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248 Cards in this Set
- Front
- Back
A mutation changes the __________ sequence of a gene
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Nucleotide
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Many mutagens are chemicals or forms of ___________
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Radiation
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T or F different mutations can cause the same disorder?
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True
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The effect of a particular mutation depends on where in the ________ the change occurs
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Protein
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Recessive mutations are generally associated with a loss/gain of function phenotype?
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LOSS
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Dominant mutations are generally associated with a loss/gain of function phenotype?
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GAIN
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DNA repair reduces the _________ rate
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Mutation
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Defects in DNA repair can cause a variety of disorders including _________
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Cancer
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What type of mutations occur during gamete formation and will be passed on to the offspring?
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Germline mutations
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What type of mutations occur in the tissues not passed on to offspring?
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Somatic mutations
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What type of mutations cause many types of cancer because they occur in the tissues?
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Somatic mutations
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What type of mutations have increased in the population and occur due to natural selection?
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Advantageous
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What was the first disease to be understood at the molecular level?
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Sickle cell anemia
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The difference between normal and sickle cell hemoglobin is one _________ in the beta chain
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Amino acid
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In sickle cell anemia, normally occuring ________ is replaced by ________
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Glutamate/valine
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The DNA change in sickle cell anemia is a single base change in the coding strand from G_G to G_G
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GAG/GTG
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What happens to the beta chains in sickle cell anemia under low oxygen conditions?
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They stick together and form long fibers that deform the cells ("sickling")
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What is the term that means damaged sickled blood cells have caused damage and pain to capillary beds resulting in a sickle cell crisis?
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Hydroxyurea
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In which race is sickle cell anemia most common?
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African descent
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Which amino acid (Valine/Glutamate) contains an acidic side chain?
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Glutamate
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Which amino acid (Valine/Glutamate) contains a hydrophobic side chain?
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Valine
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Name 5 places collagen is found
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Bone, cartilage, skin, tendons, dentin
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What three amino acids form collagen?
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Glycine, hydroxyproline, and proline
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Of the three amino acids in collagen, which one is the smallest?
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Glycine
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What is the disease caused by one glycine out of the hundreds of amino acids in collagen being replaced by alanine, resulting in weakened collagen?
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Osteogenesis imperfecta
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In the disease osteogenesis imperfecta, what is the amino acid that replaces a single glycine in the collagen that results in weakened collagen?
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Alanine
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What is another name for the collagen disorder Brittle Bone disease?
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Osteogenesis imperfecta
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What is the disease caused by a mutation that prevents procollagen from being processed into mature collagen?
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Ehlers-Danlos syndrome
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A substance that causes mutations is known as a ________
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Mutagen
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Mutations may arise __________ or be_________ by environmental causes
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Spontaneously/ induced
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Two normal parents have a child with achondroplasia. The genetic condition was not inherited, it arose ___ _______ in one of the gametes he developed from
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De Novo (anew; afresh)
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__________ mutation rates usually arise from errors in replication
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Spontaneous
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Larger/smaller genes have a higher spontaneous mutation rate
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Larger
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In 30% of DMD cases the mutation is __________ because the gene is very large. (Other cases are X-linked recessive)
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spontaneous
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Neurofibromatosis type 1 has a very high/low mutation rate
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HIGH
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What 2 types of mutations occur frequently at palindrome sequences?
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Deletions and insertions
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Mutations are likely to occur at ________ DNA sequences because they confuse the replication enzymes
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Repetetive
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Give an example of a disorder due to a mutation involving direct repeats
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Alpha thalassemia
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Give an example of a disorder due to a mutation involving repetetive DNA sequences
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Alkaptonuria - CCC
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Chemicals, environmental pollutants and medical treatments can all cause what type of mutation?
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Induced mutation
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Cells can repair most of the mutation damage from a _____ mrem dose of radiation
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360
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What is the term for chemicals that structurally resemble nucleotides and are incorporated into DNA or RNA and thus pairs with a different nucleotide than typically fits into that space
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Base analogs
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What is the environmental cause of mutations that changes a base for example a C to a G
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Chemical modification of bases
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What is an environmental factor that causes mutations by producing frame shifts?
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Chemicals that bind to DNA
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What is an example of a chemical that binds to DNA and causes a frame shift?
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Alpha benzopyrene
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What is the chemical found in cigarette smoke that is a flat molecule that can slip between base pairs of DNA and cause mutations?
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Alpha benzopyrene
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Chemicals that bind to DNA and cause a frame shift mutation are referred to as ________ agents
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Intercalating
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A change in a single DNA base is referred to as a _________ mutation
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POINT
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________ mutations do not change the code eg a mutation that changes UCU to UCG - still codes for serine
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Silent
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________ mutations change the genetic code to that of a different amino acid
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Missense
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Give an example of a disorder caused by a missense mutation
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Sickle Cell Anemia - GAG mutates to GUG
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What type of mutation changes codons for amino acids to STOP codons resulting in a shortened protein?
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Nonsense mutations
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Give 2 examples of a splice site mutation
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BRCA1 produces a protein missing several amino acids due to exon skipping. Familial dysautonomia -exon skipping in a nervous system gene
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What is the term that means a mutation has caused an exon to be missed out at splicing?
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Exon skipping
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Deletions and insertions may account for ____-____% of all known mutations
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5-10%
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What type of mutation would occur if UGC were changed to UGA?
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NONSENSE MUTATION
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What type of mutation would occur if UGU were changed to UGC?
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SILENT MUTATION
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If three bases were inserted into DNA would there be a frame shift?
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NO
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_________ genes are DNA sequences that are very similar to the protein encoding portion of a gene but are not translated and are most likely evolutionary "leftovers"
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Pseudogenes
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________ disease, a lysosomal storage disorder can result from crossover between the normal gene and the pseudogene
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Gaucher disease
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Jumping genes also known as _______ can interrupt a gene when they jump into it causing mutation
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Transposons
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Myotonic dystrophy shows anticipationdue to expansion of a CTG triplet. It is an example of a ______ _______ disorder
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Triplet repeat disorder
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What is the triplet repeat disorder caused by the DNA bending into hairpins which interfere with replication?
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Fragile X
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Triplet repeat disorders are described as _____ _____ _____ _____ _____ mutations as they cause something to happen that should not
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Dominant toxic gain of function
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Name 3 disorders due to triplet repeat gene expansions
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Huntington's disease, fragile X, myotonic dystrophy
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All cells have ______ systems to repair damaged DNA
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Enzyme
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________ repair corrects errors in replication
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Mismatch repair
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________ repair corrects damage due to UVB and oxidative damage
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Nucleotide excision repair
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______ repair corrects damage due to oxidative damage
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Base excision repair
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What is the rare autosomal recessive disorder in which individuals lack an efficient nucleotide excision repair system?
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Xeroderma pigmentosum
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In a child with xeroderma pigmentosum, why would they need to stay indoors and avoid exposure to the sun?
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They do not have an efficient nucleotide excision repair system so damage from the sun is difficult to repair and early death from skin cancer is common
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What is the incidence of xeroderma pigmentosum?
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1:250,000
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What is the term for the disease arising from a deficiency in DNA repair enzymes that results in dwarfism, mental retardation, failure to develop, scaly hair and rapid aging?
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Trichothiodystrophy
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What are the results caused by trichothiodystrophy a disorder arising from a deficiency in DNA repair enzymes?
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Dwarfism, mental retardation, failure to develop, scaly hair and rapid aging.
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What is the autosomal recessive disease resulting from a defect in a kinase enzyme involved in a cell cycle checkpoint?
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Ataxia Telangiectasis (AT)
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What are the complications arising from the disease ataxia telangiectasis?
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Very high incidence of cancer, Diabetes, developmental problems and lung infections
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What is the life expectancy of a patient with Ataxia Telangiectasis (AT)?
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Death in late teens/early 20's
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What is the incidence of ataxia telangiectasis?
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1:40,000
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Are heterozygotes of the ataxia telangiectasis gene rare?
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NO - greater than 1.5% of the population are carriers
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What is the increased risk to the heterozygote of the ataxia telangiectasis gene?
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2-6 X's Increased risk of CANCER
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What type of colon cancer is inherited?
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Hereditary nonpolyposis colon cancer
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How does hereditary nonpolyposis colon cancer occur?
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In inherited gene that results in a defect in a mismatch repair enzyme located on chromosome 2
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Is hereditary nonpolyposis autosomal dominant or recessive?
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DOMINANT
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What is the incidence of hereditary nonpolyposis?
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Common - 1:200
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A disease in which individuals have a high risk of cancer resulting from a defect in a kinase enzyme
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Ataxia telangiectasis
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Exon skipping in the BRCA 1 gene causes this disease
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Breast cancer
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Children develop multiple skin cancers with exposure to sunlight with this disease
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Xeroderma pigmentosum
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A triplet repeat disorder affecting men more than women
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Fragile X
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Shows a high spontaneous mutation rate due to the large size of the gene
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Dystrophin gene causing DMD
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A mutation such as GGG changed to GGA
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SILENT
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This would happen if two bases were added into a coding sequence
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Frameshift
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Adjacent bases that can form dimers when exposed to UV light
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Thymine
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This is an example of such a sequence GCTAGC
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Palindrome
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The smallest amino acid found in proteins
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Glycine
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What is the branch of genetics that links chromosome variations to specific traits?
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Cytogenetics
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What is the term for the addition or deletion of chromosomes that are responsible for a variety of disorders?
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Chromosomal aneuploids
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The structure of individual chromosomes can be affected by what 4 things?
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Deletions, duplications, inversions, or translocations
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Clinical cytogenetics is the study of __________
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Chromosomes; their structure and inheritance
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Cytogenetic disorders are present in nearly ____ of live births; ______% of pregnancies in women older than 35 and _____% of spontaneous first trimester abortions
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1%; 2%; 50%
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What are 4 indicators for chromosomal analysis in a child?
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Problems of early growth and development such as: failure to thrive, developmental delay, ambiguous genitalia and/or mental retardation
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What types of incidents are clinical indications for chromosomal analysis to allow accurate genetic counseling for future pregnancies?
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Still birth and neonatal death, fertility problems, two or more miscarriages, family history of chromosomal abnormality in 1st degree relative, neoplasia and pregnancy in older women (over 35)
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What percentage of parents with infertility or two or more miscarriages are found to have chromosomal abnormalities?
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3-6%
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Why is neoplasia in indication for chromosomal analysis?
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Many cancers are associated with one or more chromosomal abnormalities
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What are the 3 essential parts of the chromosome?
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Telomere, centromere and origins of replication
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What are the origins of replication in a chromosome?
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Regions of DNA where replication forks start
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Why are telomeres important?
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They act as caps to keep the sticky ends of the chromosome from randomly clumping together
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What is the purpose of the centromere?
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Joins 2 sister chromatids to make up X shaped chromosome. Site where kinetochore is formed, point of attachment for spindle fibers
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Approximately how many bases and what % of the genome are contained in chromosomes 21 and 22?
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33 million - 1% of the genome
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How many genes are contained on chromosome 21?
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245
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How many genes are contained on chromosome 22?
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525
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Which chromosome has a higher density chromosome 21 or chromosome 22?
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22
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What are the non-staining gaps on chromosomes called?
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Fragile sites
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Fragile X syndrome occurs when the code CGG is repeated more than ______ times so that the FMR-1 gene turns off & can not produce the protein that allows normal brain development
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200
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What is the gene involved in fragile X syndrome?
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FMR-1 gene
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What is the term for the dark staining on chromosomes that consists of highly repetitive sequences and is for the most part genetically inactive?
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Heterochromatin
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What is the lighter staining on chromosomes that harbors more protein encoding genes?
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Euchromatin
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A karyotype is an image of __________
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The chromosomes of a single cell
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Which is the largest of the chromosomes?
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1
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Chromosomes are numbered in order of size - which is the smallest?
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23
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Karyotypes are described by 5 things. What are they?
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# of chromosomes, sex chromosome content, presence or absence of individual chromosomes, nature and extent of any abnormality, structural alterations
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How would you translate the following description of a karyotype: 46,XY del(5p)
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A male with a deletion in the short arm of chromosome 5 but otherwise chromosomally normal (deletion on chromosome 5 = 5 cri du chat syndrome)
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How would you translate the following description of a karyotype: 47, XX+21
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A female with an extra chromosome 21 otherwise chromosomally normal. Down's Syndrome
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How would you translate the following description of a karyotype: 47, XX +18
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A female with an extra chromosome 18 otherwise chromosomally normal. Edwards Syndrome
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Less than ___% of newborns are born with chromosomal abnormalities. What does this tell us about chromosome abnormality?
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1%/ most are not compatible with life
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What is the term that means extra (full) sets of chromosomes are present?
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Polyploidy
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What is the term that means one extra set of chromosomes is present and is responsible for 17% of spontaneous abortions mostly due to 2 sperm cells fertilizing one egg?
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Triploidy
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What is the term that means there are 2 extra sets of chromosomes present and is responsible for 5% of spontaneous abortions due to a failure in cytokinesis in the first mitotic division?
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Tetraploidy
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What is the term for changes in the number of individual chromosomes?
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Aneuploidy
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What is the leading cause of aneuploidy?
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Non disjunction at meiosis
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What is the term for an extra individual chromosome?
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Trisomy
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What is the term that means an individual chromosome is missing?
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Monosomy
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Are any autosomal monosomies lethal?
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ALL are lethal
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What are the most common aneuploidies?
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Trisomy 13,18,21 and an extra or missing X or Y chromosome
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When a person is affected with aneuploidy or polyploidy the individuals exhibit ______ where a genetic or chromosomal abnormality occurs in some body cells
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Mosaicism
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In which chromosome is it common to see trisomies in embryos but is not seen in newborns which means it is not compatible with life?
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Chromosome 16
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Live births occur with trisomy of which 3 chromosomes?
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13, 18, and 21
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Trisomy 13 causes what syndrome?
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Patau syndrome
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Trisomy 18 causes what syndrome?
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Edwards syndrome
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Trisomy 21 causes what syndrome?
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Down Syndrome
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What is the incidence of Patau syndrome?
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1:15,000
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What is the incidence of Edwards syndrome?
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1:11,000
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What is the incidence of Down Syndrome?
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1:900
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What is the chromosomal anomaly that is usually lethal at a young age (mean survival 6 mos) causes multiple facial malformations, and severe malformation of the brain and heart?
|
Trisomy 13- Patau syndrome
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What is the chromosomal anomaly that is usually lethal at a young age( survival 2-4mos), causes low birth weight, slow growth, mental retardation and heart malformations. 80% are female (males more likely to spontaneously abort)
|
Trisomy 18 - Edwards Syndrome
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What are some of the characteristics of Down Syndrome?
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Wide flat skull, large tongue, physical growth and mental development is retarded, 40% have congenital heart defects, level of function varies
|
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In which trisomy syndrome are children very susceptible to infections and have a higher chance of leukemia?
|
Down Syndrome
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What is the survival age of a person with Down Syndrome?
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Sometime in the 5th decade of life
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In which trisomy caused syndrome do older individuals develop amyloid plaques in the brain similar to those seen in Alzheimer disease?
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Down Syndrome - Trisomy 21
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What is the syndrome sometimes referred to as XO in which individuals have only one X chromosome?
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Turner Syndrome
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What is the incidence of Turner Syndrome?
|
1:2,000 births (99% fetuses die before birth
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What is the phenotype of Turner's Syndrome?
|
Female, wide set nipples, webbing of neck, short stature, sexually immature, infertile, normal intelligence, often not dx'd till puberty when menstruation fails to occur
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Many with Turner's syndrome are mosaics - what does this mean?
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XO and XX - may be fertile but carries high risk of chromosomal abnormalities
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Why is there no record of an individual without an X chromosome surviving?
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The X chromosome carries genes essential for life
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What is the disorder that occurs in 1:1000 women in which they display a taller stature, possible reduced mental ability and menstrual irregularities though they are usually fertile?
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Triplo X - XXX
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How many barr bodies would you expect to see in the cells of a woman with XXX genotype?
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2
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What is the disorder that occurs in 1:1000 males in which some individuals are underdeveloped sexually, lack secondary sexual characteristics, and may be slow learners?
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Klinefelter Syndrome - XXY
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|
|
|
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What is the genotype forTurner's syndrome?
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XO
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What is the genotype for Klinefelter syndrome?
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XXY
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What is the genotype for Triplo X?
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XXX
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How many barr bodies would you expect to see in the cells of a man with Klinefelter syndrome?
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ONE
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Which syndrome afffects males only Turners or Klinefelters?
|
Klinefelters
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Which syndrome affects females only Klinefelters or Triplo X
|
Triplo X
|
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What is the disease also known as "super male"?
|
Jacob's syndrome
|
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What is the incidence of Jacob's syndrome?
|
1:1000
|
|
What are some of the symptoms of Jacob's syndrome?
|
Greater height, higher levels of testosterone, acne is prevalent, normal sexual development, fertile
|
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What is the genotype of someone with Jacob's syndrome?
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XYY
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What syndrome is associated with a large deletion of the short arm of chromosome 5 (the breakpoints vary but all lack band 15) and causes mental retardation?
|
Cri Du Chat Syndrome
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Most cases of cri du chat syndrome are anticipated/sporadic?
|
Sporadic
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Duplications are more likely to have an effect if the duplication is ______ and involves ______ genes. Only when _______ genes are involved do symptoms arise
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Large/several/ several
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|
What is the technology called that is used to detect deletions and duplications?
|
Fluorescence In Situ Hybridisation - FISH
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|
What is the term that means regions of the chromosome are "flipped around"?
|
Inversions
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What would happen to the gametes of an individual that is heterozygous for an inversion?
|
They will have abnormal chromosomes - unbalanced gametes
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_________ occur when a chromosome segment is moved to another non homologous chromosome (chromosomes that are not members of the same pair)
|
Translocations
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In which type of translocation (reciprocal/robertsonian) is not information lost but there may be gene disruption that can cause disease?
|
Reciprocal
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Why would there be a tendency for pregnancies to end in spontaneous abortion in an individual who is a translocation carrier?
|
They will produce unbalanced gametes
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What type of translocations (reciprocal/ Robertsonian) involves the loss of the short arms of 2 non homologous chromosomes leaving the centromeres to fuse?
|
Robertsonian
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5% of _________ Syndrome cases involve a Robertsonian translocation between chromosomes 21 and 14
|
Down Syndrome
|
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T or F It is possible for an individual to have Down Syndrome but not have 47 chromosomes
|
TRUE
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How is it possible for an individual to have only 46 chromosomes and yet have Down Syndrome?
|
Robertsonian translocation - 14 and 21 fuse together - not true trisomy called translocation Down Syndrome or familial Down Syndrome.
|
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What is the term that means non disjunction results in an individual inheriting both chromosomes from one parent?
|
Uniparental Disomy
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|
A woman with only one X chromosome has this syndrome?
|
Turner's
|
|
This karyotype is 69, XXX
|
Triploid
|
|
Found at the end of a chromosome
|
Telomer
|
|
A change in the number of individual chromosomes
|
Aneuploidy
|
|
Cri Du Chat is caused by this
|
Deletion
|
|
When a chromosome segment is moved to another non homologous chromosome
|
Translocation
|
|
A disease resulting from a deletion on chromosome 5 short arm
|
Cri Du Chat
|
|
The individual with trisomy 21 has ______ Syndrome
|
Down
|
|
A _____ is a group of members of the same species in a given geographical area who are capable of mating and producing offspring
|
Population
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The _____ _____ _____ was assembled from the DNA of 10 individuals
|
Human genome project
|
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________ are more genetically diverse than ________ (pick one for each - populations/individuals)
|
Population/individuals
|
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What is the term for the set of information carried in the population?
|
Gene pool
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The allele _______ describes how often a particular allele appears in the gene pool of a particular population
|
Frequency
|
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What is the most common allele for Cystic Fibrosis?
|
F508 allele
|
|
How is allele frequency in a population calculated?
|
from the occurrence of the persons with the disease plus the alleles carried in the heterozygotes
|
|
What is the name of the Law that relates the allele frequency?
|
Hardy Weinberg Law
|
|
What is the formula for the Hardy Weinberg Law?
|
P2+2pq+q2=1
|
|
In the Hardy Weinberg equation the individuals in the population with cystic fibrosis would be represented as? p,q,2pq,p2,q2
|
Q2
|
|
What is the frequency of sickle cell anemia in the black population if heterozygote frequency is 1/12?
|
1/12 X 1/12 = 0.0069 1:144 chance of affected child is 25% so 144 X 4 = 576
|
|
What is the term for molecular scissors or a protein that recognizes specific short nucleotide sequences and cuts DNA at those sites?
|
Restriction enzyme
|
|
How does DNA profiling work?
|
Detects copy number variants of very short repeated sequences found in the non-coding region of the genome.
|
|
What is the procedure of analyzing the DNA in samples of a person's body tissue or body fluid for the purpose of identification?
|
DNA profiling
|
|
If DNA differs in size by only one base is it possible for DNA profiling to recognize the difference?
|
YES
|
|
Hardy Weinberg Law has a number of assumptions list them
|
Large population, random mating, all genotypes have = ability to reproduce, no other factors to change allele frequency (no migration, mutation etc…)
|
|
Over time populations that drank milk accumulated moer _____ ____ alleles.
|
Lactose tolerant
|
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What is the term that means differential reproduction of better adapted genotypes?
|
Natural selection
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The ability of a certain genotype to survive and reproduce is a measure of its _______
|
Fitness
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|
Over _____ % of marriages occur between individuals who are born less than ____ miles apart!
|
30/10
|
|
As groups of people move from one area to another they change the allele frequencies of the populations they move into this is an example of changing allele frequencies due to _______
|
Migration
|
|
What is the term that means humans usually choose a mate who is similar to themselves
|
Non-random mating
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What is the term that means small groups of individuals may separate from a larger population and if their genetic makeup is not representative of the population then allelic frequencies will change?
|
Genetic drift
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Groups with a small number of original members show a profound _____ _____ (rare genes from those of the original members become amplified in the population)
|
Founder effect
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_____ _____ occur when large numbers of a population die leaving only a small number of individuals to reproduce.
|
Genetic bottlenecks
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|
What are 2 groups in the US with founder effects?
|
Amish and Mennonites of Lancaster County Pennsylvania
|
|
What is the advantage to heterozygotes with the sickle cell anemia gene?
|
Resistance to malaria
|
|
Regions of the world where there are high incidences of malaria also have high incidence of sickle cell heterozygotes. What is the term that describes this phenomenon?
|
Balanced polymorphism
|
|
What is the term for the advantage of one organism over its competitors that causes it to be favored in survival and reproduction rates over time?
|
Selective advantage
|
|
In what 2 diseases might we see selective advantage?
|
Sickle cell anemia, cystic fibrosis, glucose 6 phosphate dehydrogenase deficiency, prion diseases and PKU
|
|
What advantage does one who is heterozygous for he cystic fibrosis gene have?
|
Less susceptible to diarrheal diseases such as cholera and typhoid fever - may be way incidence of CF is higher in European populations
|
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What is the X linked recessive disease that is usually asymptomatic but some meds or foods can cause hemolytic anemia (most common enzyme deficiency in man!)
|
Glucose 6 phosphate dehydrogenase deficiency
|
|
What advantages does one who is heterozygous for the glucose 6 phosphate dehydrogenase deficiency disease have?
|
Resistance to malaria
|
|
What is a selective advantage for prion diseases?
|
Heterozygotes show resistance to the prion
|
|
Why did so many people not die in Papua New Guinea after practicing canibalism and eating infected brains?
|
High incidence of heterozygotes among their population
|
|
PKU heterozygotes have an elevated concentration of phenylalanine in their blood which may act to protect against a fungal toxin found in a ______ mould.
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WHEAT
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All of the genes in a population
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Gene pool
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Has different alleles
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Heterozygote
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Uses DNA evidence and population data to determine the likelihood of a match
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DNA profiling
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The equation that relates to gene frequencies?
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Hardy Weinberg Law
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When a population is reduced to a small number and then rebounds
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Bottleneck
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Alpha-benzopyrene is of concern because:
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It binds to DNA causing a frame shift
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Which amino acid appears in every third position in the protein collagen?
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Glycine
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Which repair system corrects errors arising during replication?
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Mismatch repair
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Which of the following mutations is a missense mutation? UUA to CUA, UU to UUC, UUC to UCC, UUA to UAA, UCU to UCC
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UUA to UAA - different amino acid (to change to STOP code is NONSENSE!)
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An example of a disease caused by a defect in DNA repair systems is : Xeroderma pigmentosum, Fragile X, Osteogenesis imperfecta, Diptheria or Huntington's?
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Xeroderma Pigmentosum
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Which of the following is aneuploidy: 1. 46,XX; 2. 69,XXX; 3. 47xx+21; 4. 45,X; Both 3 & 4
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Both 3 & 4 - change in the number of individual chromosomes
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How many barr bodies would be seen in the cells of a man with Klinefelters syndrome?
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1
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The dark staining regions of chromosomes containing highly repetetive sequences are termed:
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Heterochromatin
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Which of the following karyotypes is NOT considered lethal: 47,xx+16; 69,XXY; 45,Y; 45,X; 47,XY+2
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45,X - Turner's
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An individual with 46 chromosomes and a Robertsonian translocation between chromosomes 12 and 21 has which condition (be precise)
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Familial Down Syndrome
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If the carrier frequency for cystic fibrosis is 1:23 for Caucasians of European descent. What is the frequency of cystic fibrosis in this population?
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.05%
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Heterozygotes of this disease appear to be less susceptible to the effects of cholera
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Cystic fibrosis
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When many individuals in a population are lost leaving only a few to replenish the population this is described as a population ----
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Bottleneck
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All of the alleles in a population make up the _____ pool
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Gene
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The enzymes used to chop DNA into specific fragments are known as
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Restriction enzymes
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