is the outcome of polyploidity? |
- can create new species |
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Are germline mutations heritable? |
YES! |
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What is the mutation rate in human males compared to females? |
- on the order of 10x |
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How many fertilized eggs are abnormal? How many spontaneously terminate? |
6% abnormal 5.5% terminate spontaneously |
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Sir Ronald A Fischer (2): |
- father or modern synthesis - spoke about mutational effects |
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What is the fuel for evolution by Natural selection? |
- mutations of small effect |
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What is the mutation rate subject to? |
- evolutionary modification |
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What are the majority of mutations? |
- deleterious |
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What 3 mechanisms generate variation? |
- recombination - independent assortment - meiosis |
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Polymorphisms: |
- can produce differences in phenotype
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What are quantitative trains influenced by and what do they generate? |
- influenced by multiple genes - generate a normal distribution
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What type of individual carries 2 alleles at every locus? |
- a diploid individual |
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Population Genetics: |
- study of distribution of alleles in population - causes allele frequency changes |
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Mechanisms of evolution: |
- forces that change allele frequencies
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Where is sampling error highest? |
- small populations
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What does genetic drift reduce? |
- heterozygosity |
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Monozygotic: |
- identical twins
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Dizygotic: |
- fraternal twins |
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T.H. Morgan: |
- founder of drosophila genetics |
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R. Goldschmidt: |
- theory of "hopeful monsters" |
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Ne or Na (2): |
- effective population size - total # of active breeding adults in a population |
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Sewall Wright (2): |
- effective population size - F statistics |
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Is natural selection the same as evolution? |
NO! |
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What is natural selection: |
- variation in average reproductive success among different phenotypes |
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When can Natural Selection cause evolution? |
- When differences among phenotypes is partly genetic |
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What is an example of heterozygote advantage? |
- sickle cell heterozygote has advantage in areas with maleria |
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What is fitness? |
- reproductive success of an individual with a particular phenotype |
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What are the 3 components of fitness? |
- fecundity - mating success - survival to reproductive age |
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Relative fitness: |
- fitness of genotype compared to others |
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Alleles that lower fitness have what type of selection? |
- negative selection |
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Alleles that increase fitness have what type of selection? |
- positive selection |
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When does selection occur? |
- When genotypes differ in fitness |
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What does population size influence (2): |
- power of drift and selection |
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What does balancing selection maintain? |
- multiple alleles in populations |
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What is migration (gene flow): |
- movement of individuals or gametes among populations |
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What is the result of migration (gene flow): |
- decreases variation between population |
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What are direct measures to measure migration? |
- mark and recapture |
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What are indirect measures to measure migration? |
- molecular market |
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Continent Island Model (2): |
- 1 way movement from large continent to small island - movement random among groups of small populations |
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Stepping stone model: |
- each population receives migrants from neighboring populations |
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What is the effect of alleles from an island on those of a continent? |
- negligable |
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What is the affect of alleles from a continent to those of an island? |
- continent represents a large fraction of island alleles |
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Hi: |
- heterozygosity of an individual |
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Hs: |
- heterozygosity of a subpopulation
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Ht: |
- heterozygosity in a total population |
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What is inbreeding depression? |
- As inbreeding coefficient (F) increases, fitness decreases |
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Rare deleterious alleles are likely to combine...: |
- heterozygotes |
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What does inbreeding decrease? |
- % of homozygous loci identical for descent |
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What is our example of the extraterrestrial origin of life? |
- Panspermia |
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Darwins idea of evolution required what? |
- an old earth |
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Who disputed Darwins idea of an old earth? |
- Lord Kelvin |
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What did Lord Kelvin propose? |
- earth is no more than 20 myo based on the temperature of rocks - he was WRONG
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How old is the earth? |
- approx 4.6 BYO |
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Charles Doolittle Walcott: |
- Burgess Shale 1090 |
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How old is the Burgess Shale: |
505 MYO |
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Earliest signs of life (2): |
- dates to 3.7 BYA - carbon turned into rocks
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What constitutes most of earths biodiversity? |
- microbes |
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Origin of multicellularity (2): |
- evolved independently in different linneages - extant organisms provide clues about the origin of multicellularity |
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When do the earliest algae fossils date to? |
- 1.6 BYA |
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Eukaryotic Multicellular life ( 2 algaes): |
Red Algae: 1.2 BYA Green Algae: 750 MYA |
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Protozoic Era (2): |
- 2.5 MYA -> 543 MYA - prokaryotic and eukaryotic algae |
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How old are the oldest fossils of multicellular animals? |
- 640 MYO |
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Edicaran Fauna (3): |
- best known precambian animals - soft boddied (no skeleton) - crept/stood on sea floor
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Paleozoic Era: |
- Cambrian Period: 543-500 MYA |
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What is the most amazing record of the cambrian period? |
Burgess Shale |
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When did the cambrian explosion start? |
530 MYA |
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How did the cambrian period end? |
Mass extinction
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During the cambrian period, what did diversification do? |
promoted increasing oxygen levels |
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What does earliest animal life resemble? |
sponges |
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Oldest terrestrial plant fossils: |
475 MYO - mosses
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When did fungi appear? |
400 MYA |
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First terrestrial vertebrates? |
- tetrapods - 370 MYA |
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What did mammals evolve from? |
Synapsids
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When did mammals diversity? |
- after dinosaurs went extinct - 65 MYA |
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Phenetics: |
- method used to classify based on phenotype - molecular and morphological
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What does homoplasy result from? |
- Convergent evolution
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What was tictaalic (2)? |
- transitional fossil b/w fish and tetrapods - had wrists!! |
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When did feathers evolve? |
- before flight |
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The transition to unique human traits involved (3): |
- bipedality - larger brain size - canine teeth |
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The transition to bipedality involved (3): |
- weight bearing stance - position of the forearm magnum - short, stiff toes |
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What evolved first - bipedality or large brain? |
bipedality |
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What was the mamalian inner ear made of? |
modified parts of the jaw |
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What is exaptation? |
FEATHERS |
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What is the primary function of mRNA? |
serve as primary transcripts during transcription |
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What does tRNA do? |
transports amino acids and ribosomes
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Whos writing influenced Darwin and Wallace's theories of natural selection? |
Thomas Malthus |
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Who were the 3 founders of the modern synthesis? |
- JBS Haldane - Fischer - Wright |
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What does polyphenic mean? |
- single gene produces multiple phenotypes |
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What methods are used to asses levels of genetic variation (3)? |
- alozyme electrophoresis - RELP - Microsattelite analysis
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Species: |
smallest monophyletic group of common ancestry
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Biological species concept: |
group of individual fully fertile individuals incapable of breeding with other groups |
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Dobzansky and Mayr: |
Biological species concepts |
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Evolutionary species concept: |
species is single linneage w/ its own evolutionary tendencies and historical fate |
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Wiley: |
Evolutionary species concept |
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Phylogenetic species concept: |
cluser of organisms distinct from other such cluters and w/ a parental pattern of ancestry and descent |
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Cracaft: |
Phylogenetic species concept |
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De Quieroz and Donoghue: |
species |
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Recognition species concept: |
most inclusive population of individual biparental organisms that share a common fertilization system |
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Patterson: |
Recognition species concept |
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Cohesion Species Concept: |
most inclusive population of individuals w/ potential for phenotypic cohesion thru intrinsic cohesion mechanisms |
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Templeton: |
Cohesion Species Concept |
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Ecological species concept: |
linneage that occupies an adaptive zone and evolves seperately from all other linneages |
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Van Valen: |
Ecological species concept |
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Angenesis (2): |
- microevolution - evolutionary change w/ in linneages overtime |
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Cladogenesis (2): |
- macroevolution - splitting of linneages overtime
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2 ways to identify species: |
- Biological species concept - Phylogenetic species concept |
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What are the 2 types of isolating barriers? |
- geographic - reproductive |
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Geographic barriers (2): |
- extrinsic properties of landscape that prevent gene flow - allopatry |
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Reproductive barriers (2): |
- features of organisms that prevent interbreeding - sympatry |
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Allopatric speciation (2): |
- geographic isolation - spatial restriction of gene flow
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Vicariance (2): |
- formerly widespread population becomes fragmented - due to formation of mountains, rivers etc |
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Speciation: |
- provides link b/w evolutionary change w/ in linneages and macroevolutionary patterns |
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Prezygotic gene flow barriers (6 examples): |
- mates do not meet - mates meet but don't mate - temporal isolation - habitat isolation - copulation occurs but egg is not fertilized - copulation occurs but gametes are not transferred |
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Premating barriers: |
- timing of reproduction ex - corals |
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Allochronic Speciation: |
isolation due to life cycle timing differences |
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Postmating Barriers: |
- genetic incompatibility |
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Genetic incompatibility: |
sperm of one species fails to penetrate and fertilize egg of another species |
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Conspecific: |
w/ in species
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Heterospecific: |
different species |
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Chromosomal sterility example: |
horse and donkey produce sterile mule
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According to Haldane, where is hybrid sterility usually found? |
In the heterogametic sex |
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Bateson-Dobzhansky-Muller incompatibilities: |
Occur when genomes of 2 species are combined in hybrid offspring |
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What provides an opportunity for allopatric speciation? |
islands |
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What does colonization lead to? |
speciation |
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Earnst Mayr (2):
|
Peripatric speciation Genetic Revolution
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Peripatric speciation (2): |
- due to rare dispersal or colonization events - aka "founder effect" speciation
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What do drift and natural selection cause in small populations? |
- rapid divergence from parental population
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What are 2 forms of evidence of speciation? |
- dispersal - colonization
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Genetic Revolution: |
small populations will undergo a loss of genetic diversity by drift and will have it instead by mutation
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Rassenkreis: |
ring species |
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What happens in ring species? |
populations at ends of rings cannot interbreed |
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What is an example of ring species? |
Ensatina Eschscholotzi |
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What do changes in phylogeny lead to? |
Reproductive isolation
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Ecological speciation: |
evolution of reproductive barriers due to adaptation to divergent environments |
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What 2 things happen when geographic barriers arise? |
populations become allopatric new species can arise |
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What does allopolyploidy lead to? |
rapid speciation |
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What is the barcode of life? |
use of DNA sequences as Taxon barcodes |
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Herbert Et al: |
proposed that mtDNA serves as "Barcode marker" for the animal kingdom
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Horizontal gene transfer (3): |
- makes classification difficult - genomes become mixed together - creates WEB LIKE strands |
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Hybridization: |
crosses b/w geneticall differentiated forms |
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Introgression: |
- movement of genes b/w species, mediated by backcrossing |
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Bounded hybrid superiority model: |
- narrow hybrid zone in which hybrids are more fit than parents |
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Corollary: |
hybrids are less fit in parental habitats
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Cruzan and Arnold: |
mosaic model
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Mosaic Model: |
hybrid zones are mosaics due to the adaptation of 2 parental species
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Tension Zones: |
Characterized by significant linkage disquilibria |
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Adaptive Radation: |
evolution of ecological and phenotypic diversity with rapidly multiplying linneage
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Dolph Schluter: |
Adaptive radiation |
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What are adaptive radiations characterized by (3)? |
- ecological opportunity - aquisition of novel adaptive traits - parallel evolution
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Character displacement: |
members of one lineage constrain phenotypic evolution in members of other lineages |
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Polygenic trait: |
influenced by many genetic loci |
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Epistasis |
Interaction b/w alleles |
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Phenotypic plasticity |
Gene interraction w/ envrionment |
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Quantitative: |
means, variances, h2, VA |
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Qualitative: |
p, q |
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Discontinuous traits: |
traits w/ only a few phenotypes fall into discrete classes, phenotype controlled by one or few genes |
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Intermediate Dominance: |
additive gene action |
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phenotypic variances: |
total variance of population comes from genes and environment |
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Genetic variance |
variance due to only genes |
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Calculating total penotypic variances |
VP=VG+VE |
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VP: |
total phenotypic variance in population |
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VG: |
variance due to genetic differences |
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VE: |
variance due to environmental differences |
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Broad sense heritability: |
proportion of phenotypic viariance explained by genetic differences among individuals |
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Narrow sense heritability: (2) |
- prop of phenotypic variance explained by additive genetic variation - causes offspring to resemble parents |
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VA: |
additive gene action |
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VD: |
dominant gene action |
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VI: |
epistatic gene action - 2 genes control a trait
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Broad sense equation: |
VP=VG+VE OR H^2 = VA/VP |
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Narrow Sense equation: |
VG=VA+VD+VI OR H2=VA/VP |
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VP: |
total phenotypic variance in population |
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VG: |
Variance due to envrionmental differences |
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What is the range of heritabilities: |
0-1 |
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How can H2 be measured? |
As the linnear relationship b/w parental and offspring traits |
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Disruptive selection: |
turns into dual directional selection
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How much the population changes depends on: (2) |
- selection differential (s) - heritability (H2) |
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Strong selection: |
only the biggest individuals reproduce |
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Weak selection: |
big and medium individuals reproduce
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to calculate evolutionary repsonse to selection use: |
breeders equation
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Breeders Equation: |
R=h2Xs |
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In breeders equation:H2 |
= heritability |
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In breeders equation: S |
= selection differential |
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In breeders Equation: R |
= response to selection |
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Selection differential: |
difference b/w selected parents and population as a whole |
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Response to selection: |
diff b/w selected offspring and unselected population |
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Phenotypic Plasticity: |
single genotype produces diff. phenotypes depending on environment |
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Richard Wolterec: |
reaction norm |
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What can rapid change lead to? |
Mismatch b/w plastic traits and environment |
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Quantitative trait locus: |
(QTL) - establishing linkage b/w traits and genes |
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Directional selection: |
increases or decreases in the mean of the trait |
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Stabilizing selection: |
favors average values of a trait |
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Eda: |
involved in production of lateral plates in stickleback fish
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Low Eda Allele: |
favored in freshwater populations |
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Promiscuous patterns: |
usually take on new functions after duplication |
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Paralogs: |
homologous genes arise by duplication
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What is often the starting point for novel traits? |
Promiscuous proteins |
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Antagonistic Pleitropy: |
# of cervical vertebrate |
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How many cervical vertebrate do most mammals have? |
seven |
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Convergent evolution: |
independent evolution of similar traits in different lineages - result of similar selection pressures |
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Parallelism: |
convergent evolution arises thru mutation of the same genes
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Deep homology: |
traits in diff lineages arise from same inherited regulatory networks |
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Twofold cost of sex: |
asexual lineages can grow more rapidly than sexual lineages |
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Search-cost: |
males and females must find each other - leads to risk of predation |
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Reduced relatedness: |
sexual reproducing orgaisms pass only 1/2 alleles to offspring
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Red Queen Effect: |
makes sex beneficial |
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Anisogamy: |
results in differential investment in reproduction |
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What limits females in reproductive success? |
Fecundity |
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What limits males in reproductive success? |
limited by # of mates they can obtain |
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Operational sex ratio |
males:females capable of reproducing at a given time |
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Ornaments: |
attractive traits that increase mating success |
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Armaments: |
weaponry used to outcompete other individuals |
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Monogamy |
1 male 1 female |
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Polygany |
Male mates with numerous females |
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Polyandry |
female mates with multiple males |
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High phosphorous in food in case study: |
big daphnia |
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Low phosphorous in food in case study: |
small daphnia |
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What will retard growth of Daphnia? |
P limitation |
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In daphnia, who is more likely to provide parental care? |
females |
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RA Fischer: |
Frequency dependent selection
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Trivers-Willard hypothesis: |
daughters produced under poor conditions sons produced under good contitions |
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Senescence (2) |
- decline in surivival probability - decline in age, specific reproductive rate |
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Antagonistic Pleiotropy theory: |
sensecence occurs bc of pleiotropic effects of genes |
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How can we postpone senesense? |
calorie restriction |
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What do older females benefit from? |
Rearing children and grandchildren
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Standing diversity: |
# of species present in a certain area |
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Turnover rate: |
extinction of some species and their replacement by others
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Alpha: |
origination rate |
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Omega: |
extinction rate |
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Gingerich: |
extinction rate often tracks origination rae |
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What are the 2 causes of mass extinction? |
- drop in the origination rate, increase in the extinction rate
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Biogeography: |
study of geological patterns of diversity |
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Alfred L Wegner: |
Continental drift theory |
|
How can clades become isolated? |
thru variance |
|
How did marsupials evolve? |
thru mix of vicariance and dispersal
|
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Stephen Jay Gould and Niles Elderedge: |
punctuated equilibrium |
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Punctuated Equlibirum: |
All change directly associated w/ cladogenesis |
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Gradual evolution: |
all character change is w/ in linneages |
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Copes Rule: |
evolution tends towards size increase |
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Background Extinction: |
normal rate of extinction |
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Five Mass Extinctions: |
1) Ordovicarian 2) Devonian 3) Permian 4) Triassic 5) Cretaceous |
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Chiculub Meteor: |
Struck earth at extinction event in cretaceous K/T period |
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Holocene: |
present day period |
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What does increasing CO2 lead to? |
warming temperatures acidifying of the ocean |
|
Intimate partnerships: |
how species adapt to each other |
|
Coevolution: |
reciprocal evolutionary change b/w interacting species |
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Positive neutral commensalism: |
one species benefits and the other is not effected
|
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Hotspots: |
selection is strong in both species |
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Coldspots: |
no selection in one or borth species |
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What facilitates learned avoidance? |
Mullerian Mimicry |
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Antagonistic Interactions: |
involve frequency dependent selection that maintains genetic variation
|
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What are mutualisms vulnerable to? |
cheating |
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Endosymbionts: |
mutualistic organisms that live w/in body of another organism |
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What 2 things are derived from free-living bacteria? |
mitochondria and plant plastids |
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What makes up approximately 8% of the human genome? |
endogenous retroviruses |
|
Retrovirus: |
RNA virus that uses reverse transcriptase to become part of its host's DNA |
|
What is an example of a retrovirus? |
HIV |
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What do neurons control? |
behavior |
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How do sponges build sensory cells |
by using proteins |
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Proximate: |
how |
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Ultimate: |
why |
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2 types of selection: |
individual and group |
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What type of selection is more powerful? |
individual |
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Game theory: |
social conditions determine strategies |
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ESS: |
evolutionary stable strategy when adapted by a population of players it cannot be invaded by an alternative strategy |
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Sociality: |
group living |
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Dilution effect: |
safety in numbers - reduces risk of predation on any one individual |
|
Eusociality: |
species have complete division of labor |
|
Haplodiploidity: |
sex is determined by # of copies of each chromosome it receives |
|
Coefficient of relatedness: |
R probability they share identical copies of a particular gene |
|
Altruism: |
inclusive fitness=direct fitness+ indirect fitness |
|
Kin selection |
indirect benefits of helping relatives |
|
W.D. Hamilton |
oxford proffesor redefined fitness |
|
Hamilton's Rule: |
an altruistic allele increases in frequency when rB>C |
|
In hamiltons rule R= |
coefficient of relatedness b/w donor and recipient |
|
In hamiltions rule B= |
benefit to recipient from help |
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In hamiltons rule C= |
Cost to donor for helping |
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Richard Dawkins: |
Green Beard Effect |
|
Green Beard Effect (3): |
- recognisable phenotype - ability to recognize phenotype - preferential treatment to those w/ phenotype |
|
Kin Selection theory: |
will help relatives before non relatives will help close relatives before distant ones |
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Synaptic Plasticity: |
the neural mechanism of learning and memory |
|
Anthromorphism |
human motives or cultural characteristics ascribed to natural phenomena like animal behavior |
|
What can social living influence? |
Brain evolution |
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In what 2 species has tool use evolved? |
Bird and mammals |
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Coalescence: |
process by which the genealogy of any pair of homologous alleles merge in a common ancestor |
|
Maximum parsimony tree: |
simplest explantation |
|
Distance Matrix Tree: |
Clusters taxa based on genetic distances |
|
Maximum likelihood tree: |
Finds most likely tree given specific model of molecular evolution |
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Bayesian Methods tree: |
looks at probability tree is correct given a specific model of molecular evolution |
|
Neighbor Joining: |
Minimizes total length of tree |
|
What is the point of experimental phylogenies? |
To validate methods |
|
David Hill and Colleagues: |
Used T7 Bacteriophage to study experimental phylogenetics |
|
Multiregional Model: |
old world hominins were single species connected by gene flow, multiregional differences were a result of adaptation |
|
Motoo Kumura: |
most evolution at molecular level is neutral b/c of genetic drift |
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Synonymous Substitutions: |
do not change protein |
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Nonsynonymous subsitutions (2): |
faster evolution indicates positive selection slower evolution indicates purifying selection |
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KS: |
# of synonymous substitutions per synonymous site |
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KA: |
# of synonymous subsitutions per replacement site |
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Under neutral evolution: |
KS=KA |
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Under positive selection: |
Ks |
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Under purifying selection |
Ks>KA |
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Micene Apes: |
30 MYA Gave rise to present day apes |
|
When do the oldest fossil primates date to? |
55 MYA |
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Tarsiers (3): |
Carnivorous, nocturnal, from asia |
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Hominoids (6): |
Brachiation, Erect, Flexible arms and shoulders, No tail, 5 molars |
|
Orangs: |
genus orango: fruit eaters, terrestrial |
|
"Old man of the woods" |
Orangs |
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Gorilla (3): |
Small groups (10-20) Polygyny Males almost 2x the size of females |
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Chimpanzee: |
Tool use Puberty 8-10 years Polygamous Very social |
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Bonobo: |
Not voilent Females form hierarchy |
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Earliest stone tools: |
Oldowan tools
|
|
Turkana Boy: |
10-12 years old, 16 MYA, kenya |
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Java Man: |
.75 MYA H. Erectus |
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Peking Man: |
China .5 MYA H. Erectus |
|
Homo Heidelbergensil |
Europe and Africa 700,000-200,000 years ago
|
|
Neanderthals: |
Europe and Asia 300,000 years ago bodies more stout and muscular than todays humans |
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Where is artificial selection evident? |
in crop production resulted in cob size increase in corn |