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543 Cards in this Set

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General Carbohydrate Metabolism
CHO-->Glucose-->Glycolysis-->Acetyl CoA-->TCA-->Oxidative Phosphorylation
General Fatty Acid Metabolism
FAs-->Acetyl CoA-->TCA
-->Oxidative Phosphorylation
General Protein Metabolism
Proteins-->AAs-->TCA--> Oxidative Phosphorylation
Glycolysis
Occurs in Oxygen depletion. Creates less ATP than OXPHOS
FA Usage
Not used by brain. First priority for Muscle. If FFA are very available to muscle, glycolysis decreases.
Keto Acids Usage
First priority for brain. Not used by muscle unless FA unavailable
Glucose Usage
Used most of the time (due to Keto Acid scarcity) in Brain. Used in muscle only if FA and Keto acids are unavailable.
Fuel Storage
Stores(days/months)
Meals (hours)
Blood(minutes)
ATP(seconds)
Fuel storage CHO
CHO-->Glucose-->Glycogen (liver and muscles)
Fuel Storage Proteins
Proteins-->AAs-->muscle (and other proteins)
Fats Storage
Fats-->FAs-->Triglycerides--> Adipose tissue
CHO as Energy Source
Largest portion of dietary calories but one mole glucose yields only 34-36 ATP
Fats as energy source
Most efficient fuel. One mole palmitate yields 129 ATP
Fuel sparing during starvation
Glucose is needed for brain and RBC.
Protein is needed to sustain body function.
Fat storage makes FAs available to sustain.
Protein Sparing
During Prolonged Fast.
First, glycogen used. Then Protein metabolism reaches peak in 12 hours. However, after this point, less protein is metabolized and more FFA are metabolized. Tend to retain stored fat until needed in starvation
Cell Membrane glucose transporters
Glycolysis requires glucose to enter cell membrane through transporters. Insulinm determines availability of transporters at cell plasma membrane.
FA and GLucose Metabolism
Share same endpoint (Acetyl CoA) so if excess FA there will be excess Acetyl CoA and glycolysis will shut down.
Metabolic Syndrome
One or more of:
Type II diabetes
Impaired Glucose tolerance
Insulin resistance

+

Two or more of:
Hypertension
Obesity
Hypertricglyceremia
Low HDL
Microalbuminuria

with often cooccuring:
Hyperuricemia
Hypercoagulability
Hyperleptinemia

yields Metabolic Syndrome

leads to Diabetes, HIgh BP, Heart Disease, Stroke, Coagulopathies, Kidney Disease
Quercetin
Flavonoid found in apple skins, berries, red wine, etc.
Helped mice run more by creating more mitochondria.
FRS develops quercetin sports drink.
Drink improves high intensity performance.
Lance armstrong promotes
No difference between placebo and Quercitin.

Market Research is done to find "antidotes" to problems.
Inborn errors of metabolism
Homocysteinuria
Phenylketonuria
Tay-Sachs disease
Maple Syrup Urine disease
Tyrosinemia
Gaucher's Disease
Niemann-Pick disease
Fabry's disease
Glycogen storage diseases
Galactosemia
Hereditary Fructose Intolerance
Metabolic Diseases of Muscle
Acid Maltase Deficiency(Pompe's disease)
Carnitine Deficiency
Carnitine Palmityl Transferase Deficiency
Debraucher Enzyme Deficiency
Lactate Dehydrogenase Deficiency
Myoadenylate Deaminase Deficiency
Mitochondrial Myopathy
Phosphofructokinase Deficiency
Phosphoglycerate Kinase Deficiency
Phosphoglycerate mutase deficiency
phosphorylase deficiency (McArdle's Disease)
Ratios of AMP/ADP/ATP
In liver vs muscle same ADP and AMP but ATP 3.0 in liver and 5.0 in muscle
anemia or ischemia
limits Oxygen delivery necessary for efficient fuel utilization
CHO processed into Glucose
all for circulation
FAs to Ketone Bodies
more easily transported around body (h20 soluble)
Glycerol, lactate, pyruvate
3 carbon intermediate molecule
glycerol is backbone to FA
lactate and pyruvate come from FA metabolism
Ethanol
2 carbon fuel
only used when built into FA
Places TCA cycle occurs
Liver
Adipose
Muscle
Brain
(not RBC)
Places B-oxidation occurs
Liver
Muscle
(not Adipose, Brain, RBC)
Places Ketone Bodies Form
Liver
nowhere else
Places Ketone Bodies Used
Some Adipose
Muscle
Brain (when starved)
(no rbc, no liver, no brain when free glucose)
Place of Lipogenesis
Liver
Some adipose
place of gluconeogenesis
Liver
nowhere else
places of Glycogen metabolism
Liver
Muscle
Some adipose
Brain (sometimes)
(no RBC)
Lactate formed
Muscle during exercise
RBC
(A little in brain, adipose, liver)
B-Oxidation
break up long chain FAs into 2-carbon pieces
ketone bodies are end products of FA metabolism
FAs not H20 soluble and dont transport across body well
Ketone Bodies do
Lipogenesis
make FAs out of excess fuel
Gluconeogenesis
processes glucose partway
produces glucose when a tissue needs it
Glycogen
storage form of CHO
Lactate
last step in glycolysis
not usually used because products of glycolysis are taken into TCA
if theres is low oxygen, lactate increases glycolysis
muscle is primary lacatate formation site because energy demands are high and oxygen is not supplied fast enough
Lipogenesis
make FAs out of excess fuel
Gluconeogenesis
processes glucose partway
produces glucose when a tissue needs it
Glycogen
storage form of CHO
Lactate
last step in glycolysis
not usually used because products of glycolysis are taken into TCA
if theres is low oxygen, lactate increases glycolysis
muscle is primary lacatate formation site because energy demands are high and oxygen is not supplied fast enough
Liver Energy
Uses everything but ketone bodies
Muscle energy
uses fat,ketone bodies, glycogen
RBC energy
uses glucose, processes it into lactate
Glycolysis decreases
as FFA become available
Glucose-6-Phosphate is first step in metabolizing glucose
Amount of G-6-P indicates level of glycolysis
FFA decrease, More G-6-P available
FFA increase, less G-6-P
CHO Pathway
CHO-->glucose--> either metabolism (glycolysis) or glycogen(storage)-->liver and muscles
Proteins Pathway
Proteins-->AAs--> MUscle(and other proteins) (no specific form of protein storage)
Fats Pathway
Fats-->FAs-->Triglycerides--> adipose
CHO Pathway Alternate
CHO-->glucose-->Acetyle CoA--> FAs-->triglycerides-->adipose
Stored fuels
adipose triglycerides>protein>glycogen
Circulating fuels
glucose>triglycerides>FFA
3 Effects FFA on Normal Cell
Decrease number of glucose transporters that come to surface and affect function of glucose transporters
decrease glucose transform to glycogen
decrease glucose metabolism
Kwashiorkor
Starvation
excceded capacity to using AAs via breaking down proteins\body makes use of fat (until no more fat, then make use of proteins)
liver cant produce enough albumin which functions to maintain fluid inside bloodstream
tissues are leaking and fluid collects in body cavities
patient presents with swollen belly and stiff arms/legs
Type II diabetes
Hyperglycemia: impaired glucose tolerance following a glucose load so glucose isnt going where it is supposed to
usually accompanied by insulin resistance
associated with obesity
possible mechanisms:
fewer receptors, dysfunctional receptors, aberrant signaling, fewer or occluded glucose transporters
ketogenic diet
helps epilepsy
Metabolic diseases
mostly autosomal recessive
Homocysteinuria
inability to process homocysteine
builds up in blood stream
promotes clotting
pectus excavatum is a marker
children affected in utero are born with osteoporosis
Phenylketonuria
phenylalanine hydroxylase that takes OH group that puts ring structure on tyrosine doesnt function properly
phenylalanine builds up, neurons function poorly
Tay Sachs Disease
prevalent in jews of eastern european descent
defect in processing glycolipid that is prevalent in brain cells and it builds up
children develop normally then regress and death is inevitable
Mitochondria
outermost membrane is porous
inner membrane is thick and folded (cristae)
holds proton gradient to use as energy
cristae are studded with proteins for oxidative phosphorylation
enzymes for TCA cycle are in matrix
Mitochondrial Myopathies
Cause energy defects
Reproductive Hormones
testosterone
progesterone
estradiol
androgen
prolactin
Growth and Development Hormones
GH
TH
Cortisol
Growth Factors
Prolactin
Homeostatic Hormones
Aldosterone
VAsopressin
Vitamin D
Retinoic Acid (vitamin A)
Energy Production, utilization, storage
insulin
glucagon
epinephrine
cortisol
leptin
RBC and Brain Metabolic Interactions
most fastidious and voracious organ needs constant glucose supply
Heart metabolic needs
FAs, lactate, ketone bodies
Muscle Metabolic Needs
FLEXIBLE
FAs major fuel source at rest
Glucose from glycogen store is used @ earlier stage of exertion then FAs as dominant fuel
Liver metabolic needs
Most flexible
Plays major role in keeping stable blood glucose level
Intestine
digestion/absorption of nutrients
Blood
superhighway for balance/transportation of nutrients
pathway of circulation
pathway
Exocrine Pancreas
Trypsinogen
Chymotrypsinogen
Pancreatic Lipase
Amylase
Endocrine Pancreas
insulin (B cells)
glucagon (a cells)
gastrin (Delta cells)
pancreatic polypeptide (F cells)
islet of langerhans
B cells in core
other cells mixed in mantle
Insulin formation
preproinsulin-->proinsulin--> insulin
C-peptide is secreted with insulin (useful for diagnosis)
interspecies insulin are similar
Insulin formation
preproinsulin is secreted as random coil on membrane associated ribosomes with leader sequence--(assists with membrane transport)
leader sequence is cleaved after membrane transport
resultant proinsulin folds into stable confirmation
disulfide bonds form between alpha and beta chains
connecting sequence connects alpha and beta chains and when cleaved alpha+beta chains+ disulfide bonds become a mature insulin molecule
Insulin formation steps
1. nucleus (produce mRNA for preproinsulin production)
2. granular ER (synthesis of preproinsulin, which is cleaved by microsomal enzymes into proinsulin
3. Transfer vesicles to Golgi
4. Golgi (package, convert proinsulin to insulin)
5. Glucose into mitochondria, influx Ca++
6. Secretory granules of insulin condense and are released
Regulation of insulin step one
1. Glucose transporter 2 (GLUT2) is specific to liver and pancreas
responsible for glucose absorption
senses blood glucose levels
mediates transportation of glucose to B cells
Regulation of insulin step two
increase glucose catabolism/atp synthesis
regulation of insulin step three
close K+ channels/open Ca++ channels
regulation of insulin step 4
Ca++ influx
regulation of insulin step 5
insulin synthesis/secretion
insulin signaling pathways for muscle and adipose tissue
Glucose transporter 4 (GLUT4) located in cytoplasm
translocates to plasma membrane with insulin stimulation
insulin signaling pathways
1. insulin binds to insulin receptor
2. autophosphorylation of tyrosine on B subunits
3. phosphorylation of IRS (insulin receptor substrate)
4. GLUT4 translocates to Plasma membrane
5. Glucose influx
6. glycolysis
7. glycogen synthesis
8. FA synthesis
Insulin effects on liver 1
increase glucose phosphorylation
affects glucokinase
insulin effects on liver 2
increase glycolysis
affects phosphofructokinase-1, pyruvate kinase
insulin effects on liver 3
increased glycogen synthesis
affects glycogen synthase
insulin effects on liver 4
increased FA synthesis
Affects AcetylCoA Carboxylase, ATP Citrate Lyase, Malic Enzymes
Insulin effects on liver 5
decreased gluconeogenesis
affects PEP carboxykinase, F-1,6-Bisphosphatase, Glucose-6-Phosphatase
insulin effects on liver 6
decreased glycogenolysis
affects glycogen phopshorylase
insulin effects on liver 7
increase pentose phosphate pathway
affects G-6-P dehydrogenase
insulin effects on adipose 1
increased glucose uptake
affects glucose carrier
insulin effects on adipose 2
increased glycolysis
affects phosphofructokinase-1
insulin effects on adipose 3
increased pentose phosphate pathway
affects Glucose-6-Phosphate Dehydrogenase
insulin effects on adipose 4
Increased Pyruvate Oxidation
affects pyruvate dehydrogenase
insulin effects on adipose 5
increased triglyceride utilization
affects lipoprotein lipase
insulin effects on adipose 6
increased triglyceride synthesis
affects glycero-3-phosphate acyl transferase
insulin effects on adipose 7
decreased lipolysis
affects hormone sensitive lipase
insulin effects on skeletal muscle
increased glucose uptake
affects glucose carrier
insulin effects on skeletal muscle
increased glycolysis
affects phosphofructokinase-1
insulin effects on skeletal muscle
increased glycogen synthesis
affects glycogen synthase
insulin effects on skeletal muscle
decreased glycogenolysis
affects glycogen phosphorylase
insulin effects on skeletal muscle
increased protein synthesis
affects translation initiation complex

Biochemical affects of insulin
increased cell permeability to glucose (muscle and adipose)
increased glycolysis
increased glycogen synthesis
increased triacylglycerol synthesis
decreased gluconeogenesis
decreased lipolysis
decreased protein degradation
increased protein, DNA, RNA synthesis
Physiological affects of insulin
signals fed state
decreased blood glucose level
increased fuel storage
increased cell growth and differentiation
Glucagon
synthesized in alpha cells in pancreas
preproglucagon-->proglucagon--> glucagon
single chain 29 polypeptides
secretion is inhibited by glucose and insulin
increased secretion stimulated by: AAs, catecholamines, glucocorticoids, nervous system
receptor mediated activation of PKA
1 molecule glucagon-->
~20 G-Proteins-->
~100 cAMP-->
~100-1000 phosphorylations-->
net effect~10^5, 10^6
Glucagon effects on blood glucose levels
glucose decreased, then glucagon increases, cAMP increases, PKA increases

increased PKA leads to increased phosphorylase--> increased glycogenolysis--> increased glucose

increased PKA leads to decreased glycogen synthase--> decreased glycogen synthesis --> increased glucose

increased PKA leads to decreased pyruvate kinase--> increased gluconeogensis--> increased glucose

increased PKA leads to decreased PFK2, increased F2,6BPase--> decreased F2,6BP--> decreased glycolysis--> increased glucose
glucagon increases
increases glucagon/glucagon receptor--> increased cAMP--> increased PKA--> increased phosphorylation-->decreased glycogen synthase--> decreased glycogen synthesis -->increased glycogen phosphorylase--> increase glycogen degradation--> increased glucose
decreased glycolysis
affects
glucokinase (induction/repression)
PFK1 (other)
Pyruvate Kinase (induction/repression)
Increased gluconeogenesis
affects
PEP carboxylase (induction/repression)
Fructose 1,6 bisphosphatase (induction/repression, other)
glucose-6-phosphatase (induction/repression)
decreased glycogen synthesis
affects glycogen synthase (phosphorylation)
increased glycogenolysis
affects glycogen phosphorylase (phosphorylation)
decreased FA synthesis
affects AcetylCoA carboxylase (induction/repression) (phosphorylation)
increased FA oxidation
affects carnitine palmityl transferase-1 (induction/repression)
High CHO meal
increased insulin, decreased glucagon

Fructose-6-P --> Fructose 2,6-P phosphorylated by PFK2
Fasting
decreased insulin, increased glucagon

fructose 2,6-p-->Fructose-6-P dephosphorylated byF-2,6BPase
Glucose metabolism
Glucose--> Fructose-6-Phosphate

fructose-6-phosphate + PFK1(from F2,6BP)--> Fructose 1,6 BP--> 2 pyruvates

Fructose 1,6 Bisphosphate +F-1,6-BPase(from F 2,6BP)--> Fructose-6-Phosphate
type I diabetes
childhood, thin, decreased insulin, increased glucagon, increased gluconeogenesis, increased blood glucose

insulin is remedy
10% cases
Type II diabetes
adolescence, obese, 90% cases

insulin receptor downregulation
glucagon is similar
nutrient usage is down
increase in blood glucose/cholesterol/FA

treat with exercise and dietary modifications
catecholamines neurotransmitter
DOPA
dopamine
catecholamines hormone
Norepinephrine (transmitter)
Epinephrine
tyrosine anabolism
tyrosine + tyrosine hydroxylase (rate lmiting) --> DOPA + DOPA decarboxylase--> Dopamine + Dopamine hydroxylase--> Norepinephrine + Norepinephrine n-methyltransferase--> Epinephrine
synthesis in adrenal medulla
physical exertion/psychological stress/cold---> anterior pituitary

hypothalamus--> anterior pituitary (catecholamine releasing)--> adrenal medulla
signal transduction of B2 receptors
identical to glucagon receptor
Activate adenylate cyclase--> increas in cAMP--> activate PKA
catecholamines
slows down gut
speeds up heart
increase sweating
mobilize stores of energy
epinephrine effect on liver
Increase EPI--> adrenergic receptor--> increase cAMP--> increase in PKA-->

increase gluconeogenesis
decrease glycolysis
increased glycogenolysis
decrease glycogenesis

-->

increase blood glucose

opposite effect of epi on heart muscle vs liver
heart
heart
effect of epi on adipose
increase lipolysis
hormone sensitive lipase
effect of epi on adipose
decreased triglyceride utilization
lipoprotein lipase
effect of epi on liver
decreased glycolysis
phosphofructokinase-1
effect of epi on liver
increased gluconeogenesis
fructose-1,6-bisphosphatase
effect of epi on liver
decreased glycogen synthesis
glycogen synthase
effect of epi on liver
increased glycogenolysis
glycogen phosphorylase
effect of epi on liver
decreased FA synthesis
lipoprotein lipase
effect of epi on heart
increased glycolysis
phosphofructokinase-1
effect of epi on heart
decreased glycogen synthesis
glycogen synthase
effect of epi on heart
increased glycogenolysis
glycogen phosphorylase
effect of epi on heart
increased triglyceride utilization
lipoprotein lipase
cortisol/glucocorticoids
chronic stress--> corticotropin releasing factor (CTRF) from hypothalamus--> ACTH (adrenocorticotropic hormone) from anterior pituitary gland--> cortisol and glucocorticoids (from adrenal cortex)--> glucocorticoid receptor--> gene expression -->long term--> increased lipolysis, increased protein degradation, increased gluconeogenesis
Cortisol/Glucocorticoids Effects Adipose
Increase Lipolysis
affects hormone sensitive lipase
Cortisol/Glucocorticoids Effects muscle
Increase protein degradation
Cortisol/Glucocorticoids Effects liver
increase glycogen synthesis, increased gluconeogenesis
affects glycogen synthase
enzymes in amino acid metabolism
PEP carboxykinase
Low Blood Glucose Cascade
LBG-->Pancreas (A cells)--> glucagon

LBG-->Hypothalmic regulatory center-->ANS-->norepi
ANS--> adrenal medulla--> EPI

LBG-->hypothalmic regulatory center-->pituitary-->ACTH--> Adrenal cortex--> cortisol
Leptin
16kDa peptide hormone from adipocyte. amount proportional to bodyfat

+ leptin=when need tolose weight
- leptin=when need to gain weight

function to decrease food intake (satiety) and increase energy expenditure (metabolism)
Db (leptin receptor)
membrane protein enriched in hypothalamus. Coded for by Db gene (diabetes gene). Without this gene, no receptors, and become fat
parabiosis
circulatory systems of two mice joined together

Ob with normal-->lose weight
Db with normal--> normal lose wt
Ob with Db--> Ob lose wt
leptin therapy
used with people with leptin deficiency. no effect in those without deficiency
orexigenic
appetite stimulating
NPY producing
AgRP producing

GHRELIN (stomach)
Anorexigenic
Appetite suppressing
POMC producing
(a-MSH)

PYY intestine
CCK intestine
Leptin adipose
Insulin pancreas
NPY
neuropeptide Y
AgRP
Agouti-related peptide
POMC
propriomelanocortin
a-MSH
alpha melanocyte stimulating hormone
Vitamin D and Vitamin A
can penetrate cell membrane and act on receptor in nucleus
Cortisol
can penetrate cell membrane
B-oxidation
FAs precursors to acetyl coA and used to produce ketone bodies
zymogens
prevent digestion of pancreas itself
pancreatic enzymes
trypsinogen, chymotrypsinogen, pancreatic lipase, amylase
Dela cells
create gastrin and somatostatin
F cells
pancreatic polypeptides and inhibits somatostatin
insulin
signal peptide (lead strand) removed by signal peptidase
procine or bovine insulin
used in humans
Glucose
directly signals beta cells to release insulin
GLUT2
found in B cells, liver
senses blood glucose levels
enhances glucose influx
causes increased glycolysis and ATP synthesis
increased ATP closes K+ channels, K+ no longer flows into cell
indirectly opens CA++ channel
causes direct release of insulin (microfilaments contract in response to CA++ and will release vesicles of insulin into blood stream
CA++ binds to calmodulin--> transcription regulation of insulin through calcium response element binding protein

CREB + Ca++ has bound insulin gene promoter enabling transcription of insulin gene for next round of secretion
Tetramer GLUT2
four subunits (2 alpha, 2 beta
transciption of these subunits controlled by one promoter (so 1:1 ratio)

a-subunits extracellular and bind insulin
B subunits cross membrane
-c-terminus is in cytosol and equipped with tyrosine kinase activty
insulin binds receptor--> autophosphorylation of c-terminal B subunits--> phosphorylation of IRS--> glucose transporter recruited to plasma membrane
GLUT4
found in muscle and adipose tissue
normally located in cytosol
translocates to cell membrane with insulin stimulation
causes-glucose influx
catabolism
muscle glycogen made in muscle, FAs in adipocytes, stored as triacylglycerol
glucagon
inhibited by glucose/insulin
stimulated by AAs and their derivatives (arginine, alanine, GABA, catecholamines, glucocorticoids, GI hormones, increased FFA, nervous system control
carried to target tissue through bloodstream

G-protein coupled receptor

stimulation--> G-protein activation-->activate adenylate cyclase-->cAMP + PKA--> protein phosphorylation

PKA has catalytic and regulatory domains

cAMP binds to and removes regulatory domains
GPCR
G-protein coupled receptor uses GTP to make G-protein release GDP and bind a GTP

adenylate cyclase uses ATP to generate cAMP

requires 4 cAMP to fill regulatory domains of PKA because there are 2 domains with 2 binding sites each

phosphodiesterase turns cAMP into AMP to reduce cAMP concentration

-without cAMP, the regulatory domain of PKA will bind the catalytic domain to stop the reaction
strength of the signal depends on how many glucagon bind receptors and how high cAMP concentration gets
glycolysis
uses glucose to generate pyruvate and ATP (regulated by Fructose-2,6-Bisphosphate (f-2,6-BP) which activates PFK-1 and inhibits Fructose 1,6-Bisphosphatase (F-1,6-BPase) thereby inhibiting the reverse process
PFK-2
increases F-2,6-BP
F-2,6-BPase
decrease F-2,6-BP
glucagon
leads to phosphorylation, activates F-2,6-BPase
insulin
leads to dephosphorylation, activates PFK-2, PFK-1
GLUT1 and GLUT 3
RBC and Brain, high affinity, low capacity
GLUT 2
liver, pancreas, low affinity, high capacity
GLUT4
adipose and muscle (only if insulin is present)
increase glucose levels leads to glycosylation
-DNA, RNA, etc. glycosylation can modify transcription and translation of proteins
increased glucose all the time can be toxic
by having ttransporters, glucose is taken into cell in a way that is not toxic
Catecholamine synthesis
Tyrosine +tyrosine hydroxylase--> DOPA+dopamine decarboxylase (removes carboxyl group in form of CO2)--> Dopamine + domanine hydroxylase (with Vit C as a cofactor adds OH group)--> Norepinephrine +n-methyltransferase (adds methyl to NH2)--> epinephrine
catecholamines
work like glucagon but faster
in heart increases F-2,6-BP
in liver Decreases F-2,6-BP (want gluconeogenesis in liver)
stress pathway
stress-->hypothalamus--> CRF--> anterior pituitary--> ACTH--> adrenal cortex--> cortisol/glucocorticoids-->

lipolysis, gluconeogenesis, protein degradation
leptin
deletion of OB gene leads to obesity
Db knockout grows bigger than Ob knockout
choleocystikinin
released from small intestine during eating to promote sense of fullness and releasing of bile and digestive enzymes
ATP Phosphate bonds
gamma = high energy
B=less high
a=never used
number of mitochondria
depends on energy needs
~50% of cytoplasm of cardiac cells occupied by mitochondria
mature RBC has no mitochondria
mitochondria
outer permeable membrane
intermembrane space contains cytoplasm
inner membrane space is not permeable (including protons)
inner membrane folded into cristae (surface area)
inner membrane compartment called matrix
mitochondrial matrix
contains
TCA cycle enzymes
B oxidation
ATP synthase/ATP
ETC
Mitochondrial DNA
B oxidation
makes 2-carbon Acetyl CoA
Complex
group of functional units (protein)
electron transport systems
complexI-->coQ-->complexIII-->complexIV

complexII-->coQ-->complexIII-->complexIV

I and II merge through coQ
proton pump efficiency
10 protons pumped to intermembrane space when begin at complex I

6 when begin at complex II
COmplex I
NADH + H+ --> NAD+ (nadh is reducing equivalent)
Complex II
succinate-->fumarate

(TCA cycle has 8 steps/enzymes, but the only substrate on membrane of TCA cycle is succinate dehydrogenase) Complex II is not transmembrane
protons pumped
complex I-->4
complex II-->0
complex III-->2
Complex IV--> 4
complex I
>40 subunits
MW=1MDa
1 FMN (similar to FAD, extracts 2H from NADH to give to CoQ)
8 Fe-S clusters (accept e- from NADH), donate e- to Fe-S and then CoQ
Fe serves as a transport of electrons
Gaps b/t subunits form channel for proton pumping

alternate name (NADH dehydrogenase)

inactivated by rotenone, riboflavin deficiency
complex II
alt name: succinate dehydrogenase

has FAD and Fe-S

succinate donates e- to CoQ

inactivated by malonate
complex III
CoQ/CoEnzymeQ/Ubiquinone
-has CoQ
-NADH dehydrogenase donates electrons to bc1 complex
inactivated by generation of free radicals, doxorubicin

cytochrome bc1 complex
-ubiquinone-cytochrome c oxidoreductase
has Fe-S, Hemes (b562, c-1)

inactivated by antimysin, demerol, Fe deficiency

cytochrom c has Heme C

bc1complex donates e- to cytochrome oxidase
inactivated by Fe deficiency
Complex IV
cytochrome oxidase
complex IV
cytochrome AA3

has Heme-a

cytochrome c-->O2

inactivated by carbon monoxide, cyanide, ischemia, Fe and Cu deficiency (leads to Fe deficiency)

Carbon monoxide (binds to heme, blocks O2)
Heme
Fe molecule in center
cyanide
binds to heme Fe in complex IV prevents O2 from being used as a transporter and binding to heme
general cycle
AH2 (substrate) oxidized-->A + NAD+--> NADH

Fp(flavoprotein) +NADH--> FpH2 and NAD+

FpH2 + 2 Fe3+--> Fp + 2 Fe2+

2Fe2+ + 1/2 O2--> H20


1. reduced fuel passes electron to coenzyme
2. the electrons are passed from the coenzyme to a flavoprotein in a complex
3. the flavoprotein passes them to an iron containing cytochrome group
4. the last cytochrome passes them to oxygen, reducing it to water
electrochemical potential
cytosolic side has + charge (acidic), matrix side is - charge (basic) because of proton pump

driving force of ATP synthesis
a. electro-membrane potential
b. chemical-involves proton particles
c. electrochemical potential
ATP synthase
a protein complex
H+ channel
-Fo (C-subunits)

Catalytic Domain
-F1(a,b,a,b,y,d)

use the electrochemical potential to synthesize ATP

C-complex embeds in membrane
-flow of protons turns complex
-each c-subunit moves 30 degrees/proton. need 12H+ to turn 360 degrees

Y turns 360, 3 ATP synthesized

pool of protons inside the matrix are used for pumping
oxidative phosphorylation
complex I- FMN is main acceptor
complex II- FAD is main acceptor
mitochondrial inner membrane transporters
Adenosine Nucleotide Translocase (antiporter)
-ADP--> matrix
-ATP--> intermembrane space
charge difference gives process movement (electrochemical potential)

ATP synthase (uniport)
-H+--> matrix

Phosphate translocase
(symporter)
H2PO4--> matrix
H+--> matrix

concentration gives movement (chemical potential)
mitochondria ATP synthesis
oxidation of NADH or succinate
-electron passed to O2 through ETC to form H20
-formation of electrochemical potential
-potential used by ATP synthase to synthesize ATP
-oxidative phosphorylation
-oxidation and ATP synthesis
different efficiencies of electron transfer chains
complex I extracts elctrons from NADH and transfers them to complex III (and pumps 4H+)

complex II extracts electrons from succinate and passes them to complex III (no pump H+)

Electron transfer from complex III to complex IV pumps 2H+

Electron transfer from complex IV to O2 (pumps 4H+)
ATP synthesized
NADH oxidation pumps 10H+, synthesizes 2.5 ATP

FADH2 oxidation pumps 6H+ and synthesizes 1.5 ATP
Vitamin B3 derivatives
NAD+ (nicotinamide adenine dinucleotide)
NADP+ (nicotinamide adenine dinucleotide phosphate)
Vitamin B3 deficiency
glossitis (swollen tongue, inflamed)
pellagra (diarrhea, dermatitis, dementia)

B3 overdose is flushing
Vitamin B2 derivatives
FMN (flavin mononucleotide)
FAD (flavin adenine dinucleotide)
Vitamin B2 deficiency
cheilosis (inflamed lips, scaling/fissures at corner of mouth, glossitis)
corneal vascularization
ATP synthesis and utilization
Glucose, FAs, AAs--> acetyl CoA--> TCA cycle

FA is more efficient than glucose and proteins (more easily removed 2-carbon groups

Ketone bodies and Ethanol are energy enriched (easy to produce Acetyl CoA)

glucose-->pyruvate-->TCA-->FADH2 NADH-->ATP
creatine phosphate
energy can be stored temporarily as this
Malate-Aspartate shuttle
(antiporter)
two enzymes
-malate dehydrogenase
-aspartate aminotransferase
two transporters
-malate a-ketoglutarate
-glutamate aspartate transporter

H is transferred to oxaloacetate-->Malate which helps move NADH from cytosol into matrix by using a reducing equivalent)

(enzymes catalyze forward and backward reaction)

regenerates NADH
glycerol-3-phosphate shuttle
DHAP (dihydroxyacetone phosphate) + Glycerol-3-Phopshate dehydrogenase--> Glycerol-3-Phosphate

does not regenerate NADH--start at CoQ
ATP in respiratory control
"pulls" demand of O2 forward
oligomycin inhibits ATP synthase
binds to Fo of ATP synthase

blocks proton channel

inhibits atp synthesis

-lower atp, higher adp

etc is enhanced

increased electrochemical potential
ultimate ETS stops

keeps proton gradient intact

slows 02 consumption
uncoupling phosphorylation from electron transport

DNP
DNP (2,4 dinitrophenol) destroys H+ gradient allows continued ADP stimulation of 02 consumption without ATP synthesis

it is a weak acid/hydrophobic

DNP is protonated in the intermembrane space
protonated DNP diffuses into matrix
DNP is deprotonated in matrix
H+ gradient is disrupted
no ATP synthesized
Thermogenin
protein complex like DNP

oxidation of NADH/FADH
formation of H+ gradient
H+ gradient uncoupling by thermogenin
generation of heat
reducing ATP synthesis
ADP
required for ATP synthesis
atp hydrolysis controls ATP synthesis

ADP effects
-enhances oxidative phosphroylation
-increases rate of TCA cycle allosterically
-NADH is required for ATP synthesis
-NAD+ is required for TCA cycle

energy needs which consume NADH allow NAD+ to increase rate of TCA cycle

As energy needs decline, excess NADH slows down TCA cycle

rations of ATP/ADP and NADH/NAD control rate of activity
interlocking regulation
glycolysis
pyruvate oxidation
citric acid cycle
oxidative phosphorylation

all regulated by relative concentrations of
AMP
ADP
ATP
NAD
NADH
calorie restriction/NADH/longevity
CR seems to increase lifespan
during CR, Sirt1 (deacetylase) activity increases
NAD+ serves as Sirt1 activator
increased ratio NAD/NADH
lowers cholesterol, fasting glucose, blood pressure
slows aging, increases longevity


resveratrol
similar effects as CR without CR
muscle work
myosin heads engage with actin at multiple sites
myosin head has an ATP binding domain and is an ATPase
changes in myosin head conformation upon binding ATP, hydrolyzing ATP, or realeasing ADP allows contact with Actin and slide actin filament forward

ATP-releasing Y, B phosphate bonds provide energy
Increase ATP

Increase ADP
body has energy/body needs anergy
1,3 Bisphosphoglycerate
Phosphoenol Pyruvate
have PO4 bonds, high energy, that can be made into ATP

importnat in glycolysis, substrate level phosphorylation in RBC (no mitochondria)
acetyl CoA
all fuel ends up as acetyl CoA
has high energy ester bond
creatine phosphate
phosphate becomes sequestered
after big meal, some ATP is stored as creatine phosphate in muscles

releases more energy than just ATP

ATP lasts for 2 seconds, Creatine PO4 kicks in for 8 seconds, then muscle dips into glycogen

all high energy molecules can interconvert into ATP

also participate in energy requiring reactions
energy carrier molecules
NAD/NADH
NADP/NADPH
FAD/FADH2
oxidative phosphorylation
rxn by which ATP synthesis occurs

most efficient ATP reduction (O2 reduced)
electrochemical gradient
protonmotive force
electron transport chain
atp synthase (Fo/Fi ATPase)
fuels used to produce reducing equivalent and ATp
at substrate level phosphorylation

fuels being oxidized, O2 reduced to H20
BMR
weight in kg x 24
brain's need for glucose is driving force in energy metabolism
liver regulates the concentration of fuels in blood
-disposes of excess fuel from diet
-provides fuels in between meals
-interconverts fuels to glucose
and keto acids so brain has enough fuel
brain
requires supply of fuel and O2
cannot burn fatty acids
uses 20-25% REE
muscle
significant CHO reserves as glycogen
utilizes glucose or fat fuels
major reserve of body protein
spares brain fuels during exercuse
RBC
only glucose, lactate
kidney
uses ATP to excrete wastes excretes nonvolatile wastes
excretes excess acid
lungs
excretes volatile wastes (CO2)
coupling energy requiring reactions with energy releasing reactions
endergonic with exergonic

balance required globally in cell or organism
synthetic operations coupled to energy production
reflects sum of individual coupled reactions
compare metabolic situations
fed vs fasted vs starved
type I diabetes
no insulin
type II diabetes
insulin has little effect
Alcoholism
increases NADH
insulin
stimulates glucose to be transported into cell

activates phosphatase which activates pyruvate kinase
activates glycogen synthases
inactivates glycogen phosphorylase
inactivates glycogen phosphorylase kinase
GLUT 4
muscle and adipose
GLUT 2
High Km, low affinity
liver
induces glucokinase through insulin
have to have insulin around before liver will take it in
Fructose 2,6 Bisphosphate
made in response to insulin
activated by PFK1
activates glycolysis (not in any pathways)
glycogen
fasted state
break down liver glycogen send glucose into blood stream

activates protein kinase A
induces gluconeogenic enzymes
F2,6BP synthesis is inhibited (PFK2 is phosphorylated)
cAMP activated protein kinase
is stimulated to inhibit PK
activates gluconeogenic pathway and shuts off glycolysis
PKA phosphorylates GLYCOGEN SYNTHASE and GLYCOGEN PHOSPHORYLASE KINASE but only activates glycogen phosphorylase kinase to avoid a futile cycle
TCA cycle
regulated by high NADH and ATP levels (both turn off this cycle)
Insulin activates pyruvate dehydrogenase (PDH) phosphatase and thereby activates the PDH complex
PDH turns pyruvate into Acetyl CoA turning on the TCA cycle
proteins
insulin makes some AAs go into tissues easier
FA synthesis
glycolysis is going (with lots of insulin)
phosphatase activates Acetyl CoA Carboxylase
Insulin stimulates synthesis and secretion of lipoprotein lipase (LPL)
this breaks down triglycerides into FAs for storage (LPL activated by apoCII)
insulin induces FA synthesis enzymes
-citrate lyase
-AcCoA carboxylase
-FA synthase
insulin also induces NADPH synthesis, malic enzyme and G6PDH
FA breakdown
bring FAs into liver so they can be broken down to make KBs
PKA is important stimulating hormone sensitive lipase (HSL)
PKA inactivates Acetyl CoA carboxylase
Liver
donates NADH to ETC to make energy
HOMEOSTASIS
-carbohydrates
glycolysis/TCA
gluconeogenesis
storage of glycogen for glucose production
-AAs
liver uses all AAs but BCAA
urea cycle to remove extra ammonia
-Lipids
synthesis and secretion of bile acids and salts
beta oxidation
KB production
FA synthesis
VLDL packaging and secretion
HDL packaging and secretion
Uptake of chylo remnants
Uptake of HDL
SYNTHESIS/PROCESSING PRoteins
-Heme
synthesis in liver (and other tissues)
bilirubin concentration
-circulating proteins synthesis
albumin
haptoglobin, ceruloplasm
blood clotting factors
clotting inhibitors
acute phase proteins
-CYP450 system and oxidation reactions
ETOH oxidation
drug oxidation
-storage
vitamins
cholesterol
iron and other metals
-EXCRETION/FILTRATION
drugs after CYP450
bilirubin after conjugation
poisons from gut
DEFENSE
excretion of IgA (against bacteria in gut)
Macrophages (VonKupffer cells) and phagocytose bacteria
Alcohol
increases NADH concentration
-alcohol dehydrogenase and aldehyde dehydrogenase both generate NADH
ETOH+alcoholDH--> acetaldehyde + NADH --> acetate goes into muscle to be used to form Acetyl CoA for the TCA cycle
ACS(Acetyle CoA synthetase) to use acetate for energy
membrane fluidity is altered and can lead to toxic effects in brain
acetaldehyde forms products with other proteins
acetate gives high amounts of acetyl CoA which leads to increased FA synthesis (steatosis in alcoholics)
increases NADH/NAD ration will increase the amount of lactate going to pyruvate (inhibits gluconeogenesis and TCA cycle)
high NAD also inhibts FA B-oxidation
increases glycerophosphate (precursor to TG formation) leads to increase TG in liver

metabolism ETOH generates high NADH/NAD ratio
high NADH/NAD ratio inhibits FA B-oxidation and TCA cycle (FA accumulate)
FA reesterified to TG because high NADH/NAD ratio generates Glycerol-3-P from DHAP
High NADH/NAD ratio inhibits TCA cycle (oxaloacetate goes to malate)
High NADH/NAD ratio shifts OAA toward malate, acetyl CoA goes toward KB formation
cannot do gluconeogensis because pyruvate goes toward lactate because of high NADH/NAD ration (lactic acidemia)

Uric acid competes with other acids (lactic, salicylic, etc) for transport into kidney (break down DNA by acetaldehyde)

gluconeogenic precursor AAs (via pyruvate) not used for GNG because push towards lactate

alanine will go to pyruvate, pyruvate will go to lactate (causes hypoglycemia)
NADH are blocking PDH. so OAA is going toward malate which goes into cytosol and stops gluconeogenesis
Type I db
hormonal (no insulin, lots of glucagon)
type II db
hormonal, lots of insulin, does not work correctly, (no glucagon)
glycolysis
not much glucagon, lots of insulin
glucokinase is inducible (high Km)
PFK1 is active when low ATP, high AMP and high F2,6BP
PFK1 is inactive when high ATP, low AMP, high F 2,6BP
pyruvate kinase is active with insulin and inactive with glucagon
gluconeogenesis
low insulin, high glucagon levels
G-6-Phosphate is inducible with cortisol and cAMP via glucagon
Pyruvate carboxylase is activated by Acetyl CoA
PEP carboxykinase is inducible and activated by cAMP (via glucagon)
FA oxidation
fasted state, increase FA/TG from adipose (via HSL)
malonyl CoA inhibits newly synthesized FA transport into mitochondria via CPTI
mitochondria keeps compartments separated (all synthesis in cytosol)
FA synthesis
fed state, increase FA/TG from digestion, increase ATP, NADPH, Acetyl CoA, citrate (tca)

citrate activates Acetyl CoA carboxylase and is used to make Acetyl CoA

Cytosol - Malonyl CoA inhibits movement of acyl group into mitochondria
TG breakdown
no futile cycle because must make glycerol-3-phosphate from glucose and if there is no glucose there will be no TG synthesis

HSL breaksdown TG into FA to be used for energy. HSL controlled by glucagon (activate) insulin (inhibit)

TG breakdown by LPL to release FA from VLDL and chylomicrons
for storage in adipose or energy in muscle
TG synthesis
TG not synthesized from glycerol + FFA because no glycerol kinase in adipose tissue (most get from glucose)
TG only synthesized from glycerol derived from glucose
TG synthesis happens in liver
glycogen breakdown
glycogen phosphorylase is going to be active when you are breaking glycogen down because of the phosphate group that is on it
it will be inactive when dephosphorylated by a phosphatase
gylcogen phosphorylase will be active when there is low insulin and high glucagon because the body needs energy and breaks down glycogen
glycogen synthesis
glycogen synthase is active during synthesis
-dephosphorylated by phosphatase (to activate)
inactivated by PKA
glycogen synthase will be active when insulin is high and glucagon is low because the body has excess energy sources and can store it
urea cycle on or off
protein synthesis or proteolysis
feeds forward because there are a lot of AAs so the body wants to get rid of some of those nitrogens by putting them on Urea

Carbamoyl P synthetase
-CPSI allosterically inactivated by N-Acetyl glutatmate (NAG)
NAG not found in cycles only used to activate first step in urea cycle (NAG synthesized from glutamate and activated by arginine)
urea cycle enzymes are under induction or repression of synthesis
(high protein diet vs. prolonged fasting)
biotin
carboxylation reactions
pyruvate carboxylase (pyruvate-->OAA)
acetyl CoA carboxylase(acetyl coA-->malonyl)
propionylCoA carboxylase
post-translational carboxylases
B1 Thiamine
TPP
cofactor in oxidative decarboxylation of alpha-keto acids
-pyruvate dehydrogenase
-alpha-ketoglutarate dehydrogenase
-BCAA dehydrogenase

formation or degradation of alpha-ketols by transketolase
B2 Riboflavin
redox/oxidation reaction
used in TCA cycle and Beta-oxidation
biologically active as FMN and FAD
B3 Niacin
NAD/NADP are co-enzymes in redox reactions. accepts a hydride ion
B5 pantothenic acid
CoA
transfers acyl groups via a thiol group as activated thiol esters (CoA)
B6 pyroxidine
PLP
decarboxylation
transamination
synthesis (heme): glycine (AA) is decarboxylated
AA decarboxylation to form neurotransmitters (GABA, 5HT, histamine)
transamination reactions
a step in tryptophan degradation
B12 cobalamin
nucleotide synthesis
transfers methyl group to form methionine
involved in pyrimidine nucleotide synthesis
methylmalonyl coA-->succinyl CoA (methylmalonyl coA mutase)
carbons from val, ile, thr, thymine, last 3C of odd chain FA-->succinyl CoA
odd chain FA metabolism and BCAA metabolism
folic acid
receives 1C fragments from donors(ser, gly, his, etc( and transfers to intermediates in synthesis of AA, purines, thymidine
one carbon metabolism
C(ascorbic acid)
antioxidant, free radical scavenger in aqueous environment
hydroxylation of prolyl residues on collagen by prolyl hydroxylase in preparation for cross-linking
d (sterols)
hormone like functions to maintain CA2+ levels
increases uptake Ca++ by intestine
minimizes loss Ca++ by kidney
stimulates bone resorption if necessary
E (alpha-tocopherol)
antioxidant
lipophilic free radical scavenger
protects against lipid peroxidation
K
modify clotting factors II, VII, IX, X
carboxylation of glutamate to gamma-carboxy-glutamate
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
Lysosomal storage disease
1/12000
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
Lysosomal storage disease
1/12000
Peroxisomal disorder
1/30000
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
Peroxisomal disorder
1/30000
Lysosomal storage disease
1/12000
respiratory chain-based mitochondrial disease
1/33000
respiratory chain-based mitochondrial disease
1/33000
Peroxisomal disorder
1/30000
glycogen storage disease
1/43000
respiratory chain-based mitochondrial disease
1/33000
glycogen storage disease
1/43000
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
glycogen storage disease
1/43000
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
Lysosomal storage disease
1/12000
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
glycogen storage disease 2
(Pompe)
LSD
glycogen storage disease 2
(Pompe)
LSD
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
Peroxisomal disorder
1/30000
Lysosomal storage disease
1/12000
glycogen storage disease 2
(Pompe)
LSD
respiratory chain-based mitochondrial disease
1/33000
Peroxisomal disorder
1/30000
glycogen storage disease
1/43000
respiratory chain-based mitochondrial disease
1/33000
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
inborn errors of metabolism
rare genetic diseases
blockage in metabolic pathway
lower activity/complete deficiency of specific enzyme
substrate will accumulate, product will be low
substrate will then take other pathways
accumulate in tissues and organs and become toxic and harmful

pattern of inheritance
-can be young/infant onset or adult
higher severity with younger onset (dtect disease with pheotypic expression)
milder with adult onset
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
glycogen storage disease
1/43000
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
Lysosomal storage disease
1/12000
Lysosomal storage disease
1/12000
AA diseases (PKU) organic acids, galactosemia, urea cycle disease
most common IBM
1/4200
PKU is most common
glycogen storage disease 2
(Pompe)
LSD
Lysosomal storage disease
1/12000
Lysosomal storage disease
1/12000
Peroxisomal disorder
1/30000
Lysosomal storage disease
1/12000
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
Peroxisomal disorder
1/30000
Lysosomal storage disease
1/12000
Peroxisomal disorder
1/30000
Peroxisomal disorder
1/30000
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
respiratory chain-based mitochondrial disease
1/33000
Peroxisomal disorder
1/30000
Peroxisomal disorder
1/30000
respiratory chain-based mitochondrial disease
1/33000
respiratory chain-based mitochondrial disease
1/33000
respiratory chain-based mitochondrial disease
1/33000
glycogen storage disease 2
(Pompe)
LSD
respiratory chain-based mitochondrial disease
1/33000
glycogen storage disease
1/43000
respiratory chain-based mitochondrial disease
1/33000
glycogen storage disease
1/43000
glycogen storage disease
1/43000
glycogen storage disease
1/43000
glycogen storage disease
1/43000
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
glycogen storage disease
1/43000
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
lysosomes
cellular organelles that recycle macromolecules (proteins, glycoproteins, lipids, phospholipids, sphingolipids)
break down for reuse
~70 enzymes in lysosomes
optimal activity at pH=5
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
lysosomal storage disorders
characteristics
defect can be at particular reaction site of lysosomal enzyme or coenzyme of reaction or posttranslational modification protein or lysosomal transport protein

results in accumulation of substrate in lysosome
more than 5 different LSDs
most autosomal recessive (Hunter and Fabry's are X linked)

onset typically in infancy or early childhood

phenotype-genotype heterogeneity exists
in newborns, phenotypes are fatal and often go unrecognized
(many symptoms, can be misdiagnosed)
milder symptoms may be undiagnosed for years

CNS involvement (neuro disorders, mental disorders)
organomegaly (spleen, liver)
connective tissue
ocular pathology (something wrong with eye nerves)
glycogen storage disease 2
(Pompe)
LSD
glycogen storage disease 2
(Pompe)
LSD
glycogen storage disease 2
(Pompe)
LSD
glycogen storage disease 2
(Pompe)
LSD
glycogen storage disease 2
(Pompe)
LSD
LSD causes
primary (genetic) or secondary (changes cellular processes, secondary biochemical pathways)
glycogen storage disease 2
(Pompe)
LSD
sphingolipidoses
Fabry, Farber, Gaucher, Tay-Sachs, Niemann-Pick, GM2 Gangliosidosis Sandhoff, Krabbe, MLD
Mucopolysaccharidoses
MPSI or Hurler, MPSII or Hunter, MPSIII or Sanfilippo, MPSIV or MOrquio, MPSVI or Maroteaux-Lamy, MPSVII or SLy
other LSDs
glycoproteinoses, neuronal ceroid liposuscinoses, transport defects
mucolipidoses
MLII, MLIII
treatment of LSDs
based on the disease pathway, enzyme to substrate (low vs high) defective lysosomal enzyme is a hydrolase
-protein re-engineering
-bone marrow and stem cell transplantation
-gene therapy
-enzyme replacement therapy (ERT)
enzyme enhancement therapy (chaperones)
substrate reduction therapy
identify secondary biochemical pathways affected by substrate accumulation and try to intervene.
Pompe (GSD II)
due to a missing lysosomal debranching enzyme in lysosome, alpha-glucosidase
results in accumulation of glycogen (cant break down to glucose)
because in lysosome, disease doesnt contribute to hypoglycemia
contributes to skeletal and cardiac muscles and liver
lysosomes normally small, become distended

three forms
-infantile
death by two years
progressive muscle weakness
profound hypotonia
macroglossia (enlarged tongue)
cardiomegaly and cardiac failure
-Late Juve/Adult form
milder than infantile, greater variation in symptom onset age
some glucosidase activty (some debranching enzyme present)
progressive proximal weakness in trunk
exercise intolerance
hypotonia
hepatomegaly
absence of severe cardiac involvement (some slight)
respiratory insufficiency
death usually respiratory failure
sphingolipidoses
LSD where enzyme affected is generally lysosomal hydrolase (degrades sphingolipids)
deficiency of enzyme itself or lack of an enzyme transporter in lysosomal membrane
accumulation of sphingolipids
hallmark symptom is progressive neurodegeneration
autosomal recessive disorder (Fabry's is X linked)
MR is common to many of these diseases

sphingolipids
glycosphingolipid is a type of sphingolipid
-sphingosine backbone with either a glucose or galactose attached

four major classes
-cerebrosides (single glucose/galactose moeity)
glucocerebroside/galactocerebroside
-Globosides
similar to cerebroside, but has 2+ sugar molecules
-Gangliosides
similar to globosides, but has a sialic acid
-Sulfatides
have sulfuric acid attached by an ester to galactocerebroside

sphingosine+FA--> ceramide
phosphate+alcohol--> sphingomyelin

glycosphingolipid must have glucose or galactose
globosides have more than one sugar
galgliosides have sialic acid

ceramide sphingolipids plus FA create ceramide
(add more sugar, get cerebrosides (gluco/galactocerebrosides)

degraded by enzymes
-galactocylceramidase (krabbe disorder if missing)
-glucocylceramidase (gaucher disorder if missing)

Hexosaminidase A or B def. is Tay-Sachs or Sandoff's
Alpha-galactosidase A def. results in Fabry's
Tay Sachs
def. Hexasoaminidase A which catalyzes degradation of gangliosides GM2
gangliosides are synthesized and degraded very rapidly (important in early life and brain development)
accumulation of gangliosides in tissues is harmful and can be fatal
development is normal for first few months, then symptoms appear
-nerve cells become distended with fatty materials
-affects mental function and physical abilties
-Lose all muscle tone

carriers of disease are missing enzyme
presently no treatment (anticonvulsants for seizure control)
Ashkenazi Jews mostly Affects
symptoms (cherry red spots in eyes, blindness, deafness, inability to swallow due to muscle atrophy and paralysis
dementia, seizures,
late age of onset can be 20-30 years (very rare)
normal sounds abruptly startle child
1/27 jews are carriers, 1/3000 jewish babies born with disease
Fabry's
deficiency of alpha-galactosidase enzyme
mutation causes buildup of globosides or ceramide trihexoside (accumulates in eyes, kidneys, nervous tissue, CV system)
X linked lipid storage disease
enzyme replacement therapy approved by FDA is used for Tx
patients die prematurely from strokes, heart disease, renal failure

symptoms
-burning sensation when sweat or exercise
corneal cloudiness in eye
angiokeratomas (raised reddish blemishes on skin of chest and back)
renal failure
Metachromatic Leukodystrophy
MLD
lack of aryl sulfutase A, results in buildup of sulfatides
lipid is important for protection on myelin sheath and what surrounds nerve tissue
kidneys,gallbladder, other organs affects
autosomal recessive
three forms

late infantile
begins 1-2 years old
juvenile
begins 4-12 years old
adult/late stage juvenile
after 14 years

symptoms
issues with muscle tone and movement
walking, ,muscle control, falls, feeding, swallowing difficulties
decreased mental function
behavior issues
nerve functions in general
metachromatic granules
gaucher disease
defect in beta-glucosidase
accumulation of glucocerebroside
-accumulates in macrophages, histologically called Gaucher cells
can causes splenomegaly and hepatomegaly, issues with bone marrow and anemia

three types

type I
most common in general and ashkenazi jewish
bone disease, anemia, splenomegaly

type II disease
infancy, neurological involvement, rapidly lead to early death

type III
spleen, liver, brain problems
patient has longer life


MR
loss of bone density, fractures, bone pain
seizures
gaucher disease
defect in beta-glucosidase
accumulation of glucocerebroside
-accumulates in macrophages, histologically called Gaucher cells
can causes splenomegaly and hepatomegaly, issues with bone marrow and anemia

three types

type I
most common in general and ashkenazi jewish
bone disease, anemia, splenomegaly

type II disease
infancy, neurological involvement, rapidly lead to early death

type III
spleen, liver, brain problems
patient has longer life


MR
loss of bone density, fractures, bone pain
seizures
Neimann Pick disease
accumulation of sphingomyelin in liver, spleen, lung, bone marrow, brain

multi organ involvement causes many different symptoms
enlargement of organs
classic type A variant is a missense mutation that leads to complete deficiency of the sphingomyelinase enzyme

affected cells become enlarged
histologically lipid laden macrophages (sea-blue histiocytes)
age of onset is different

Type I
Type A (first few months after birth)
abdominal area gets larger
cherry red spots in eye
loss of motor skills early in life
type B
milder, occurs later in childhood, adolescence
abdominal swelling, splenomegaly
no brain or nervous system involvement
no loss of motor skills

Type II
type C (handout)
Type D
similar to type c
Neimann Pick disease
accumulation of sphingomyelin in liver, spleen, lung, bone marrow, brain

multi organ involvement causes many different symptoms
enlargement of organs
classic type A variant is a missense mutation that leads to complete deficiency of the sphingomyelinase enzyme

affected cells become enlarged
histologically lipid laden macrophages (sea-blue histiocytes)
age of onset is different

Type I
Type A (first few months after birth)
abdominal area gets larger
cherry red spots in eye
loss of motor skills early in life
type B
milder, occurs later in childhood, adolescence
abdominal swelling, splenomegaly
no brain or nervous system involvement
no loss of motor skills

Type II
type C (handout)
Type D
similar to type c
Sandhoff disease, GM1 gangliosidosis, Krabbe
handout
Sandhoff disease, GM1 gangliosidosis, Krabbe
handout
Mucopolysaccharidoses MPS
MPS I Hurler and Scheie syndromes

hurler-most severe
developmental delays, severe respiratory, do not live beyond ten

scheie: less severe
normal intelligence, less progressive physical problems, normal looking features
can live to decades of age

MPS II Hunter Disease

MPS III-IX

normal degradation of carbohydrate chains of glycosaminoglycans
defective enzyme that is important in the glycosaminoglycan pathway
can be normal intellect to profound MR

symptoms
rough facial features (gargoyle-like), thick lips, enlarged mouth and tongue
dwarfism, abnormal bone size/shape
thickened skin
hepato/splenomegaly

mucopolysaccharides (glycosaminoglycans) are involved in MPS

glucosamine glycans derived from glucose

heparin and dermatan sulfate are derived from glucose
-component of joints, synovial fluid, lubricants, collagen binders, anticoagulant (heparin)

hyaluronic acid
-improves viscosity and elasticity of synovial fluid
tx for osteoarthrities
corrects facial wrinkles/folds

MPS I: Hurler
def. alpha-L-iduronidase
accumulation of dermatan and heparin sulfate
causes tissue and organ dysfunction


broad mouth, square jaw, receding chin
corneal clouding
dwarfism bc joint deformities


MPS II HUnter's syndrome
def. enzyme iduronate sulfatase
still accumulate dermatan/heparin sulfate
Xlinked
no corneal clouding
Mucopolysaccharidoses MPS
MPS I Hurler and Scheie syndromes

hurler-most severe
developmental delays, severe respiratory, do not live beyond ten

scheie: less severe
normal intelligence, less progressive physical problems, normal looking features
can live to decades of age

MPS II Hunter Disease

MPS III-IX

normal degradation of carbohydrate chains of glycosaminoglycans
defective enzyme that is important in the glycosaminoglycan pathway
can be normal intellect to profound MR

symptoms
rough facial features (gargoyle-like), thick lips, enlarged mouth and tongue
dwarfism, abnormal bone size/shape
thickened skin
hepato/splenomegaly

mucopolysaccharides (glycosaminoglycans) are involved in MPS

glucosamine glycans derived from glucose

heparin and dermatan sulfate are derived from glucose
-component of joints, synovial fluid, lubricants, collagen binders, anticoagulant (heparin)

hyaluronic acid
-improves viscosity and elasticity of synovial fluid
tx for osteoarthrities
corrects facial wrinkles/folds

MPS I: Hurler
def. alpha-L-iduronidase
accumulation of dermatan and heparin sulfate
causes tissue and organ dysfunction


broad mouth, square jaw, receding chin
corneal clouding
dwarfism bc joint deformities


MPS II HUnter's syndrome
def. enzyme iduronate sulfatase
still accumulate dermatan/heparin sulfate
Xlinked
no corneal clouding
Mucolipidoses
handout
Mucolipidoses
handout
ways to measure metals
chemical
-chemical chelator (will bind and change color, spectrophotometric assay)
flame inductive analysis
-burn, observe light refractions (more accurate, more sensitive)
ICP-MS (inductively coupled plasma mass spectrometry)
burn then run through mass spec
picks up many contaminants
difficult to discern between mineral and contaminant
Mg and Ca
soft alkaline metals
diffuse in and out because not tightly bound to enzymes
concentration is important
transition metals
tend to be held more tightly to proteins
bound for functionality (co-factors) but also safety, dont want them freely floating around body
some are not necessary but may be helpful (fluoride stabilize tooth enamel)
water and salts
intra/extracellular ion concentration can differe by 2 orders of magnitude
gradient drives cellular reactions (i.e. symporter diffusion H+ pulls in lactose)
(i.e. symporter pulls glucose into cell on one side, falls down gradient in other)

cell membranes permeable to H2) (aquaporins and ion channels allow this) need to maintain solute/water concentration to prevent lysis or cell shrinking
extracellular fluids act as conduit around cells, using entire surface area for exchange

volume estimate for 73kg person
24L intracellular
16L liquid extracelular
-interstitial volume 11.2L
plasma volume 3.2 L
Transcellular (inside organs) 1.6L

TBW estimate (Liters) = BW(lbs)/4 subtract 10% for obese person, add 10% for lean person
women have 10% less water than man of similar bodyweight

osmolality is particle(colute) concentration of fluid, units millosmoles/kg (mos-mol/kg)

Eextracellular fluid osmolality=intracellular fluid (to prevent lysis/shrinking)
ECF solutes (or osmoles) are very different from ICF due to action of transporters and active pumps and diff. permeability of membrances
ECF solutes are Na, Cl, HCO3
ICF solutes are K and organic phosphate esters (ATP, creatine phosphate, phospholipids, UTP, GTP,)
contributes to electrical charge

some soutes restricted to either ecf or icf and determine the effective osmolality of that compartment

since Na is mostly ECF, total body content reflects the ECF, same for K and ICF

cells can alter these levels in extreme situations

proteins estimated to be 15mEq, but difficult to measure due to size differences
serum albumin responsible for ~80% osmotic pressure of blood

milliequivalents=millimolar (when only one ionizable group)
mEq=2XmMolar
if there are two charges
mmol stays the same, must adjust for equivalents
if there are multiple ionizable groups with different pKs it is more pH dependent

proteins average to about 15mEw because they have many ionizable charges dependent on pH and salt concentrations
water and sodium
Na and K are main macrominerals

normal osmolality of plasma is 275-290 mosmol/kg and maintained by mechanisms that can detect 1-2% changes

avg western diet exceeds 150mmoles NACL per day (more than required)

avg 70kg man contains 100g sodium, half in bone, 40% ecf
recommended intake 2400, usual intake 3000-6000mg/day
requirement 500mg/day

can lead to hypertension, is a genetic component to na sensitivity and concentrations will affect people differently
water and sodium loss
water is lost from skin by sweating, liquid gets on surface, evaporates away, increases entropy of system, takes away energy, cools you off
mainly depends on heat and caloric expenditure
water is lost by exhaling, but also same amount created by metabolism (end product of cytochrome oxidase in ETC)
net activity of GI tract down to jejunum is secretion of water and electrolytes
net activty from jejunum to colon is reabsorption of water
typically ~100mL water per day excreted with feces
ingested food/water becomes isotonic so if vomit or have diarrhea lose ions
(cholera, lose water and ions, die quickly)

diarrheal fluid is close to isotonic, can lose liters

water/salt loss in urine is variable
water and potassium
recommended intake 3500mg
usual 4000-5000/day
requirement 2000mg
too much K will disrupt normal cellular function and cause death

na/k ratio linked to hypertension

deficiency of K heart arrythmias, muscle weakness, increased blood pH (alkalosis)

excess K cardiac arrest,
Calcium
regulate intracellular enzyme activities
secretory processes (nerve conductance, pancreatic enzymes, milk protein release)
blood clotting (K assists in binding gamma-carboxy-gluatamate to Ca)
muscle contraction
structure/growth of bones and teeth
binds to proteins affecting function
intracellular Ca can be .1uM (10,000x lower than ECF)
large variation in magnitude allows for dynamic range in cellular signaling
second messenger function
hormone-receptor interactions
-i.e. epi released from adrenal medulla, binds alpha receptors in liver, activates glycogenolysis and inhibits glycogen synthesis mainly by raising Ca levels in liver

calmodulin binding regulates many proteins and processes such as muscle contraction and inflammation, is a key regulator of many Ca dependent proceses
Ca and Vitamin D are intimately linked together in terms of uptake and function in the body

absorption of Ca affected by
Vit D
gastric Acid (makes more soluble)
lactose
citrate, malate,
protein, phosphorous
exercise

inhibited by
oxalic acid, phytic acid, dietary fiber
phosphate (binds to metals, makes insoluble)
steatorrhea (soaps)
too much fat getting past small intestine and sweeping stuff out
calcium deficiencies
rickets, osteomalacia (adult rickets) both reversible with supplements
vitamin D prevents ricekts (poor intestinal absorption/poor kidney reabsorption of Ca and Phopshate
osteoporosis (problems taking up and mobilizing Ca)
adult males should consume 1000mg/day, adolescents and women needmore
excessive intake increases risk of renal stone formation (genetic component)
Phosphorous P (phosphate PO4)
second most abundant mineral in body
85% in bones and teeth, 15% elsewhere (including nucleic acids)
also regulated by vitamin D
functions in structure of nucleic acids, phospholipids, activation of enzymes by phosphorylation, energy ATP
also acid-base balance (has many ionizable groups)

dietary sources
animal protein, milk, eggs
processed foods
food additive for pH adjustment, to sequester some things (like metals)
prevents bacterial growth
recommended intake 700-1250mg/day
dietary excess is commong, promotes Ca excretion
Magnesium
bone strength
ATP hydrolysis (stabilizes 3- charge of phosphate)
most bases floating around cells have an Mg on them
Enzyme cofactors (also for structural reasons) almost every enzyme in DNA/RNA reactions require Mg
binds nucleic acids directly and changes their shape
muscle relaxation after contractions
food sources
vegetables, nuts, legumes
30-50% of intake is absorbed
Intracellular>extracellular

deficiency
rate except with alcoholics (DTs, hallucinations)
hypertension, vascular disease, preeclampsia, osteoporosis
excess: anesthetic effects and diarrhea
Sulfur S (sulfate SO4)
sulfate in tissues and sulfur containing amino acids methionine and cysteine

key role in protein structure (Cys-S-S-Cys) disulfide bonds
involved in post-translational modification

key role in transfer gorups (acetyl CoA) things are easily attached to and removed from S

also critical in glutathione (SH a powerful tool)

no issue with def./excess as long as have normal diet
iron
key role in many enzymes
ETC
-complexes 1,2,3,4, iron in form of single iron atoms, iron-sulfur center that spontaneously form, iron sitting in heme and cytochromes
can transfer electrons
can bind oxygen
can catalyze reactions and do many things depending on its surroundings
transition metals, especially iron, are the molecular equivalent of nuclear fuel

iron and manganese are critical to body, but can be poisonous
can react with oxygen and make superoxide
reduced form can interact with hydrogen peroxide and make a hydroxyl radical (free radical with unpaired electron)
can destroy anything they touch
some enzymes make these on purpose

these metals can also be used to protect
catalase-destroys hydrogen peroxide (has heme in it)

Fe is redox active
can transfer electrons either way

Fe2+/Fe3+
reduction potential is the relative ability to give or accept electrons
the more negative, the more likely it will give up electrons, the more positive the more likely it will accept

redox midpoint potential, way to estimate an enzyme's ability to bind a substrate
electrical potential at which molecule is 50% oxidized and 50% reduced
cells use transition metals because they can be easily moved from one oxidation state to another without giving dangerous free radicals (due to d orbitals)
cant do this with organic molecules

Cytochrome A,C,B1 all contain iron
dramatic difference in reduction potential

Cytochrome F (.365mv) vs ferridoxin (-.432mv)
key point: proteins can grab a metal and by controlling surrounding organic elements (for example, embedded in heme prosthetic group or iron-sulfur center with different amino acids) they can tune it to whatever potential they want with same metal

can have iron at multiple potentials by controlling AAs around it
this is how ETC works
Flavins are organic rings that take up and give electrons
same flavin can have different potentials depending on what proteins are around them
main function of iron is redox chemistry

average 3-4g iron in body (half in blood via iron atom in hemoglobin)
stored as ferritin or hemosiderin

ferritin is a huge globe of many different monomers
hollow shell that contains blocks of oxidized iron
sequestering away from oxygen so that it doesnt react with oxygen and form reactive oxygen species

hemosiderin
mostly in liver, doles it out as necessary depending on blood concentration
males store about a gram, females less

iron overload
40-50g, mostly liver, spleen, bone marrow

myoglobin in muscle stores iron

ETC enzymes only 8mg to run enzymatic machines in cells (most is stored or used to transport oxygen)
strictly regulated

iron metabolism
Fe2+ is normal form, Fe3is very insoluble
reduction is activated by vitamin C
iron reaches plasma and is carried by transferrin
cells that need iron put a transferring protein receptor on surface
cells pick it up and store it as ferritin

iron can be stored in bone
every cell needs it
RBC huge amounts
reticular endothelial sells use it well

loss
liver sweeps iron into feces with bile salts
sweat
losing skin
bleeding


intestinal absorption
divalent metal transporter (DMT)
-transports many different metals
enzymes are blind that feel for certain structure
metals have similar overall shape, so they arent really differentiated by transporter
much is unknown about metal uptake in cells
taken up in 2+ form, also taken up as heme and citrate
once in intestinal cells, most will be stored as ferritin
ultimately shipped to blood stream on transferrin

iron at least 8mg per day to maintain stores since we lose about 8mg per day
RDAs higher when developing
females need more after menstruation ends and more during pregnancy for fetal development
genetically may be individual needs, we are unaware

iron uptake by transferrin
when cells have transferrin receptor on the surface, they bind the transferrin, then release iron by acidification in lysosomes
iron is then grabbed by internal proteins for storage

some metals are soluble in high acid, so easier to access in acidic condition

non-heme iron uptake
diet affects uptake
organic acids from plants, phytic acids
polythenols
-i.e. resveratrol
-have lots of OH that can grab metals, coordinate them and sweep them up in your diet

black tea and cocoa
bind iron tightly
drink lots of black tea, wash iron from diet

can stimualte uptake
Vitamin C
organic acids (i.e. citric acid)
heme
iron excess
hereditary defects
hemochromatosis
despite rarity, will see these in testing
iron overload

dietary overload is hemosiderosis
fad diet or heavy consumptoon of red wine or overdose of iron supplements
huge amount of oxidative stress
extra iron reacts with oxygen in body
some tissues are more sensitive (cardiac issues)
frataxin protein controls Fe levels in mitochondria
friedrich's ataxia-defective frataxin, buildup of iron in mitochondria
excess also decreases absorption of hormones and antibiotics

moderately high levels might be bad, body will try and maintain concentration at vigorous levels
infecting bacterium has no available iron
some bacterium cause hemolysis to release iron because they need it
iron deficiency
1 billion anemic people
dietary deficiencies
infection, heliobacter
ulcers
vitamin deficiencies
since DMTs are non discriminatory, you may get lead poisoning
transporter is waiting for iron,but grabbing other metals because similar in structure
inflammation
malabsorption
first thing seen in deificiency is anemia
Zinc
roles in many enzymes
involved with proteins that interact with DNA (zinc fingers)
histidines or cysteines that grab on to zinc

dna is a negative nucleic acid and zinc is positive

may have been evolutionary chosen zinc over iron because not redox active (cant add and take away electrons in biological conditions)
shaped and charged like iron but doesnt cause reactive oxygen species
hard to measure because it many things,hard to discriminate from background noise
uptake/absorption
histidines, cysteines, and phytic acid bind zinc tightly and sweep into diet
metallithioneins
proteins with 10-12 cysteines
regulation of movement and storage of zine through cells
intestinal absorption of zinc
much is unknown
once Zn is in, metallothioneins bind to them
might be specific transporters in blood, serum albumin may carry it as well
zinc storage
couple of grams, women less than men
turnover takes about a year, but estimated 1mg lost per day (skin loss)
liver turnover is faster
homeostasis regulates Zn levels in a tight range
zinc deficiency
take about 10mg/day
many enzymes require zinc
tissue damage, increase oxidative stress, immune deficiencies, developmental changes, skin lesions,

children develop later, not enough zinc for regulatory proteins that control cellular development
later onset of secondary sex characteristics

poor appetite (zinc linked to taste)
malabsorption diseases affect all minerals (i.e. IBS)
zinc excess
common belief zinc is a cure all
excess: nausea (50mg can have emetic effect)
because of DMT, too much of any mineral can affect others (ie iron and copper)
implicated in alzheimer's disease
can lower HDLs and increase cholesterols in bloodstream
copper
critical for complex 4- terminal oxygen reducer in ETC
has two ox states, 1+ and 2+
reduced copper is insoluble
implicated in prions and mad cow disease (bovine and human spongiform encephalopathy)
actual protein binds copper

deficiency can lead to anemia
copper uptake is linked to Fe uptake
if copper is deficient, Fe uptake is also deficient, leading to anemia
Deficiency: anemia, leukopenia, neutropenia, osteoporosis, seen in total parenteral nutrition (TPN)
excess can also cause anemia, indirectly. if you limit copper uptake, you limit iron uptake
excess: weakness, tremors

genetic diseases
wilson's disease (like hemochromatosis)
lvier cant get rid of copper, there is a buildup
early brain damage from ixidative stress, involuntary movements, psychoses, general liver damage, cirrhosis
classic greenish-gold ring in cornea from copper buildup
liver transplant or copper binding drugs
iodine
not really metal
critical to thyroid hormone - growth development, metabolism
micrograms per day
concentrated in thyroid
covalently bound to tyrosines in proteins
regulates metabolic rates
deficiencies: spontaneous abortion, irreversible brain damage
symptom in adult (goiter, enlarged thyroid)

excesses, no apparent effects, but can disrupt thyroid function like deficiency at chronic excess
most table salts have iodine
selenium
not an antioxidant, but involved in antioxidant processes
critical component of posttranslation modification of proteins (selenomethionine and selenocysteine)
similar electron shell to sulfur, but selenium is different enough to use it instead of sulfur for certain purposes (usually with proteins that have antioxidant defense)
excess: deposits into all sulfur proteins, when not every protein can use selenium in place of sulfur
adults require 55ug/day
deficiencies
-cardiac failure (sensitive to oxidative stress bc many mitochondria)
liver problems
cancer
atherosclerosis
hair loss (skin changes)

dermatitis seen in both excess and deficiency

peripheral neuropathy in excess

uptake is not well understood, hard to study because so little of it
synthesis, processing, secretion VLDL
Apo B100 protein (attached to lipoprotein) are synthesized on RER
Triacylglycerol (TGs) are synthesized on SER and/or on FA synthase in cytosol
TG and proteins are packaged in the Golgi complex to form VLDL
VLDL are transported to cell membrane in secretory vesicles and secreted by exocytosis
cholesterol located near surface because has OH group and is amphipathic
Apo B100 and Apo B48
made from same genes
Apo B100 found in VLDL and synthesized in liver, twice as long as ApoB48
Apo B48 found in chylomicrons and synthesized in intestinal cells
Different transcripts due to RNA editing
Apo B48 has UAA instead of CAA (introduces stop codon in intestinal cells)

VLDL major component is TG (not as much as chylomicrons)
epithelial cells lining gut will be packaging up the chylomicrons
go out into bloodstream
find an enzyme on lumen side of blood vessel called lipoprotein lipase
LPL takes off FA from VLDL, FA go into adipose and packaged as TGs and stored


Glucose comes in to make backbone of VLDL, Glycerol-3-P, which combines with FA CoA to make TG, which are then packaged as VLDL
VLDL meets LPL, breaks down TG to FA and glycerol and goes into adipose, becomes again TG

LPL works on chylomicrons and VLDL (both have pool TGs)

LPL is dependent on insulin

adipose only has one path to Glycerol-3-Phosphate via glucose to prevent futile cycle of TG synthesis and breakdown
insulin stimulates transport of glucose into adipose cells and stimulates synthesis and secretion of LPL

ApoCII obtained from HDL activates LPL (present on both VLDL and chylomicrons)

FA to TG in liver, sent into blood as VLDL

Acetyl CoA carboxylase regulated enzyme
total cholesterol (TC)
should be less than 200 mg/dL

formula is TC=HDL + LDL + (TG/5)
TG
refers to chylomicrons and VLDL on tests
chylomicrons
dietary, produced by cells lining small intestine

80% TG
VLDL
synthesized in liver
increase TG approximately
45% TG
LDL
carriers cholesterol to tissue
a lot of cholesterol
HDL
reverse transports cholesterol to liver
composed of more proteins compared to other constituents
lipoproteins and transport
Lipids (TG, FA)
chylomicrons transport from intestines to tissues
VLDL transports from liver to tissues
adipose to muscle and liver by FA on albumin in blood

cholesterol
to tissues by LDL
from tissues by HDL
structure of lipoprotein
apoproteins (binding things together, some towards center some out to liquid environment
amphipathic liquids
both charged and non charged parts

phospholipids have charge
some come in contact with liquid environment
some extends into center that is less charged

cholesterol - OH group
not esterified. doesnt have an FA attached to it

non polar lipids
located on the inside of the phospholipid

cholesterol esters - attached to LCFA
TG=no charge

Lipoproteins are different sizes
chylomicrons are huge
then VLDL
then LDL
then HDL
Apo A1
associated with HDL
activates LCAT/PCAT (same thing) in order to take cholesterol to cholesterol ester

ligand for HDL receptor

chylomicrons
ApoB100
LDL, VLDL, IDL

LDL receptor ligand
ApoB48
chylomicrons, chylo remnants,

chylo assembly and secretion, dietary lipids
ApoCI
VLDL, HDL, Chylomicrons
may activate LCAT
may inhibit hepatic uptake of chylo and VLDL remnants
APO CII
VLDL, HDL, Chylomicrons

Cofactor, activates LPL, is transferred between HDL and VLDL/chylomicrons
ApoCIII
VLDL, HDL, CHylomicrons
ApoE
VLDL, HDL, CHylomicrons, chylo remnants, LDL

hepatic receptor ligands for chylomicrons and LDL

is recycled between HDL and VLDL/chylomicrons
both ApoB100 and ApoB48 encoded by same gene
apoB100 attaches to LDL receptor
Deamination step whic changes the RNA by RNA editing from a C to a U changing CAA (gln) to UAA (stop)

ApoB48 codes first half of transcript

liver cells do not synthesize deaminase, so the resulting transcript and protein are longer than in intestinal cells. Apo B100 is about twice as long as ApoB48 and will attach to LDL receptor

ApoB48 will not
Apo A1
associated with HDL
activates LCAT/PCAT (same thing) in order to take cholesterol to cholesterol ester

ligand for HDL receptor

chylomicrons
ApoB100
LDL, VLDL, IDL

LDL receptor ligand
ApoB48
chylomicrons, chylo remnants,

chylo assembly and secretion, dietary lipids
ApoCI
VLDL, HDL, Chylomicrons
may activate LCAT
may inhibit hepatic uptake of chylo and VLDL remnants
APO CII
VLDL, HDL, Chylomicrons

Cofactor, activates LPL, is transferred between HDL and VLDL/chylomicrons
ApoCIII
VLDL, HDL, CHylomicrons
ApoE
VLDL, HDL, CHylomicrons, chylo remnants, LDL

hepatic receptor ligands for chylomicrons and LDL

is recycled between HDL and VLDL/chylomicrons
both ApoB100 and ApoB48 encoded by same gene
apoB100 attaches to LDL receptor
Deamination step whic changes the RNA by RNA editing from a C to a U changing CAA (gln) to UAA (stop)

ApoB48 codes first half of transcript

liver cells do not synthesize deaminase, so the resulting transcript and protein are longer than in intestinal cells. Apo B100 is about twice as long as ApoB48 and will attach to LDL receptor

ApoB48 will not
synthesis, processing, secretion VLDL
Apo B100 protein (attached to lipoprotein) are synthesized on RER
Triacylglycerol (TGs) are synthesized on SER and/or on FA synthase in cytosol
TG and proteins are packaged in the Golgi complex to form VLDL
VLDL are transported to cell membrane in secretory vesicles and secreted by exocytosis
cholesterol located near surface because has OH group and is amphipathic
Apo B100 and Apo B48
made from same genes
Apo B100 found in VLDL and synthesized in liver, twice as long as ApoB48
Apo B48 found in chylomicrons and synthesized in intestinal cells
Different transcripts due to RNA editing
Apo B48 has UAA instead of CAA (introduces stop codon in intestinal cells)

VLDL major component is TG (not as much as chylomicrons)
epithelial cells lining gut will be packaging up the chylomicrons
go out into bloodstream
find an enzyme on lumen side of blood vessel called lipoprotein lipase
LPL takes off FA from VLDL, FA go into adipose and packaged as TGs and stored


Glucose comes in to make backbone of VLDL, Glycerol-3-P, which combines with FA CoA to make TG, which are then packaged as VLDL
VLDL meets LPL, breaks down TG to FA and glycerol and goes into adipose, becomes again TG

LPL works on chylomicrons and VLDL (both have pool TGs)

LPL is dependent on insulin

adipose only has one path to Glycerol-3-Phosphate via glucose to prevent futile cycle of TG synthesis and breakdown
insulin stimulates transport of glucose into adipose cells and stimulates synthesis and secretion of LPL

ApoCII obtained from HDL activates LPL (present on both VLDL and chylomicrons)

FA to TG in liver, sent into blood as VLDL

Acetyl CoA carboxylase regulated enzyme
total cholesterol (TC)
should be less than 200 mg/dL

formula is TC=HDL + LDL + (TG/5)
TG
refers to chylomicrons and VLDL on tests
chylomicrons
dietary, produced by cells lining small intestine

80% TG
VLDL
synthesized in liver
increase TG approximately
45% TG
LDL
carriers cholesterol to tissue
a lot of cholesterol
HDL
reverse transports cholesterol to liver
composed of more proteins compared to other constituents
lipoproteins and transport
Lipids (TG, FA)
chylomicrons transport from intestines to tissues
VLDL transports from liver to tissues
adipose to muscle and liver by FA on albumin in blood

cholesterol
to tissues by LDL
from tissues by HDL
structure of lipoprotein
apoproteins (binding things together, some towards center some out to liquid environment
amphipathic liquids
both charged and non charged parts

phospholipids have charge
some come in contact with liquid environment
some extends into center that is less charged

cholesterol - OH group
not esterified. doesnt have an FA attached to it

non polar lipids
located on the inside of the phospholipid

cholesterol esters - attached to LCFA
TG=no charge

Lipoproteins are different sizes
chylomicrons are huge
then VLDL
then LDL
then HDL
Apo A1
associated with HDL
activates LCAT/PCAT (same thing) in order to take cholesterol to cholesterol ester

ligand for HDL receptor

chylomicrons
Apo A1
associated with HDL
activates LCAT/PCAT (same thing) in order to take cholesterol to cholesterol ester

ligand for HDL receptor

chylomicrons
ApoB100
LDL, VLDL, IDL

LDL receptor ligand
ApoB100
LDL, VLDL, IDL

LDL receptor ligand
ApoB48
chylomicrons, chylo remnants,

chylo assembly and secretion, dietary lipids
ApoB48
chylomicrons, chylo remnants,

chylo assembly and secretion, dietary lipids
ApoCI
VLDL, HDL, Chylomicrons
may activate LCAT
may inhibit hepatic uptake of chylo and VLDL remnants
ApoCI
VLDL, HDL, Chylomicrons
may activate LCAT
may inhibit hepatic uptake of chylo and VLDL remnants
APO CII
VLDL, HDL, Chylomicrons

Cofactor, activates LPL, is transferred between HDL and VLDL/chylomicrons
APO CII
VLDL, HDL, Chylomicrons

Cofactor, activates LPL, is transferred between HDL and VLDL/chylomicrons
ApoCIII
VLDL, HDL, CHylomicrons

inhibits LPL, may inhibit hepatic uptake of chylo and VLDL remnants
ApoCIII
VLDL, HDL, CHylomicrons

inhibits LPL, may inhibit hepatic uptake of chylo and VLDL remnants
ApoE
VLDL, HDL, CHylomicrons, chylo remnants, LDL

hepatic receptor ligands for chylomicrons and LDL

is recycled between HDL and VLDL/chylomicrons
ApoE
VLDL, HDL, CHylomicrons, chylo remnants, LDL

hepatic receptor ligands for chylomicrons and LDL

is recycled between HDL and VLDL/chylomicrons
both ApoB100 and ApoB48 encoded by same gene
apoB100 attaches to LDL receptor
Deamination step whic changes the RNA by RNA editing from a C to a U changing CAA (gln) to UAA (stop)

ApoB48 codes first half of transcript

liver cells do not synthesize deaminase, so the resulting transcript and protein are longer than in intestinal cells. Apo B100 is about twice as long as ApoB48 and will attach to LDL receptor

ApoB48 will not
Pathway for chylomicrons (CM)
small intestinal cell made nascent chylomicron with ApoB48 attached

composed of more TG than cholesterol

out in bloodstream ApoCII and ApoE are transferred from HDL to nascent CM

CM goes through capillaries and encounters LPL which takes TGs down to FAs and glycerol

extracellular LPL activated by ApoCII degrades TG in CM and VLDL to FAs which are taken up by adipose and resynthesized to TGs

as chylomicrons lose TGs they decrease size and become chylo remnants

CM remnants have more cholesterol esters than TGs
CM remnants no longer need ApoCII and give back to HDL
Keeps ApoE because it binds to receptor in liver which allows it to be taken up

cholesterol from CM may be used in liver to make bile or in membranes
if liver has enough cholesterol it will repackage as VLDL and send it back out

LDL binds to specific receptors on extrahepatic tissues and on the liver where they are endocytosed
both ApoB100 and ApoB48 encoded by same gene
apoB100 attaches to LDL receptor
Deamination step whic changes the RNA by RNA editing from a C to a U changing CAA (gln) to UAA (stop)

ApoB48 codes first half of transcript

liver cells do not synthesize deaminase, so the resulting transcript and protein are longer than in intestinal cells. Apo B100 is about twice as long as ApoB48 and will attach to LDL receptor

ApoB48 will not
Pathway for chylomicrons (CM)
small intestinal cell made nascent chylomicron with ApoB48 attached

composed of more TG than cholesterol

out in bloodstream ApoCII and ApoE are transferred from HDL to nascent CM

CM goes through capillaries and encounters LPL which takes TGs down to FAs and glycerol

extracellular LPL activated by ApoCII degrades TG in CM and VLDL to FAs which are taken up by adipose and resynthesized to TGs

as chylomicrons lose TGs they decrease size and become chylo remnants

CM remnants have more cholesterol esters than TGs
CM remnants no longer need ApoCII and give back to HDL
Keeps ApoE because it binds to receptor in liver which allows it to be taken up

cholesterol from CM may be used in liver to make bile or in membranes
if liver has enough cholesterol it will repackage as VLDL and send it back out

LDL binds to specific receptors on extrahepatic tissues and on the liver where they are endocytosed
pathway of VLDL
made in liver with ApoB100
has lots of TGs
nascent VLDL goes out into bloodstream
HDL gives it ApoCII and ApoE
goes through capillaries and encounters LPL and the TGs are broken down into FAs and gylcerol

FAs stored in adipose

VLDL decreases in size and become IDL and finally LDL

LDL gives ApoCII and E to HDL

can use ApoB100 which can go to any cell in body because every cell in bdoy had LDL receptor because they all need some cholesterol

can also go into liver because liver needs cholesterol
tissues making cholesterol based hormones especially need cholesterol
LPL
attach to capillary endothelial cells facing lumen of capillaries
synthesis and secretion stimulated by insulin
activated by ApoCII
implications for diabetics (Type I w no insulin, Type II isnt working well)
insulin wont be there to allow glucose to get into adipose tissue and wont be able to synthesize and bring LPL to surface
wHSL
HSL in the adipose
activated by glucagon stimulating the breakdown of TGs to FAs and gylcerol
FAs are needed quickly and will travel on albumin
Chylmicrons
made my epithelial cells
derived from dietary lipids
nascent chylomicrons have ApoB48 (then aquire ApoCII and Apo E)

become chylo remnants when TG:CHol = 1:1

AoE assists in CMRemnant docking in liver
VLDL
made in liver
derived from liver's synthesis of FA plus any FA from chylo remnants packaged as TG
nascent VLDL has ApoB100 and ApoCII and ApoE from HDL

Goes to IDL and LDL

ApoB100 is major apoprotein

LDL does not have ApoCII or ApoE

LDL carries cholesterol to peripheral tissues which have specific LDL receptors that recognize ApoB100

LDL receptors transport LDL into peripheral tissue via endocytosis

intracellular ACAT (acyl CoA cholesterol acyltransferase) takes cholesterol and adds LCFA to become cholesterol ester
allows it to be stored
LDL uptake by cell receptor mediated endocytosis
LDL particle has ApoB100 and alot of cholesterol ester

LDL receptor is being synthesized then sent to outside of cell where it is recognized by ApoB100
incorporated into vacuole
internalized
pH change so it can be broken down

Cholesterol comes out as lipid droplets
AA and FA can be used for anything
Cholesterol ester is stored to be used

Cholesterol regulates
its own synthesis via HMG-CoA Red

regulates LDL receptor synthesis

activates ACAT for storage
ACAT reaction
found in cytosol, creates storage form of cholesterol

cholesterol and fatty acyl CoA catalyzed by ACAT leads to cholesterol ester

Fatty Acyl CoA is attached to OH of cholesterol

cholesterol ester is nonpolar and can be stored as lipid droplet until needed
unusual forms of LDL
LDL is within circulation, but target is outside of circulation

in order for LDL to get to its receptor, it has to squeeze through and out into the ECM
how long it stays in ECM will determine some of the problems associated with Coronary Artery Disease
Lipoprotein A
LDL bound to apolipoprotein A
having too much is a risk factor for CAD
ApoA is structurally similar to plasminogen (attaches to blood clots to break them down) but no enzymatic activity

because it binds to the clots, it competes with plasminogen and prevents clot breakdown
antithrombolytic, procoagulant capacities

may not be all bad
small dense LDL
more artherogenic
can squeeze in easier into ECM and has tendency to stay there longer
lower binding affinity for LDL receptor
high penetration into arterial wall

Kringles-binds to clot so plasminogen digests it
HDL
reverse cholesterol transporter

ApoA-1 synthesis in liver and sent into bloodstrea, encounters peripheral tissue
complex interactions with ABCA-1
ABCA-1functions
-brings cholesterol out to surface so HDl can get it
-takes in ApoA-1 (there is series of rxns leading to ApoA1 coming out as nascent HDL)

becomes nascent HDL
(like flat pancake because phospholipids and cholesterol, but no non polar components to make it round

PCAT converts cholesterol to esters deriveing FA from phosphatidylcholine
-this enzyme is associated with HDL
as make more esters, it will get round

there is exchange occuring between VLDL and HDL via action of two enzymes

HDL is taking FAs off of phospholipids to make cholesterol esters
eventually it runs out of phospholipids, needs to make an exchange for new phospholipids

sometimes HDL can go right into liver through hepatic lipase or it can go past liver and give up some cholesterol in the liver and keep going
HDL
synthesized from liver as ApoA1 and secreted into bloodstream

transfers ApoCII and ApoE back and forth from CM and VLDL
Drives by ABCA1 to pick up cholesterol and take back to liver
called "reverse cholesterol transport) since its returning to liver
ABCA1s job is to get cholesterol out of tissue and on to outer leaflet of tissue

general functions include
antioxidant activity
inhibiting platelet activity

contains PCAT (phosphatidylcholine cholesterol acyl transferase)
enzyme that transforms cholesterol into a non polar cholesterol ester
reaction involves taking a FA off of phosphatidylcholine and transferring it to cholesterol
reaction is stimulated by apoA1
deficiency with this enzymes results in FishEye disease
-HDL not having many esters, roughly 20% of total cholesterol
patient presents with opacity in their cornea, which is dense and white, similar to eyes of boiled fish
otherwise benign
ABCA1 loads HDL with cholesterol from tissues
ABCA1 is ATP binding cassette 1
part of family of ~20 ABCs
function is to transport molecules in and out of tissues
one example is drugs, whether it is good or bad depends on what drug is doing in tissues
also bile transport
loads HDL with cholesterol from tissues
Tangier Disease
patient presents with enlarged, orange yellow tonsils
these people have very low HDL, sometimes barely any
as a result, tonsils collect a lot of cholesterol
disease state is a result of mutation ABCA1
-rare autosomal recessive disease
cannot eliminate cholesterol from tissues because ABCA1 cannot give to HDL
also ApoA1 cannot be processed into HDL
LP exchange
CETP-cholesterol ester transfer protein

PLTP
phospholipid transfer protein
transports molecules between HDL and VLDL
HDL can transport phopsholipids to VLDL since it has an abundance of it
essentially, enzymes are involved in remodeling of HDL
Role of liver
takes up chylomicron remnants
makes HDL at least the ApoA1 part
takes up HDL containing cholesterol on HDLs trip back from tissues
synthesizes cholesterol
-produces bile using some cholesterol
-secretes extra cholesterol into feces
synthesizes FAs and uses it to create VLDLs
Cholesterol comes from Food and Family
statin blocks major step in synthesis of cholesterol (HMG-CoA reductase)
biosynthesis of cholesterol
two enzymes
HMG CoA Synthase
makes HMG-CoA
(KB synthesis)
HMG-CoA synthase can make cholesterol or KBs

HMG-CoA reductase
second enzyme
makes mevalonic acid
rate-limiting step, once initiated cholesterol will be synthesized

after mevalonic acid synthesis there is a group of isoprenes
(groups of 5 carbon structures)
enzyme cyclase closes open rings and result is lanosterol
after lanosterol, you get cholesterol
cholesterol inhibits rate limiting step, HMG-CoA reductase (product inhibition)
Regulation of HMG CoA reductase
first, cholesterol is inhibiting a transcription factor (TF), SCREBP-2
cholesterol binds SCAP
-SCAP is attached to SCREBP2, is the precursor form of SCREBP2
binding occurs in ER, sequestering the TF there
prevents TF from getting into nucleus and inducing transcription (TS) of HMG-CoA Reductase

second event involves degradation of enzyme that makes HMG CoA reductase if sterols are present (if enough cholesterol is present)
-under such conditions, enzyme that makes HMG CoA reductase is ubiquinated and targeted for time in proteasome

third event is covalent modification by AMP-kinase which phosphorylates HMG-CoA reductase and makes it inactive
same type of regulator involved in regulation of acetyl coA carboxylase
insulin can use a phosphatase to get that phosphate off (reversing the conditions) and reactivating the enzyme

final event involves conditions of either high insulin or thyroxine or low glucagon or low glucocorticoid levels
these conditions regulate TS of HMG CoA reductase
when insulin or thyroxine is high, that telling cell that it needs HMG CoA reductase around
high glucagon or glucocorticoids says no we dont need it so downregulate it
high cholesterol can sneak up on you
shows that liver loads fat onto VLDLs which travel through blood and later become LDL
LDL cholesterol may become stuck as travels through blood, sticking to blood vessel wall
HDL take pieces of LDLs back to liver where cholesterol can be repackaged
if too much cholesterol in blood, not enough HDL to sequester, can cause blockage and heart attack
atherosclerosis
over time, plaque builds up in blood vessels
eventually, a blood clot has formed and blood vessel is closed off
LDL must squeeze through endothelial cells to get to tissues
LDLs can be oxidized and stuck in blood vessel walls
oxidants can be superoxide, nitric oxide, hydrogen peroxide
once oxidized, LDL cannot go back into bloodstream

stuck LDLs are phagocytized by monocytes that become macrophages, macrophages take up LDL by two receptors
high affinity and non specific receptor

become foam cells
start accumulating along blood vessel walls
contributes to plaque buildup though they are trying to eliminate oxidized LDL

lots of calcium=more stiff plaque buildup

Vitamin E, ascorbic Acid, Beta-carotene prevent oxidation
bilirubin might help as well
coronary artery disease equivalents
precursors that lead to it
-diabetes
-aortic aneurysm
-peripheral vascular disease
-carotid artery disease (stroke, transient ischemic attach)
framington risk equation
age for men is different than women, partially because of menopause
women have higher age before theyre at risk because of estrogen
metabolic syndrome
step 8 of ATPIII

considered to have metabolic syndrome if have three of following

abdominal adiposity/obesity
high blood pressure
hypertriglycerides (VLDLs, LDLs, Chylomicrons, low HDL)
Fasting hyperglycemia
inflammatory signs (likely due to microalbuminurea caused by albumin excretion through kidneys

metabolic syndrome can be reversed to some degree
vertical auto profile
conducted occasionally
can have HDL2 or 3 (2 is more protective)
can have LDL A or B (difference not specified)
Therefore total amount may not be indicative of good thing
CHD risk factors
similar to ATP III
positive (bad) risk factors include
male>45, female>55yrs or premature menopause
premature coronary artery disease in close relatives
smoking
hypertension
HDL under 35 mg/dL
diabetes
obesity
HDL above 60mg/dL is negative (good) risk factor)
can counteract positive risk factor
rsik factors have geometric rise (exponential)
LDL cholesterol based on risk category
LDL under 100 in general
if have low risk, LDL below 160
Moderate risk, LDL below 130
High risk, LDL below 100
beign with therapeutic life changes, dont jump right into drug therapy
for high risk patients, ATPIIIconsders keeping LDL below 100 a minum goal, NIH below 70
really hard to do, talk about giving everyone lipitor
why hyperlipidemia
smoking (risk for atherosclerosis)
high fat diet
diabetic
obese
hypertensive, high stress in life
homocysteine is separate risk factor (if not due to genetic deficiency, then due to low folate and/or vitamin b12 levels (or even low vitamin B6 levels)
biggest challenge is patient compliance

secondary causes include pregnancy (hypercholesteremia)
diabetes (hyperglyceridemia)
genetic causes of hyperlipidemia
LDL receptor def., LDL in bloodstream, cholesterol in bloodstream

abnormal ApoE, more chylomicrons, CM remnants

increased synthesis VLDL with decreased breakdown, then VLDL, TGs, lipids increas free

no LPL activity or are ApoCII deficient

cant break down CMs and VLDL, more TGs in blood
Tx approaches
statin is number one
inhibits HMG-CoA reductase
six different kinds of statins
side effects include having to monitor liver health/get tests

bile acid sequestrants
-bile acid is made from cholesterol and goes into intestine to coat lipid droplets in diet
helpful with incorporating lipids into cells
bile acids are usually recycled, but a bile acid sequestrant blocks this
instead they are eliminated into feces
body now has to make more bile, thus it pulls cholesterol from bloodstream in order to do so
side effects include bloating, constipation, triglycerides increase side effects

fibric acid/fibrates
ligands of ppar-alpha (peroxisome proliferator activated receptor)
increases LPL expression, lowers VLDL
-especailly a good thing if have high triglycerides
no so well if have high cholesterol
side effects include myopathy if combined with statins

niacin/nicotinic acid
mechanism not known
one of bodys vitamins
100x dose of RDA
side effects (flushing etc)

ezetimbe
second part of vytorin
keeps lipids fom being absorbed into diet

omega 3s
PUFA, inhibit TG synthesis
raises HDL
vitamins
cannot be synthesized by organism in amount sufficient for physiological needs

absence can cause specific deficiency syndromes
early 20h century funk purified thiamine, B1 from rice polishing
cured beriberi
ancient egyptian writings as old as 1500 BC record that liver consumption cured night blindness
1747 british physicailn lind discovered that acidic citrus fruits could miraculously cure scurvy

1855 japanese sailors ate polished rice and suffered from beriberi, cured by supplementing with diet of meat, milk, vegetables
13 vitamins essential for humans
vitamins play many roles in metabolism
typically used as cofactors for enzymes
-cofactors do post translational modifications to extend range of chemistry that can happen in cell

-coenzymes--are attached to enzyme as prosthetic groups, or considered cosubstrates (like NAD)

vitamins are organic
essential nutrients
conditionally essential nutrients (choline, lipoic acid, ubiquinone, taurine)

non-essential (that also confer health benefits)
-flourine to stabilize teeth
-flavonoids for antioxidants, phytoestrogens, carotenoids for antioxidants
most rapidly dividing cells are ones effected by vitamin deficiency
anemia (macrocytic, microcytic)
skin problems
CNS problems (BC energy is so critical)
fat soluble vitamins
A D E K
NIacin
coenzyme is Nicotinamide Adenine Dinucleotide or Nicotinamine Adenine Dinucleotide Phosphate

Redox reactions involving two-electron transfers
Riboflavin
B2
Flavin Mononucleotide
Flavin Adenine DiNucleotide

one or two electron transfers Redox
Pantothenate
B3
Coenzyme A
Transfer of acyl groups
Thiamine
Thiamine Pyrophosphate TPP
transfer of two-carbon groups containing a carbonyl

B1
pyroxidine
Pyroxidal Phosphate (PLP)
B6
Transfer of groups to and from AAs
Biotin
Biotin
ATP dependent carboxylation of substrates or carboxyl group transfer between substrates
Folate
tetrahydrofolate
transfer of one carbon substituents
especially formyl and hydroxymethyl groups, provides methyl group for thymine in DNA
Cobalamin
B12
Adenosylcobalamin
intramolecular rearrangements
Methylcobalamin
transfer of methyl groups
vitmin A
retinal, vision
vitamin K
vitamin K
carboxylation of glutamate residues
inositol
for phospholipids
a sugar alcohol with 6 OH groups
important for cell signaling, part of membrane glycoproteins
Choline
in phospholipids, methyl donor, has been demonstrated that healthy men on choline free diet develop liver damage
lipoic acid
required for pyruvate decarboxylase, animals can make this
PQQ
pyrroloquinoline quinine (methoxatin)
a redox cofactor for quinoproteins (flavoproteins, dehydrogenases
Vitamin D
synthesized when in sunlight