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61 Cards in this Set

  • Front
  • Back

Carbon source of autotrophs

CO2

Carbon source of heterotrophs

Performed organic molecules from other organisms

Energy source of phototrophs

light

Energy source of chemotrophs

Reduced inorganic or organic compounds

Electron source of lithotrophs

Reduced inorganic molecules

Electron source of organotrophs

Reduced organic molecules

Metabolism

total of all chemical reactions in the cell and is divided into two parts (catabolism and anabolism)

catabolism

break down of organic molecules

anabolism

synthesis of organic molecules

energy

capacity to do work or to cause particular changes

chemical work

synthesis of complex molecules

transport work

take up of nutrients, elimination of wastes, and maintenance of ion balances

mechanical work

movement of organisms or cells and movement of internal structures

ATP

used to transfer energy from cell's energy conserving systems to the systems that carry out cellular work

First law of thermodynamics

energy cannot be created nor destroyed

Second law of thermodynamics

energy cannot be changed from one form into another without a loss of usable energy

Entropy

measure of randomness or disorder

Free energy

the amount of energy that is free to do work after a chemical reaction

Exergonic reaction

energy is released


negative delta G

Endergonic reactions

input of energy is required


positive delta G

Reversible reactions

Have free energy near zero; at equilibrium

Equilibrim

reaction is at equilibrium when rate of forward reaction = rate of reverse reaction

Equilibrium constant

expresses the equilibrium concentrations of products and reactants to one another

Standard Reduction Potential

a measure of the tendency of the reducing agent to lose electrons

Oxidation-reduction reactions

electron transfers

reductant/reducing agent

electron donor

oxidant/oxidizing agent

electron acceptor

NAD

nicotinamide adenine dinucleotide

NADP

nicotinamide adenine dinucleotide phosphate

FAD

flavin adenine dinucleotide

FMN

flavin mononucleotide

coenzyme Q (coQ)

a quinone, also called ubiquinone

protein catalysts

have a great specificity for the reaction catalyzed and the molecules acted on



catalyst

a substance that increases the rate of a reaction without being permanently altered

substrates

reacting molecules

products

substances formed by reaction

apoenzyme

a protein component of an enzyme

cofactor

nonprotein component of an enzyme

prosthetic group

firmly attached

coenzyme

loosely attached

holoenzyme

apoenzyme + cofactor

Oxidoreductase

oxidation-reduction reactions

Transferase

reactions involving the transfer of groups between molecules

Hydrolase

hydrolysis of molecules

lyase

removal of groups to form double bonds or addition of groups to double bonds

isomerase

reactions involving isomerization

ligase

joining of two molecules using ATP energy

transition-state complex

resembles both the substrates and the products

activation energy

energy required to form transition state complex

How do enzymes lower activation energy

-by increasing concentrations of substrates at active site of enzyme


-by orienting substrates properly with respect to each other in order to form the transition-state complex

denaturation

loss of enzyme's structure and activity when temperature and pH rise too much above optima

competitive inhibitor

directly competes with binding substrate to active site

noncompetitive inhibitor

binds enzyme at site other than active site; changes enzyme's shape so that it becomes less active

Cech & Altman

discovered that some RNA molecules also can catalyze reactions

3 mechanisms of metabolism

-metabolic channeling


-regulation of the synthesis of a particular enzyme


-direct stimulation or inhibition of the activities of a critical enzyme

metabolic channeling

differential localization of enzymes and metabolites

compartmentation

differential distribution of enzymes and metabolites among separate cell structures or organelles

allosteric regulation

effector binding alters shape of active site, e

Covalent modification

reversible addition or removal of a chemical group that alters enzyme activity

Feedback inhibition/ product inhibition

inhibition of one or more critical enzymes in a pathway regulates entire pathway

isoenzymes

different enzymes that catalyze the same reaction