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31 Cards in this Set

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Amino group and Carboxyl group

General structure of amino acids includes an _______ and _______ both of which are bonded to the a-carbon

Amino group

The —NH2 functional group

Carboxyl group

The —COOH functional group that dissociates to give the carboxylate anion, —COO- and a hydrogen ion

Side chain group

The portion of an amino acid that determines its identity; represented by the letter R

Stereochemistry

The branch of chemistry that deals with the three-dimentional shape of the molecules

Chiral

Object that is not superimposable on its mirror image; nonsuperimposable mirror images

Achiral

Object that is superimposable on its mirror image

Stereoisomers

Molecules that differ from each other only in their configuration

Optical isomers

Stereoisomers is also called _______

L- and D-amino acids

Amino acids whose stereochemistry is the same as the stereochemical standards L- and D-glyceraldehyde, respectively

(1) polar and nonpolar nature of the side chain


(2) presence of an acidic or basic group in the side chain

Two particular important criteria of amino acids

Glycine

The simplest amino acid

Hydrogen atom

The side chain of the simplest amino acid, glycine, is a ________

Group 1

Which amino acids have nonpolar side chains?

Hydroxylysine

Hydroxyproline and _______ differ from the parent amino acids in that they have hydroxyl groups on their side chains; found in collagen

Hydroxylysine

Hydroxyproline and _______ differ from the parent amino acids in that they have hydroxyl groups on their side chains; found in collagen

Tyrosine

Thyroxine differs from _______ in that it has an extra iodine-containing aromatic group on the side chain; it is produced only in the thyroid gland

Proteolysis

Thyroxine is released as a hormone by _______ of thyroglobin

Carboxylate — negatively


Amino group — positively

In a free amino acid, the carboxyl group and amino group of the general structure are charged at neutral pH—the _______ portion negatively and the _______ positively

Zwitterion

Has equal positive and negative charges; in solution, it is electrically neutral

Electrophoresis

Method for separating molecules on the basis of the ratio of charge to size (or in an electric field)

Isoelectric pH (pI)

The pH at which a molecule has no net charge

Isoelectric point

Isoelectric pH is also known as the _______

Residues

Portions of monomer units included in polymers after splitting out water between the linked monomers

Peptide bond

An amide bond between amino acids in a protein

Peptides

Molecules formed by linking two to several dozen amino acids by amide bonds

Polypeptide chain

The backbone of a protein; formed by linking amino acids by peptide (amide) bonds

Resonance structures

Structural formulas that differ from each other only in the position of electrons

Oxytocin and Vasopressin

Two well-known examples with many structural features in common; each of these peptides contains nine (9) amino acid residues

Glycine


Alanine


Valine


Leucine


Isoleucine


Proline


Phenylalanine


Tryptophan


Methionine

Group of amino acids that has nonpolar chains consists of _______

GAVLIPPTM

(1) bond between the a-carbon and the amino nitrogen


(2) bond between thr a-carbon and carboxyl carbon

Two bonds with reasonably free rotation: