Use LEFT and RIGHT arrow keys to navigate between flashcards;
Use UP and DOWN arrow keys to flip the card;
H to show hint;
A reads text to speech;
229 Cards in this Set
- Front
- Back
--- Purine and Pyrimidine Bases ---
Purines have ### major forms. Pyrimidines have ### major forms. |
2
3 |
|
--- Cholesterol ---
Is an organic chemical substance classified as a waxy steroid of ***. |
fat
|
|
*** are the major energy storage compounds in mammals and plant seeds.
|
Triglycerides
|
|
--- Biosynthesis/Breakdown of Fatty Acids ---
1) Occur in different *** and ***. 2) Catalyzed by different sets of ***. 3) Only Biosynthesis uses the 3-C intermediate ***. |
1) pathways --- compartments
2) enzymes 3) malonyl-CoA |
|
In Humans
1) ### Essential AA. 2) ### Conditionally Essential AA. 3) ### breakdown pathways for each AA. |
1) 9
2) 6 3) 20 |
|
--- Nitrogen Fixation ---
1) Atmosphere make-up is *** N2. 2) Engine fixation produces... 3) Lightning fixation produces... |
1) 78.09%
2) NO and NO2 3) NO3- |
|
--- Purine Synthesis Pathway ---
1) Starting substrate is ***. 2) First real purine is ***. After this the 3) pathway splits into two branches yielding... |
1) ribose-5-phosphate
2) IMP(Inosine 5’-phosphate) 3) AMP and GMP |
|
Cholesterol...
derived from greek.... |
chole- (bile)
stereos (solid) chemical suffix -ol for an alcohol |
|
Metabolic oxidation of fats yields *#* kcal/g whereas carbohydrates and proteins yield only *#* kcal/g.
|
9 kcal/g --- 37 J/g
4 kcal/g --- 17 J/g |
|
--- Synthesis Of Fatty Acids ---
1) Biosynthesis Intermediate Malonyl-CoA is formed from *** and ***. 2) Vitamin B7 is AKA *** and is found in many carboxylation 3) enzymes including p*** / p***-CoA / a***-CoA carboxylase. |
1) Acetyl-CoA and Bicarbonate
2) Biotin 3) pyruvate/propionyl-CoA/acetyl-CoA |
|
--- AA Breakdown Pathways ---
converge into a few terminal pathways giving mainly... 1) *** (used for new glucose) 2) *** (TCA Cycle) 3) *** (TCA Cycle) |
1) pyruvate
2) acetyl-S-CoA 3) TCA cycle intermediates |
|
--- Nitrogen Fixation 10^12g/year ---
Non-Biological - ### 1) Industrial \ Combustion \ Lightning Biological - ### 2) Agricultural \ Non-agricultural \ Sea |
80
1) 50/20/10 175 2) 90/50/35 |
|
--- Purine/Pyrimidine Synthesis/Salvage ---
LONG-FORM NAMES 1) Activated Ribose is AKA as... 2) Synthesized from starting material *** VIA 3) the enzymatic action of ***. |
1) PRPP (5-PhosphoRibosyl-α-PyroPhosphate)
2) α-D-ribose-5-phosphate 3) PRPP synthetase (PhosphoRibosyl PyroPhosphate synthetase) |
|
--- Cholesterol ---
1) Dampens influence of *** variations on cell membrane permeability / fluidity. 2) In high t, cholesterol acts to *** fluidity. 3) In low t, cholesterol acts to *** fluidity. |
1) temperature
2) decrease 3) increase |
|
Typical 70-kg human fuel reserves:
400,000 kJ in *** 100,000 kJ in *** 2500 kJ in *** 170 kJ in *** |
body fat
protein glycogen glucose |
|
--- Biotin in Fatty Acid Synthesis ---
1) Biotin is a prosthetic group in several enzyme catalyzed *** reactions. 2) It's produced by *** bacteria and scavenged from ***. 3) GI tract absorption prevented by glycoprotein *** found in ***(food). |
1) carboxylation
2) intestinal --- bodily waste 3) avidin --- raw egg-whites |
|
--- AA Breakdown Pathways ---
1) *** type AAs give rise to new glucose. 2) *** type AAs give rise to acetyl-CoA or acetoacetyl-CoA. |
1) Glucogenic
2) Ketogenic |
|
--- Nitrogen Fixation ---
1) Fixation of one N2 requires *** ATP. 2) Biological/Non-Biological fixes 2x as much N2 as the other. |
1) 16
2) Biological 175 B VS 80 NonB |
|
--- Nucleotide Biosynthesis ---
1) *** Synthesis Pathway is branched 2) *** Synthesis Pathway is not branched |
1) Purine
2) Pyrimidine |
|
--- Cholesterol ---
Important component for the manufacture of *** acids, *** hormones, and vitamin ***. |
bile --- steroid --- D
|
|
Triacylglycerols are made of a glycerol *** with fatty acids *** at each hydroxyl.
|
moiety
esterified |
|
--- Biotin in Fatty Acid Synthesis ---
1) Avidin has highest known ligand Kds for Biotin which is ### to ###M. 2) Avidin's affinity for biotin is exploited in *** and other biochemical ***. |
1) 10 - 15 M
2) ELISA --- assays |
|
--- AA Breakdown Pathways ---
Solely Ketogenic AAs.... 1) *** gives product acetyl-CoA. 2) *** gives product acetoacetyl-CoA. 3) which can enter *** or create ***. |
1) Lysine
2) Leucine 3) TCA Cycle --- Ketone Bodies |
|
--- Haber-Bosch Process ---
1) Industrial process producing *** 2) from reagents *** and ***. 3) ***-based catalyst 4) Temperature... 5) Pressure... |
1) Ammonia
2) N2 and H2 3) iron 4) 400-500°C 5) 200 ATM |
|
--- Pyrimidine Biosynthesis ---
1) Starting substrate is *** which converted 2) into *** and *** in the cytosol of mammals 3) VIA the enzymatic action of ***. |
1) glutamINE
2) carbamoyl-phosphate and glutamATE 3) carbamoyl phosphate synthetase II |
|
--- Cholesterol ---
Cholesterol is the principal *** synthesized predominantly in the *** by animals . |
sterol --- liver
|
|
*** ***(mobilizes stored fat) is activated by P in a ***-mediated kinase cascade stimulated by glucagon or epinephrine or corticotropin.
|
triacylglycerol lipase
cAMP |
|
--- Acetyl-CoA Carboxylase ---
1) Bacteria - ### subunits 2) Higher plants/animals - - ### subunits |
1) 3
2) 1 |
|
--- AA Breakdown ---
1) Step 1 is performed by the enzyme *** (AKA ***). 2) Amino-Acid/Keto-Acid pair utilized is *** and ***. |
1) Aminotransferases (AKA transaminases)
2) Glutamate and α-KetoGlutaric Acid |
|
GOGAT?
|
glutamATE synthase
|
|
--- Pyrimidine Biosynthesis ---
1st reaction resembles 1st step of urea cycle. Except that *** replaces *** as the nitrogen donor. |
glutamINE replaces NH4+
[ammonium] |
|
--- Cholesterol ---
1) Belongs to a family of molecules called *** 2) which are all synthesized from the compound ***. 3) Family includes steroids, bile acids, g***, c*** and u***. |
1) terpenes
2) isoprene 3) gibberellins --- carotenoids --- ubiquinone ubiquinone AKA CoQ10 |
|
Triacylglycerol lipase is activated by P in a cAMP-mediated kinase cascade stimulated by the binding of *** or *** or *** to plasma membrane receptors.
|
glucagon
epinephrine corticotropin |
|
--- Bacteria Acetyl-CoA Carboxylase ---
Polypeptide Subunits... 1) *** c*** protein 2) *** c*** 3) *** |
1) biotin carrier protein
2) biotin carboxylase 3) transcarboxylase |
|
The AA *** has a central role ammonia assimilation.
|
Glutamate
|
|
GS?
|
GlutamINE Synthetase
|
|
--- Nucleotide Biosynthesis ---
One clear difference in the synthesis of... pyrimidine nucleotides and purine nucleotides is that... ribose-5-phosphate is linked after *** synthesis of the ***... rather than during synthesis. |
ring
base |
|
--- Cholesterol Biosynthesis ---
1) Pathway consists of ### stages and is 2) located in the *** of liver cells where 3) it begins with the starting compound ***. |
1) 4
2) cytosol 3) acetyl-CoA |
|
1) Triacylglycerol lipase catalyzes the release of fatty acids from...
2) Then *** lipase and *** lipase catalyze the release of the other fatty acids. |
1) carbons 1 or 3 of the glycerol moiety
2) Diacylglycerol --- monoacylglycerol |
|
--- Fatty Acid Synthase ---
1) FAS I is found in... 2) and has ### different functional activities and a main product of ***. 3) FAS II is found in... 4) and has products that are... |
1) vertebrates
3) 7 --- palmitic acid (16:0) 2) bacteria and plants 4) more variable |
|
Enzyme *** *** catalyzes net removal of N from AA pool.
1) One of few enzymes using........ as e-acceptor. 2) α-Carbon Oxidation is followed by ***, releasing ***. |
Glutamate Dehydrogenase
1) NAD+ or NADP+ 2) hydrolysis --- NH4+ ammonium |
|
1 metric ton = ### grams
|
1 000 000
|
|
--- Key Regulators of Pyrimidine Biosynthesis ---
1) ATCase is used by *** and CPS II is used by ***. 2) CPS II is inhibited by.... 3) CPS II is activated by.... |
1) Bacteria --- Mammals
2) UTP 3) ATP and PRPP |
|
--- Stages of Cholesterol Biosynthesis ---
1) Condensation of ### acetate units forming ***... which is 2) converted into molecule *** (#-C)... which undergoes self 3) polymerization into molecule *** (#-C)... which undergoes 4) cyclization forming the steroid nucleus. |
1) 4 --- mevalonate
2) isoprene --- 5C 3) squalene --- 30C 4) |
|
--- Glycerol & Fatty Acid Products ---
1) Exit adipocyte tissue by *** *** and 2) move to the blood plasma where they bind *** *** 3) which can bind to up to *** FA molecules. |
1) passive diffusion
2) serum albumin 3) 10 |
|
--- Synthesis Of Fatty Acids ---
1) Fatty Acids are assembled in ### steps. 2) When *** acid (#:#) forms it exits the cycle. 3) The acetyl group carbons... methyl C becomes C-# 4) and carboxyl C becomes C-# of the new F.A. |
1) four
2) palmitate --- 16:0 3) C-16 4) C-15 |
|
--- Excretion of Ammonia ---
1) Kidney use GLDH and *** to form ammonia. 2) Non-Kidney Tissues use GLDH and *** to form urea. 3) Hepatic Tissues converts *** to ***. |
1) glutamINase
2) glutamINE synthetase 3) ammonia to urea NH3 to CO(NH2)2 |
|
--- Ammonia Assimilation ---
Bacteria and Plants (not mammals) use these two sequential enzymes... |
(GS) GlutamINE Synthetase
and (GOGAT) glutamATE synthase |
|
ATCase(Bacteria) and CPS II(Mammals) are key regulators of *** biosynthesis
|
Pyrimidine
|
|
--- Action Words of Cholesterol Biosynthesis ---
1) *** 2) *** 3) *** 4) *** |
1) Condensation
2) Conversion 3) Polymerization 4) Cyclization |
|
Glycerol taken up by the liver...
1) P'ed and *** to dihydroxyacetone phosphate and then 2) *** to glyceraldehydes 3-phosphate and 3) used in *** or ***. |
1) reduced
2) isomerized 3) glycolysis or gluconeogenesis |
|
--- F.A. Anabolism VS Catabolism ---
Beta-oxidation 1) Electron acceptor? 2) Carrier for acyl groups? Fatty Acid Synthesis 3) Electron donor? 4) Carrier intermediates? |
1) NAD and FAD
2) CoA 3) NADPH 4) Two different -SH groups |
|
--- Excretion of Ammonia ---
1) Normal serum concentrations are ### to ### mM . 2) Levels above ### mM causes alkalosis and neurotoxicity. |
1) 20-40 mM
2) 400 mM |
|
glutamATE synthase (GOGAT)
1) Reagents? 2) Products? 3) Used by mammals? |
1) glutamINE + α-ketogluarate + NADPH
2) glutamATE (2) + NADP+ 3) NO |
|
ATCase?
|
(Aspartate TransCarbamoylASE)
|
|
--- HMG-CoA Reductase ---
1) Is used in Step ### of *** synthesis and 2) exists as an *** membrane protein of the ***(organelle) 3) where it serves as a *** *** *** and synthesizes mevalonate. |
1) 1 --- Cholesterol
2) integral --- ER 3) key regulatory enzyme |
|
Glycerol taken up by the liver...
1) P'ed and reduced to *** *** 2) isomerized to *** *** and used in glycolysis or gluconeogenesis. |
1) dihydroxyacetone phosphate
2) glyceraldehydes 3-phosphate |
|
--- Active Sites of Fatty Acid Synthase ---
1) Yeast - ### large polypeptide. 2) Vertebrates - ### large polypeptide. 3) In ***, its activity requires interaction of both polypeptides. |
1) two
2) one 3) Vertebrates |
|
--- Excess Ammonia [NH3] ---
1) Enzyme ***: [NH3] + glutamATE >>> glutamINE. Back-Up Plan 2 2) Reversal of Enzyme ***: [NH3] + α-ketoglutarate >>> glutamATE. 3) Low levels of α-ketoglutarate impairs ***. |
1) glutamINE synthase
2) GLDH (glutamATE dehydrogenase) 3) TCA Cycle |
|
GlutamINE Synthetase (GS)
1) Reagents? 2) Products? 3) Used by mammals? |
1) glutamATE + NH3 + ATP
2) glutamINE + ADP + Pi 3) YES |
|
CPS II?
|
CarbamoylPhosphate Synthase II
|
|
--- Cholesterol Biosynthesis ---
*** is the key regulatory enzyme. |
HMG-CoA Reductase
|
|
--- Stage of Fatty Acid Oxidation ---
1) Activation of fatty *** 2) Transfer and transport of *** group to *** and 3) Beta-oxidation cycle in the ***. |
1) acyl-CoA
2) acyl --- carnitine 3) mitochondria |
|
--- Acyl Carrier Protein ---
1) The *** prosthetic group is a flexible arm tethering the growing 2) FA chain to the surface of the fatty acid *** complex carrying 3) reaction intermediates from... |
1) 4 '-phosphopantetheine
2) synthase 3) one enzyme active to the next |
|
*** is a neurotransmitter and precursor for GABA.
|
Glutamate
|
|
GLutamATE DeHydrogenase (GLDH)
1) Reagents? 2) Products? 3) Used by mammals? |
1) α-ketogluarate + NH4 + (NADPH or NADH)
2) glutamATE + (NADP+ or NAD+) 3) YES |
|
PRPP?
|
PhosphoRibosyl PyroPhosphate
|
|
--- Cholesterol/Lipid Transport ---
1) C/L from food is packaged as.... 2) C/L from the liver is packaged as... 3) Reverse C/L transport is packaged as... |
1) Chylomicrons
2) VLDL 3) HDL |
|
Fatty acids are metabolized primarily as *** of CoA.
|
thioesters
|
|
--- Fatty Acid Synthase ---
1) It is composed of # enzymes and ***. 2) The flexible *** arm of *** reaches all active sites and 3) carrying the growing *** *** chain from one site to the next. |
1) 6 --- ACP
2) pantetheine of ACP 3) fatty acyl |
|
Glutamine contains a *** group at its terminal end.
|
CONH2
|
|
--- Nitrogen Fixation ---
1) Mammals lack the enzyme *** which 2) converts *** into ***. |
1) glutamATE synthase (GOGAT)
2) glutamINE into (2)glutamATE |
|
PRPP synthetase?
|
PhosphoRibosyl PyroPhosphate synthetase
|
|
--- Cholesterol Biosynthesis ---
1) Acetate is shuttled out of the *** (organelle) into the *** 2) as *** in a shuttle system also used during *** *** synthesis. |
1) mitochondria --- cytosol
2) Citrate --- Fatty Acid Synthesis |
|
--- Components of CoA---
1) *** 2) *** 3) *** |
1) Pantotenic acid
2) 3-phosphoadenoside diphsophate 3) b-mercaptoethylamine |
|
--- NADPH Sources for FA Biosynthesis ---
Adipose Tissue 1) 1st from the action of *** *** 2) 2nd from the... 3) In *** Tissues this order is reversed. |
1) malic enzyme
2) PPP(pentose phosphate pathway) 3) Liver/Mammary Tissues |
|
Glutamate contains a *** group at its terminal end.
|
COOH
|
|
Nitrate?
|
NO3−
|
|
IMP?
|
inosine 5’-phosphate
|
|
--- Cholesterol/Lipids ---
1) ***(modification) of Cholesterol increases lipophilicity. 2) Both C&L are transported in the blood as ***. |
1) Esterification
2) Lipoproteins |
|
--- Pantothenic Acid ---
1) AKA vitamin *** and is water-soluble. 2) Chemically it is the amide between *** and ***. 3) It's required for ACP(*** *** ***) involved in F.A. biosynthesis. |
1) B5
2) D-pantoate and beta-alanine 3) acyl carrier protein (ACP) |
|
--- Fatty Acid Catabolism ---
Beta-Oxidation is down-regulated in diets w/sufficient ***. |
carbohydrates
|
|
Glutamic Acid is AKA ***.
|
Glutamate
|
|
Nitrite?
|
NO2−
|
|
--- Regulation of Pyrimidine Biosynthesis ---
In animals, there is an additional point of regulation... The enzyme *** is competitively inhibited by its product ***. |
OMP decarboxylase --- UMP
|
|
--- Lipoprotein Compositions ---
1) *** are the least dense. 2) *** are highest in Protein. |
1) Chylomicrons
2) HDL |
|
--- Fatty-Acid Metabolism ---
1) Most natural unsaturated F.A.s are cis/trans 2) The intermediates of saturated F.A.s are cis/trans. |
1) cis
2) trans |
|
--- Regulation of Fatty Acid Biosynthesis ---
1) *** is the first enzyme in F.A. synthesis. 2) *** limits the transport of F.A. into the mitochondrial matrix for beta-oxidation. |
1) ACC (Acetyl-CoA Carboxylase)
2) Carnitine Acyltransferase I |
|
GLDH?
|
GLutamate DeHydrogenase
|
|
NiR?
|
Nitrite Reductase
NO3− ITE |
|
--- Comparison of Carbamoylphosphate Synthases ---
CPS I --- CPS II 1) Pathway? 2) Nitrogen Source? 3) Located? 4) Activator? 5) Inhibitor? |
1) Urea Cycle --- Pyrimidine Biosynthesis
2) NH4+ --- Glutamine 3) Mitochondria --- Cytosol 4) N-Acetylglutamate --- PRPP 5) none --- UTP |
|
--- Lipoprotein Compositions ---
1) *** are highest in Cholesteryl Esters. 2) *** are highest in Free Cholesterol. |
1) LDL
2) VLDL & LDL |
|
--- Intermediates in Fatty-Acid Metabolism ---
1) Saturated F.A.s give *** delta-*#*-unsaturated acyl-CoA. 2) UnSaturated F.A.s give *** delta-*#*-unsaturated acyl-CoA. |
1) trans --- 2
2) trans --- 3 |
|
--- Regulation of Fatty Acid Biosynthesis ---
High-carbohydrate meal raises blood *** levels (1) triggering *** release. (2) ACC is *** becoming active which then (3) catalyzes the formation of *** which inhibits (4) carnitine *** I thereby stopping the F.A. shuttle. |
glucose
(1) insulin (2) deP'ed (3) malonyl-CoA (1st intermediate of F.A. synthesis) (4) acyltransferase Acetyl-CoA Carboxylase(ACC) |
|
--- Urea Cycle Enzymes ---
1) Mitochondria uses... 2) Cytosol uses... |
1) OTC (Ornithine TransCarbamoylase)
2) ASS (ArgininoSuccinate Synthase) ASL (ArgininoSuccinate Lyase) Arginase |
|
NR?
|
Nitrate Reductase
NO2− ate |
|
--- Formation of deoxyRNA---
1) Synthesized from ***. 2) Catalyzed by an enzyme called *** that uses 3) a free *** at an active ***(AA) in the R2 site. |
1) ribonucleotides
2) RR (Ribonucleotide Reductase) 3) radical --- tyrosine |
|
--- Lipoprotein Compositions ---
1) The *** converts cholesterol into bile salts.... 2) it does NOT uptake cholesterol packaged as... |
1) liver
2) HDL |
|
--- Omega Oxidation of Fatty Acids ---
1) Occurs in these organs... 2) within these organelles... 3) w/preferred substrates of ### or ### C-atoms. |
1) Endoplasmic Reticulum
2) liver and kidney 3) 10 or 12 |
|
--- Regulation of Fatty Acid Biosynthesis ---
When blood glucose levels drop (5) *** release activates ***-dependent PKA which (6) *** and inactivates the enzyme *** causing malonyl-CoA levels to (7) fall and the resumption of the F.A shuttle into the *** *** AND (8) becoming the major fuel. |
(5) glucagon --- cAMP
(6) Ps -- ACC (7) mitochondrial matrix (8) Acetyl-CoA Carboxylase(ACC) |
|
--- Regulation of Urea Cycle ---
1) High concentrations of *** increases flux thru urea cycle. It stimulates synthesis of N-acetylglutamate which is an 2) allosteric activator of the enzyme ***. |
1) arginine
2) CPSI Carbamoyl Phosphate Synthetase I |
|
-- Amino Group Xfer to all AA ---
1) Proceeds from the substrate *** via enzymatic action of a ***. |
1) glutamate --- transaminase
|
|
--- Synthesis of Deoxthymidylic Acid ---
dTMP is formed from dUMP thru the enzymatic action of *** |
thymidylate synthase
|
|
--- Cholesterol Delivery ---
1) Xport from liver to extrahepatic tissue as... 2) Excess extrahepatic cholesterol is transported back as... 3) 4) |
1) LDL
2) HDL 3) 4) |
|
--- Fatty Acid Metabolism ---
1) Mitochondrial b-oxidation acts at the *** end. 2) Endoplasmic Reticulum b-oxidation acts at the *** end. |
1) carboxyl
2) omega |
|
--- Regulation of Fatty Acid Biosynthesis ---
Glucagon... 1) Triggers the mobilization of fatty acids in *** tissue. 2) Causes the enzyme *** to be P'ed becoming *** which.... 3) starts the F.A. *** and subsequent metabolism of F.A. . |
1) adipose
2) ACC --- inactive. 3) shuttle Acetyl-CoA Carboxylase(ACC) |
|
1) Alanine is converted to *** as the
2) amino group is transferred to *** 3) VIA the enzymatic action of ***. |
1) pyruvate
2) α-ketoglutarate 3) Aminotransferase |
|
-- Nitrate [NO3-] Reduction to Ammonia ---
1) Not found in ***. 2) Cytosolic NR (NitrATE Reductase) converts *** to ***. 3) Chloroplastic NiR (NitrITE Reductase) converts *** to ***. 4) e- come from *** in the photosynthetic ETC. |
1) animals
2) NO3- to NO2- 3) NO2- to NH4+ 4) reduced ferredoxin |
|
Thymidine is also known as ***(based on uracil)
|
5-methyluracil
|
|
--- Cholesterol Delivery ---
The liver takes up the *** of LDL, VLDL, and chylomicron by ***. |
remnants
endocytosis |
|
--- Omega Oxidation of Fatty Acids ---
1) 1st step --- CYP adds *** group onto the omega-C 2) which comes from *** and involves the electron donor ***. 3) 2nd step --- ADH oxidizes hydroxyl group to an ***. 4) ALDH oxidizes this group to an ***. |
1) hydroxyl
2) molecular oxygen (O2) --- NADPH |
|
--- Acetyl-CoA Carboxylase (ACC) ---
Allosteric Inhibition 1) *** Allosteric Activation 2) *** |
1) palmitoyl-CoA
2) Citrate 3) 4) |
|
CPSI?
|
Carbamoyl Phosphate Synthetase I
|
|
-- Nitrate [NO3-] Reduction to Ammonia ---
1) Not found in ***. 2) Cytosol contains this enzyme... 3) Chloroplast contains this enzyme... |
1) NitrATE Reductase (NR)
2) NitrITE Reductase (NiR) |
|
RR?
|
Ribonucleotide Reductase
|
|
--- Lipoprotein Compositions ---
1) Good cholesterol is AKA... 2) Bad cholesterol is AKA... |
1) HDL
2) LDL |
|
--- Omega Oxidation of Fatty Acids ---
1) Enzymes of the 1st step. 2) Enzymes of the 2nd step. |
1) cytochrome P450
2) Alcohol DeHydrogenase --- ALdehyde DeHydrogenase. |
|
--- Fatty Acid Desaturation ---
Vertebrates 1) Performed by a *** type enzyme located on the 2) *** face of the ***(organelle). Both 3) *** and *** undergo oxidation by Molecular Oxygen. |
1) Mixed-Function Oxidase
2) lumenal face --- smooth ER 3) fatty acyl-CoA and NADPH |
|
Glutaminase is an enzyme generating *** from ***.
|
glutamATE from glutamINE
|
|
Nitrate Reductase (NR)
1) Reagents? 2) Products? 3) Used by mammals? 4) Location? |
(Nitrate is NO3−)
1) NO3- + NADPH 2) NO2- + H2O 3) Nope 4) Cytosol |
|
--- Formation of deoxyRNA---
1) Synthesized from ***. 2) Catalyzed by an enzyme called *** that uses 3) a free *** at an active ***(AA) in the R2 site. |
1) ribonucleotides
2) RR (Ribonucleotide Reductase) 3) radical --- tyrosine |
|
--- Apolipoprotein Location ---
1) ApoA-I??? 2) ApoB-100?? 3) ApoC-II??? 4) ApoE??? |
1) HDL
2) LDL 3) Chylomicrons, VLDL and HDL 4) Chylomicrons, VLDL and HDL |
|
--- Omega Oxidation of Fatty Acids ---
1) 2nd step --- ADH oxidizes hydroxyl group to an ***. 2) ALDH oxidizes this group to an ***. |
1) aldehyde
2) carboxylic acid |
|
--- Other Fatty Acids ---
1) Omega-3s are ***unsaturated F.A.s with a 2) double bond after the ### C atom from 3) the *** end of the C-chain. |
1) poly
2) 3rd 3) methyl |
|
Nitrite Reductase (NiR)
1) Reagents? 2) Products? 3) Used by mammals? 4) Location? |
(Nitrite is NO2−)
1) NO2- + 6e- + 8H+ 2) NH4+ + (2)H2P 3) Nope 4) Chloroplast |
|
--- Synthesis of Deoxthymidylic Acid ---
dTMP is formed from dUMP thru the enzymatic action of *** |
thymidylate synthase
|
|
--- Apolipoprotein Location ---
Apo*** is found in HDL |
ApoA-I
|
|
--- Omega Oxidation of Fatty Acids ---
1) 3rd step --- *** end can be attached to CoA and enter the mitochondria undergoing normal b-oxidation. 2) Each pass of the "***-ended" F.A. through the pathway 3) yields dicarboxylic acids such as *** and ***. |
1) Either
2) double 3) succinate --- adipate |
|
--- Omega Fatty Acids ---
Omega-3 fatty acids synthesized from ALA 1) *** 2) *** Omega-6 fatty acids synthesized from LA 3) *** 4) *** |
1) (EPA) EicosaPentaenoic Acid
2) (DHA) DocosaHexaenoic Acid 3) (AA) Arachidonic Acid 4) --- |
|
Ammonia?
Ammonium? |
NH3
NH4+ |
|
Thymidine is also known as ***(based on uracil)
|
5-methyluracil
|
|
--- Apolipoprotein Location ---
Apo*** is found in LDL |
ApoB-100
|
|
-- Synthesis of Ketone Bodies ---
1) In fasting or diabetes, OAA is used for *** formation... 2) and *** units from acetyl-CoA are diverted to... 3) form the ketone bodies acetoacetate, *** and acetone. |
1) glucose
2) acetate 3) D-beta-hydroxybutyrate |
|
--- Omega Fatty Acids ---
1) Linoleic Acid (LA) is an ***-# fatty acid 2) α-Linolenic Acid (ALA) is an ***-# fatty acid 3) Both are considered *** fatty acids. |
1) omega-6
2) omega-3 3) essential |
|
-- Amino Group Xfer to all AA ---
1) Proceeds from the substrate *** via enzymatic action of a ***. |
1) glutamate --- transaminase
|
|
RR?
|
Ribonucleotide Reductase
|
|
--- Apolipoprotein Location ---
Apo*** is found in Chylomicrons, VLDL and HDL |
ApoC-II
ApoE |
|
-- Synthesis of Ketone Bodies ---
are collectively know as... 1) *** 2) *** 3) *** |
1) acetoacetate
2) D-beta-hydroxybutyrate 3) acetone |
|
Phosphatidate Is the Precursor of Both *** and ***.
|
Triglycerides and Glycerophospholipids
|
|
-- Nitrate [NO3-] Reduction to Ammonia ---
1) Not found in ***. 2) Cytosolic NR (NitrATE Reductase) converts *** to ***. 3) Chloroplastic NiR (NitrITE Reductase) converts *** to ***. 4) e- come from *** in the photosynthetic ETC. |
1) animals
2) NO3- to NO2- 3) NO2- to NH4+ 4) reduced ferredoxin |
|
--- Degradation of Purines ---
End product in... 1) Primates, reptiles and birds 2) Other mammals, reptiles and mollusks 3) Aquatic invertebrates |
1) uric acid
2) allantoic acid or urea[CO(NH2)2] 3) ammonia [NH3] |
|
--- Cholesterol ---
1) Greatest Consumer of Cholesterol... 2) # distinct mechanisms control Cellular Supply of Cholesterol. |
1) synthesis of bile acid
2) 3 |
|
-- Ketone Bodies ---
1) Acetone is formed by spontaneous *** of *** as well as... 2) the catalytic action of the enzyme *** ***. 3) Acetone can/can't be converted back to ***. |
1) decarboxylation of acetoacetate
2) acetoacetate decarboxylase 3) can't --- acetyl-CoA |
|
LA?
|
Linoleic Acid
|
|
-- Nitrate [NO3-] Reduction to Ammonia ---
1) Not found in ***. 2) Cytosol contains this enzyme... 3) Chloroplast contains this enzyme... |
1) NitrATE Reductase (NR)
2) NitrITE Reductase (NiR) |
|
--- Degradation of Purines ---
1) End product *** is only sparingly soluble in water. 2) Overproduction results in deposits in *** and cartilaginous tissues. 3) Resulting in a disease called ***. |
1) Uric acid
2) kidneys 3) gout |
|
--- Cholesterol in Normal Adults ---
1) Synthesize # ***/day 2) Consume # ***/day 3) De *** synthesis maintains constant cholesterol level 4) in the body of # - # weight/volume. |
1) 1 g/day
2) 0.3 g/day 3) novo 4) 150 - 200 mg/dL |
|
-- Ketone Bodies ---
1) Unlike F.A. are *** and can cross the *** barrier. 2) Synthesis in liver is effectively *** because the... 3) enzyme catalyzing the conversion of *** to *** isn't present. |
1) water soluble --- blood-brain
2) irreversible 3) acetoacetate to acetoacetyl-CoA |
|
ALA?
|
α-Linolenic acid
|
|
Nitrate Reductase (NR)
1) Reagents? 2) Products? 3) Used by mammals? 4) Location? |
(Nitrate is NO3−)
1) NO3- + NADPH 2) NO2- + H2O 3) Nope 4) Cytosol |
|
--- Degradation of Purines ---
1) Urease, used by *** Invertebrates, 2) catalyzes the hydrolysis of *** into... 3) *** and ***. |
1) Aquatic
2) urea [(NH2)2CO] 3) CO2 and ammonia[NH3] |
|
--- Regulation: Cholesterol Metabolism ---
1) Regulation of *** activity / level. 2) Regulation of excess intracellular free cholesterol by ***. 3) Regulation of *** cholesterol levels via... LDL receptor-mediated *** and HDL-mediated *** ***. |
1) HMGR (HMG CoA Reductase)
2) ACAT (acyl-CoA:cholesterol acyltransferase) 3) plasma uptake --- reverse transport |
|
-- Ketone Bodies ---
1) *** and *** are synthesized in the mitochondria of 2) *** cells where they then diffuse into the bloodstream 3) and are metabolized by the *** and ***. |
1) acetoacetate and D-beta-hydroxybutyrate
2) liver 3) brain and muscles |
|
*** Is the Precursor of Both Triglycerides and Glycerophospholipids
|
Phosphatidate
|
|
Nitrite Reductase (NiR)
1) Reagents? 2) Products? 3) Used by mammals? 4) Location? |
(Nitrite is NO2−)
1) NO2- + 6e- + 8H+ 2) NH4+ + (2)H2P 3) Nope 4) Chloroplast |
|
--- Degradation of Purines ---
1) Primates excrete ***. Other mammals undergo 2) an additional reaction involving the enzyme *** 3) which converts it into *** for excretion. |
1) uric acid
2) urate oxidase 3) allantoin |
|
--- Regulation: HMG CoA Reductase ---
1) Main function is to... 2) Most active form is... 3) P'tion occurs through the enzyme *** when 4) the levels of *** decrease/increase. |
1) synthesize cholesterol
2) deP'ed 3) AMPK (AMP-activated protein kinase) 4) AMP --- increase |
|
-- Synthesis of Ketone Bodies ---
are collectively know as... 1) *** 2) *** 3) *** |
1) acetoacetate
2) D-beta-hydroxybutyrate 3) acetone |
|
Ammonia?
Ammonium? |
NH3
NH4+ |
|
--- Degradation of Purines ---
Final Metabolites from First to Last 1) 2) 3) 4) 5) |
1) Uric Acid
2) Allantoin 3) Allantoate 4) Urea 5) Ammonia |
|
--- Regulation: AMPK Activity ---
1) Main function of enzyme is to... 2) It activates *** functions... 3) and deactivates *** functions... |
1) P(inhibit) HMGR (HMG CoA Reductase)
2) catabolism - (glucose Xport, glycolysis, fatty acid oxidation) 3) anabolism (fatty acid, cholesterol, protein biosynthesis) |
|
--- Ketone Bodies ---
Under normal conditions: 1) Utilized as energy source in *** and ***. Under starvation conditions: 2) *** can derive ### % of it’s energy from here. 3) Spares *** protein from being scavenged for ***. |
1) cardiac muscle --- renal cortex
2) Brain --- 70% 3) muscle --- gluconeogenesis |
|
--- Amino Acid Synthesis Pathways ---
The *** is a classic branched pathway. |
aspartate-family
|
|
--- Degradation of Pyrimidines ---
1) methylmalonic semialdehyde is an intermediate of.... 2) this is diverted into... |
1) Thymine
2) TCA cycle |
|
--- HMG-CoA Reductase ---
1_ Rate controlling enzyme of the *** pathway 2) which controls synthesis of ***. |
1) Mevalonate Pathway
2) cholesterol |
|
--- Ketone Bodies ---
***: May occur during starvation, diabetes or alcoholism |
Ketoacidosis
|
|
*** is a Compound that is...
1) a PPP intermediate 2) Involved w/synthesis of aromatic AAs |
erythrose-4-phosphate
|
|
--- Degradation of Pyrimidines ---
1) malonic semialdehyde is an intermediate of.... 2) this is diverted into... |
1) Cytidine --- Uridine
2) fatty acid synthesis |
|
--- Mevalonate Pathway ---
1) Rate-controlling enzyme is... 2) Pathway produces cholesterol and other ***. |
1) HMGCR (HMG-CoA Reductase)
2) isoprenoids |
|
--- Ketoacidosis ---
1) Acetoacetate and beta-hydroxybutyrate levels in s***... 2) lower blood pH below ### and sometimes as low as ###. 2) Normal pH of blood is ### to ###. |
1) serum
2) 7.35 --- 6.9 3) 7.35-7.45 |
|
--- Amino Acid Synthesis Pathways ---
α-ketoglutarate is the starting substrate for... |
glutamate family AAs
|
|
--- Degradation of Pyrimidines ---
Thymine 1) Intermediates? 2) Final product is... |
1) methylmalonic semialdehyde
methylmalonyl-CoA succinyl-CoA 2) TCA cycle |
|
--- ATP VS AMP ---
1) *** is a better indicator of a cell’s energetic state. 2) *** is normally found at higher concentrations. |
1) AMP
2) ATP |
|
--- Regulation of Fatty Acid Oxidation ---
In the liver, fatty acyl-CoA formed in the cytosol has these pathways... 1) *** in the *** or 2) *** in the ***. |
1) b-oxidation --- mitochondria
2) conversion into triacylglycerols and phospholipids --- cytosol |
|
--- Amino Acid Synthesis Pathways ---
oxaloacetate is the starting substrate for... |
aspartate family AAs
|
|
--- Degradation of Pyrimidines ---
Cytidine --- Uridine 1) Intermediates? 2) Final product is... |
1) malonic semialdehyde
malonyl-CoA 2) fatty acid synthesis |
|
--- ATP VS AMP ---
1) Typical ATP concentrations are... 2) Typical AMP concentrations are... |
1) 5-10 mM
2) 0.1 mM or less |
|
--- Regulation of Fatty Acid Oxidation ---
Inhibition of transferring fatty acyl-CoA into the mitochondria. 1) Inhibition of *** acyltransferase I by ***-CoA. 2) Inhibition of *** dehydrogenase by an elevated ratio of [NADH]/[NAD+]. 3) Inhibition of *** by high levels of acetyl-CoA. |
1) carnitine --- malonyl
2) beta-hydroxyacyl-CoA 3) thiolase |
|
--- Amino Acid Synthesis Pathways ---
pyruvate is the starting substrate for... |
branched-chain group AAs
|
|
--- Salvage Pathways for Purines ---
1) APRT catalyzes the conversion of.... 2) into... |
1) PRPP and adenine
2) AMP APRT (Adenine PhosphoRibosylTransferase) PRPP (PhosphoRibosyl PyroPhosphate) |
|
--- ATP VS AMP ---
If ATP drops by 10% then AMP drops by ***%. |
600%
|
|
--- Amino Acid Synthesis Pathways ---
3-phosphoglycerate is the starting substrate for... |
serine-glycine-cysteine group AAs
|
|
--- Salvage Pathways for Purines ---
1) HGPRT catalyzes the conversion of.... 2) into... |
1) PRPP and (hypoxanthine OR guanine)
2) IMP OR GMP Hypoxanthine-Guanine PhosphoRibosylTransferase (HGPRT) |
|
muscular contraction
1) ATP + H2O > ??? adenylate kinase 2) ADP + ADP > ??? |
1) ADP + Pi
2) AMP + ATP |
|
--- Amino Acid Synthesis Pathways ---
phosphoenolpyruvate is the starting substrate for... |
aromatic family AAs
(also needs erythrose-4-phosphate) |
|
Hypoxanthine is a purine/pyrimidine derivative whose nucleoside is called ***.
|
purine --- inosine
|
|
adenylate kinase
??? > ??? |
ADP + ADP
>>> AMP + ATP |
|
--- Amino Acid Synthesis Pathways ---
erythrose-4-phosphate is the starting substrate for... |
aromatic family AAs
(also needs phosphoenolpyruvate) |
|
The purine base of Inosine is called...
|
Hypoxanthine
|
|
--- Regulation: Other Hormones & Cholesterol Metabolism ---
1) Glucagon and Epinephrine reduce HMGR activity via ***... 2) Insulin increases HMGR activity via ***.... |
1) PKA and PPI-1 (deP'ed HMGR = less C)
2) PKB (P'ed HMGR = more C) |
|
--- Amino Acid Synthesis Pathways ---
In bacteria, Threonine (aspartate-family) serves as a precursor to *** (branched-chain AA). |
Isoleucine
|
|
Name the forms of U in its Salvage Pathway...
|
uracil [base]
uridine [base + ribose] UMP [base + ribose + phosphate] |
|
--- Regulation: Other Hormones & Cholesterol Metabolism ---
1) Hormones *** reduces C synthesis. 2) Hormones *** increases C synthesis. |
1) Glucagon and Epinephrine
2) Insulin |
|
--- Amino Acid Synthesis Pathways ---
Glutamate Family AAs include... |
Glutamate
Glutamine Proline Arginine (from α-ketoglutarate) |
|
Name the forms of T in its Salvage Pathway...
|
thymine [base]
thymidine [base + deoxyribose] dTMP [base + deoxyribose + phosphate] |
|
SCAP?
|
SREBP Cleavage Activating Protein
|
|
--- Amino Acid Synthesis Pathways ---
Aspartate Family AAs include... |
Apartate
Asparagine Methionine Threonine (from oxaloacetate) |
|
--- Amino Acid Synthesis Pathways ---
Branched-Chain Group AAs include... |
Alanine
Valine Leucine Isoleucine (from pyruvate) |
|
--- Salvage Pathways for Pyrimidines ---
base [E1] base+ribose [E2] base+ribose+P 1) E1 is called... 2) E2 is called.... 3) What E releases P? |
1) [base] phosphorylase
2) [base] kinase 3) E1 |
|
SREBP?
|
Sterol Regulation Element-Binding Protein
|
|
--- Amino Acid Synthesis Pathways ---
3-Phosphoplycerate is the metabolic precursor of what AAs? |
Serine
Glycine Cysteine |
|
--- Thymine vs Uracil ---
T differs from U in that it.... |
has an additional...
5' methyl group |
|
--- Regulation: Gene Expression & Cholesterol Biosynthesis ---
1) Transcriptional Regulation controls gene expression of *** via a 2) family of proteins called *** which activate transcription upon binding DNA. |
1) HMG-CoA reductase.
2) SREBPs (Sterol Regulation Element-Binding Proteins) |
|
--- Amino Acid Synthesis Pathways ---
Aromatic Family AAs include.. |
Tryptophan
Phenylalanine Tyrosine (from phosphoenolpyruvate and erythrose-4-phosphate) |
|
--- Thymine vs Uracil ---
U differs from T in that it.... |
lacks a...
5' methyl group |
|
--- SREBP Activation ---
1) SREBP are transcriptional activators of *** and are initially found 2) bound with *** in the membrane of the *** causing it to be inactive. 3) When *** levels decrease, the complex migrates to the *** where its N-terminal domain is cleaved 2x and migrates to the nucleus where it activates transcription of sterol-regulated genes. |
1) HMGR (HMG-CoA Reductase)
2) ER membrane --- SCAP 3) sterol --- Golgi SREBPs (Sterol Regulation Element-Binding Proteins) SCAP (SREBP cleavage activating protein). |
|
--- Amino Acid Synthesis Pathways ---
These AAs are derived from α-ketoglutarate... |
Glutamate
Glutamine Proline Arginine |
|
--- Mevalonate Synthesis Pathway ---
High flux through this pathways causes high/low rate of HMGR degradation. |
high
|
|
--- Amino Acid Synthesis Pathways ---
These AAs are derived from oxaloacetate... |
Apartate
Asparagine Methionine Threonine |
|
--- Mevalonate Synthesis Pathway ---
1) HMGR is localized to the *** and 2) like SREBP contains a *** domain. 3) *** concentrations of sterol increase HMGR degradation 4) which occurs within a multiprotein complex called the ***. |
1) ER
2) SSD (Sterol-Sensing Domain) 3) Increasing 4) proteosome |
|
--- Amino Acid Synthesis Pathways ---
These AAs are derived from pyruvate... |
Alanine
Valine Leucine Isoleucine |
|
The primary signal directing proteins to the proteosome is a # kDa protein called ***.
|
7.6 kDa
ubiquitination |
|
--- Amino Acid Synthesis Pathways ---
These AAs are derived from 3-Phosphoplycerate... |
Serine
Glycine Cysteine |
|
--- Regulation: ACAT & Cholesterol ---
High C concentrations activate ACAT which increases *** of cholesterol for . |
esterfication --- storage
ACAT (Acyl-CoA-Cholesterol AcetylTransferase) |
|
--- Amino Acid Synthesis Pathways ---
These AAs are derived from phosphoenolpyruvate and erythrose-4-phosphate... |
Tryptophan
Phenylalanine Tyrosine |
|
--- Regulation: LDL Receptor & Cholesterol ---
High C levels diminish transcription of LDL receptor genes leading to... 1) +/- number of LDL Receptors and 2) decreased transport of cholesterol from the *** to the ***. |
1) -
2) blood --- cytosol |
|
--- Vitamin B6 ---
1) Its active form is AKA ***. 2) Coenzyme in all *** reactions and a 3) coenzyme in some *** and *** reactions. |
1) Pyridoxal-phosphate (PLP)
2) transamination 3) decarboxylation and deamination |
|
--- Physiological Functions of Bile Acid ---
1) Only significant mechanism for... 2) Prevents precipitation of *** in the ***. 3) *** agent for triacylglycerols\fat digestion via *** from the ***. 4) Facilitates absorption of... |
1) cholesterol elimination
2) cholesterol --- gallbladder 3) Emulsifying --- lipases --- pancreas 4) fat-soluble vitamins |
|
--- Vitamin B6 ---
1) The *** group of PLP forms a *** linkage with the... 2) ε-amino group of a specific *** in the aminotransferase enzyme 3) and catalyzes what's called a *** (double-displacement) reaction. |
1) aldehyde --- Schiff-base
2) lysine 3) ping-pong |
|
--- Lipases ---
1) Enzyme that catalyzing the formation or cleavage of *** molecules. 2) They are a subclass of *** enzymes. |
1) fats
2) esterases |
|
--- Essential Amino Acids ---
|
--- Essential Amino Acids ---
|
|
--- Conjugated Bile Salts ---
Amide bonds with *** or *** |
glycine or taurine
|
|
--- Conditionally Essential Amino Acids ---
|
--- Conditionally Essential Amino Acids ---
|
|
--- Statin Drugs ---
1) Act through *** inhibition of the enzyme *** which 2) reduces intracellular cholesterol levels causing the *** 3) to upregulate expression of *** leading to the increased 4) clearance of *** from the bloodstream. |
1) competitive --- HMGR (HMG-CoA reductase)
2) liver 3) LDL receptor 4) LDL (low-density lipoprotein) |
|
--- NonEssential Amino Acids ---
|
--- NonEssential Amino Acids ---
|
|
Bile Acids OR Salts???
1) Best emulsifying agent? 2) pKa of 4-5 3) OH groups on same side |
1) Salt
2) Salt 3) Acids |
|
--- Aspartate-Family Amino Acid Regulation ---
|
--- Aspartate-Family Amino Acid Regulation ---
|
|
--- Bile Salts & Acids ---
Conjugated Bile Salts 1) "Good/Better" emulsifying agents 2) pKa is "higher/lower" 3) Chemically unique in that... |
1) Better
2) lower --- 4-5 pKa 3) Amide bonds with glycine or taurine |
|
--- Bile Acids & Salts ---
Primary Bile Acids 1) "Good/Better" emulsifying agents 2) pKa is "higher/lower" 3) Chemically unique in that... |
1) Good
2) higher --- 5-6 pKa 3) all OH groups are on same side |