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248 Cards in this Set

  • Front
  • Back
A mutation changes the __________ sequence of a gene
Nucleotide
Many mutagens are chemicals or forms of ___________
Radiation
T or F different mutations can cause the same disorder?
True
The effect of a particular mutation depends on where in the ________ the change occurs
Protein
Recessive mutations are generally associated with a loss/gain of function phenotype?
LOSS
Dominant mutations are generally associated with a loss/gain of function phenotype?
GAIN
DNA repair reduces the _________ rate
Mutation
Defects in DNA repair can cause a variety of disorders including _________
Cancer
What type of mutations occur during gamete formation and will be passed on to the offspring?
Germline mutations
What type of mutations occur in the tissues not passed on to offspring?
Somatic mutations
What type of mutations cause many types of cancer because they occur in the tissues?
Somatic mutations
What type of mutations have increased in the population and occur due to natural selection?
Advantageous
What was the first disease to be understood at the molecular level?
Sickle cell anemia
The difference between normal and sickle cell hemoglobin is one _________ in the beta chain
Amino acid
In sickle cell anemia, normally occuring ________ is replaced by ________
Glutamate/valine
The DNA change in sickle cell anemia is a single base change in the coding strand from G_G to G_G
GAG/GTG
What happens to the beta chains in sickle cell anemia under low oxygen conditions?
They stick together and form long fibers that deform the cells ("sickling")
What is the term that means damaged sickled blood cells have caused damage and pain to capillary beds resulting in a sickle cell crisis?
Hydroxyurea
In which race is sickle cell anemia most common?
African descent
Which amino acid (Valine/Glutamate) contains an acidic side chain?
Glutamate
Which amino acid (Valine/Glutamate) contains a hydrophobic side chain?
Valine
Name 5 places collagen is found
Bone, cartilage, skin, tendons, dentin
What three amino acids form collagen?
Glycine, hydroxyproline, and proline
Of the three amino acids in collagen, which one is the smallest?
Glycine
What is the disease caused by one glycine out of the hundreds of amino acids in collagen being replaced by alanine, resulting in weakened collagen?
Osteogenesis imperfecta
In the disease osteogenesis imperfecta, what is the amino acid that replaces a single glycine in the collagen that results in weakened collagen?
Alanine
What is another name for the collagen disorder Brittle Bone disease?
Osteogenesis imperfecta
What is the disease caused by a mutation that prevents procollagen from being processed into mature collagen?
Ehlers-Danlos syndrome
A substance that causes mutations is known as a ________
Mutagen
Mutations may arise __________ or be_________ by environmental causes
Spontaneously/ induced
Two normal parents have a child with achondroplasia. The genetic condition was not inherited, it arose ___ _______ in one of the gametes he developed from
De Novo (anew; afresh)
__________ mutation rates usually arise from errors in replication
Spontaneous
Larger/smaller genes have a higher spontaneous mutation rate
Larger
In 30% of DMD cases the mutation is __________ because the gene is very large. (Other cases are X-linked recessive)
spontaneous
Neurofibromatosis type 1 has a very high/low mutation rate
HIGH
What 2 types of mutations occur frequently at palindrome sequences?
Deletions and insertions
Mutations are likely to occur at ________ DNA sequences because they confuse the replication enzymes
Repetetive
Give an example of a disorder due to a mutation involving direct repeats
Alpha thalassemia
Give an example of a disorder due to a mutation involving repetetive DNA sequences
Alkaptonuria - CCC
Chemicals, environmental pollutants and medical treatments can all cause what type of mutation?
Induced mutation
Cells can repair most of the mutation damage from a _____ mrem dose of radiation
360
What is the term for chemicals that structurally resemble nucleotides and are incorporated into DNA or RNA and thus pairs with a different nucleotide than typically fits into that space
Base analogs
What is the environmental cause of mutations that changes a base for example a C to a G
Chemical modification of bases
What is an environmental factor that causes mutations by producing frame shifts?
Chemicals that bind to DNA
What is an example of a chemical that binds to DNA and causes a frame shift?
Alpha benzopyrene
What is the chemical found in cigarette smoke that is a flat molecule that can slip between base pairs of DNA and cause mutations?
Alpha benzopyrene
Chemicals that bind to DNA and cause a frame shift mutation are referred to as ________ agents
Intercalating
A change in a single DNA base is referred to as a _________ mutation
POINT
________ mutations do not change the code eg a mutation that changes UCU to UCG - still codes for serine
Silent
________ mutations change the genetic code to that of a different amino acid
Missense
Give an example of a disorder caused by a missense mutation
Sickle Cell Anemia - GAG mutates to GUG
What type of mutation changes codons for amino acids to STOP codons resulting in a shortened protein?
Nonsense mutations
Give 2 examples of a splice site mutation
BRCA1 produces a protein missing several amino acids due to exon skipping. Familial dysautonomia -exon skipping in a nervous system gene
What is the term that means a mutation has caused an exon to be missed out at splicing?
Exon skipping
Deletions and insertions may account for ____-____% of all known mutations
5-10%
What type of mutation would occur if UGC were changed to UGA?
NONSENSE MUTATION
What type of mutation would occur if UGU were changed to UGC?
SILENT MUTATION
If three bases were inserted into DNA would there be a frame shift?
NO
_________ genes are DNA sequences that are very similar to the protein encoding portion of a gene but are not translated and are most likely evolutionary "leftovers"
Pseudogenes
________ disease, a lysosomal storage disorder can result from crossover between the normal gene and the pseudogene
Gaucher disease
Jumping genes also known as _______ can interrupt a gene when they jump into it causing mutation
Transposons
Myotonic dystrophy shows anticipationdue to expansion of a CTG triplet. It is an example of a ______ _______ disorder
Triplet repeat disorder
What is the triplet repeat disorder caused by the DNA bending into hairpins which interfere with replication?
Fragile X
Triplet repeat disorders are described as _____ _____ _____ _____ _____ mutations as they cause something to happen that should not
Dominant toxic gain of function
Name 3 disorders due to triplet repeat gene expansions
Huntington's disease, fragile X, myotonic dystrophy
All cells have ______ systems to repair damaged DNA
Enzyme
________ repair corrects errors in replication
Mismatch repair
________ repair corrects damage due to UVB and oxidative damage
Nucleotide excision repair
______ repair corrects damage due to oxidative damage
Base excision repair
What is the rare autosomal recessive disorder in which individuals lack an efficient nucleotide excision repair system?
Xeroderma pigmentosum
In a child with xeroderma pigmentosum, why would they need to stay indoors and avoid exposure to the sun?
They do not have an efficient nucleotide excision repair system so damage from the sun is difficult to repair and early death from skin cancer is common
What is the incidence of xeroderma pigmentosum?
1:250,000
What is the term for the disease arising from a deficiency in DNA repair enzymes that results in dwarfism, mental retardation, failure to develop, scaly hair and rapid aging?
Trichothiodystrophy
What are the results caused by trichothiodystrophy a disorder arising from a deficiency in DNA repair enzymes?
Dwarfism, mental retardation, failure to develop, scaly hair and rapid aging.
What is the autosomal recessive disease resulting from a defect in a kinase enzyme involved in a cell cycle checkpoint?
Ataxia Telangiectasis (AT)
What are the complications arising from the disease ataxia telangiectasis?
Very high incidence of cancer, Diabetes, developmental problems and lung infections
What is the life expectancy of a patient with Ataxia Telangiectasis (AT)?
Death in late teens/early 20's
What is the incidence of ataxia telangiectasis?
1:40,000
Are heterozygotes of the ataxia telangiectasis gene rare?
NO - greater than 1.5% of the population are carriers
What is the increased risk to the heterozygote of the ataxia telangiectasis gene?
2-6 X's Increased risk of CANCER
What type of colon cancer is inherited?
Hereditary nonpolyposis colon cancer
How does hereditary nonpolyposis colon cancer occur?
In inherited gene that results in a defect in a mismatch repair enzyme located on chromosome 2
Is hereditary nonpolyposis autosomal dominant or recessive?
DOMINANT
What is the incidence of hereditary nonpolyposis?
Common - 1:200
A disease in which individuals have a high risk of cancer resulting from a defect in a kinase enzyme
Ataxia telangiectasis
Exon skipping in the BRCA 1 gene causes this disease
Breast cancer
Children develop multiple skin cancers with exposure to sunlight with this disease
Xeroderma pigmentosum
A triplet repeat disorder affecting men more than women
Fragile X
Shows a high spontaneous mutation rate due to the large size of the gene
Dystrophin gene causing DMD
A mutation such as GGG changed to GGA
SILENT
This would happen if two bases were added into a coding sequence
Frameshift
Adjacent bases that can form dimers when exposed to UV light
Thymine
This is an example of such a sequence GCTAGC
Palindrome
The smallest amino acid found in proteins
Glycine
What is the branch of genetics that links chromosome variations to specific traits?
Cytogenetics
What is the term for the addition or deletion of chromosomes that are responsible for a variety of disorders?
Chromosomal aneuploids
The structure of individual chromosomes can be affected by what 4 things?
Deletions, duplications, inversions, or translocations
Clinical cytogenetics is the study of __________
Chromosomes; their structure and inheritance
Cytogenetic disorders are present in nearly ____ of live births; ______% of pregnancies in women older than 35 and _____% of spontaneous first trimester abortions
1%; 2%; 50%
What are 4 indicators for chromosomal analysis in a child?
Problems of early growth and development such as: failure to thrive, developmental delay, ambiguous genitalia and/or mental retardation
What types of incidents are clinical indications for chromosomal analysis to allow accurate genetic counseling for future pregnancies?
Still birth and neonatal death, fertility problems, two or more miscarriages, family history of chromosomal abnormality in 1st degree relative, neoplasia and pregnancy in older women (over 35)
What percentage of parents with infertility or two or more miscarriages are found to have chromosomal abnormalities?
3-6%
Why is neoplasia in indication for chromosomal analysis?
Many cancers are associated with one or more chromosomal abnormalities
What are the 3 essential parts of the chromosome?
Telomere, centromere and origins of replication
What are the origins of replication in a chromosome?
Regions of DNA where replication forks start
Why are telomeres important?
They act as caps to keep the sticky ends of the chromosome from randomly clumping together
What is the purpose of the centromere?
Joins 2 sister chromatids to make up X shaped chromosome. Site where kinetochore is formed, point of attachment for spindle fibers
Approximately how many bases and what % of the genome are contained in chromosomes 21 and 22?
33 million - 1% of the genome
How many genes are contained on chromosome 21?
245
How many genes are contained on chromosome 22?
525
Which chromosome has a higher density chromosome 21 or chromosome 22?
22
What are the non-staining gaps on chromosomes called?
Fragile sites
Fragile X syndrome occurs when the code CGG is repeated more than ______ times so that the FMR-1 gene turns off & can not produce the protein that allows normal brain development
200
What is the gene involved in fragile X syndrome?
FMR-1 gene
What is the term for the dark staining on chromosomes that consists of highly repetitive sequences and is for the most part genetically inactive?
Heterochromatin
What is the lighter staining on chromosomes that harbors more protein encoding genes?
Euchromatin
A karyotype is an image of __________
The chromosomes of a single cell
Which is the largest of the chromosomes?
1
Chromosomes are numbered in order of size - which is the smallest?
23
Karyotypes are described by 5 things. What are they?
# of chromosomes, sex chromosome content, presence or absence of individual chromosomes, nature and extent of any abnormality, structural alterations
How would you translate the following description of a karyotype: 46,XY del(5p)
A male with a deletion in the short arm of chromosome 5 but otherwise chromosomally normal (deletion on chromosome 5 = 5 cri du chat syndrome)
How would you translate the following description of a karyotype: 47, XX+21
A female with an extra chromosome 21 otherwise chromosomally normal. Down's Syndrome
How would you translate the following description of a karyotype: 47, XX +18
A female with an extra chromosome 18 otherwise chromosomally normal. Edwards Syndrome
Less than ___% of newborns are born with chromosomal abnormalities. What does this tell us about chromosome abnormality?
1%/ most are not compatible with life
What is the term that means extra (full) sets of chromosomes are present?
Polyploidy
What is the term that means one extra set of chromosomes is present and is responsible for 17% of spontaneous abortions mostly due to 2 sperm cells fertilizing one egg?
Triploidy
What is the term that means there are 2 extra sets of chromosomes present and is responsible for 5% of spontaneous abortions due to a failure in cytokinesis in the first mitotic division?
Tetraploidy
What is the term for changes in the number of individual chromosomes?
Aneuploidy
What is the leading cause of aneuploidy?
Non disjunction at meiosis
What is the term for an extra individual chromosome?
Trisomy
What is the term that means an individual chromosome is missing?
Monosomy
Are any autosomal monosomies lethal?
ALL are lethal
What are the most common aneuploidies?
Trisomy 13,18,21 and an extra or missing X or Y chromosome
When a person is affected with aneuploidy or polyploidy the individuals exhibit ______ where a genetic or chromosomal abnormality occurs in some body cells
Mosaicism
In which chromosome is it common to see trisomies in embryos but is not seen in newborns which means it is not compatible with life?
Chromosome 16
Live births occur with trisomy of which 3 chromosomes?
13, 18, and 21
Trisomy 13 causes what syndrome?
Patau syndrome
Trisomy 18 causes what syndrome?
Edwards syndrome
Trisomy 21 causes what syndrome?
Down Syndrome
What is the incidence of Patau syndrome?
1:15,000
What is the incidence of Edwards syndrome?
1:11,000
What is the incidence of Down Syndrome?
1:900
What is the chromosomal anomaly that is usually lethal at a young age (mean survival 6 mos) causes multiple facial malformations, and severe malformation of the brain and heart?
Trisomy 13- Patau syndrome
What is the chromosomal anomaly that is usually lethal at a young age( survival 2-4mos), causes low birth weight, slow growth, mental retardation and heart malformations. 80% are female (males more likely to spontaneously abort)
Trisomy 18 - Edwards Syndrome
What are some of the characteristics of Down Syndrome?
Wide flat skull, large tongue, physical growth and mental development is retarded, 40% have congenital heart defects, level of function varies
In which trisomy syndrome are children very susceptible to infections and have a higher chance of leukemia?
Down Syndrome
What is the survival age of a person with Down Syndrome?
Sometime in the 5th decade of life
In which trisomy caused syndrome do older individuals develop amyloid plaques in the brain similar to those seen in Alzheimer disease?
Down Syndrome - Trisomy 21
What is the syndrome sometimes referred to as XO in which individuals have only one X chromosome?
Turner Syndrome
What is the incidence of Turner Syndrome?
1:2,000 births (99% fetuses die before birth
What is the phenotype of Turner's Syndrome?
Female, wide set nipples, webbing of neck, short stature, sexually immature, infertile, normal intelligence, often not dx'd till puberty when menstruation fails to occur
Many with Turner's syndrome are mosaics - what does this mean?
XO and XX - may be fertile but carries high risk of chromosomal abnormalities
Why is there no record of an individual without an X chromosome surviving?
The X chromosome carries genes essential for life
What is the disorder that occurs in 1:1000 women in which they display a taller stature, possible reduced mental ability and menstrual irregularities though they are usually fertile?
Triplo X - XXX
How many barr bodies would you expect to see in the cells of a woman with XXX genotype?
2
What is the disorder that occurs in 1:1000 males in which some individuals are underdeveloped sexually, lack secondary sexual characteristics, and may be slow learners?
Klinefelter Syndrome - XXY
What is the genotype forTurner's syndrome?
XO
What is the genotype for Klinefelter syndrome?
XXY
What is the genotype for Triplo X?
XXX
How many barr bodies would you expect to see in the cells of a man with Klinefelter syndrome?
ONE
Which syndrome afffects males only Turners or Klinefelters?
Klinefelters
Which syndrome affects females only Klinefelters or Triplo X
Triplo X
What is the disease also known as "super male"?
Jacob's syndrome
What is the incidence of Jacob's syndrome?
1:1000
What are some of the symptoms of Jacob's syndrome?
Greater height, higher levels of testosterone, acne is prevalent, normal sexual development, fertile
What is the genotype of someone with Jacob's syndrome?
XYY
What syndrome is associated with a large deletion of the short arm of chromosome 5 (the breakpoints vary but all lack band 15) and causes mental retardation?
Cri Du Chat Syndrome
Most cases of cri du chat syndrome are anticipated/sporadic?
Sporadic
Duplications are more likely to have an effect if the duplication is ______ and involves ______ genes. Only when _______ genes are involved do symptoms arise
Large/several/ several
What is the technology called that is used to detect deletions and duplications?
Fluorescence In Situ Hybridisation - FISH
What is the term that means regions of the chromosome are "flipped around"?
Inversions
What would happen to the gametes of an individual that is heterozygous for an inversion?
They will have abnormal chromosomes - unbalanced gametes
_________ occur when a chromosome segment is moved to another non homologous chromosome (chromosomes that are not members of the same pair)
Translocations
In which type of translocation (reciprocal/robertsonian) is not information lost but there may be gene disruption that can cause disease?
Reciprocal
Why would there be a tendency for pregnancies to end in spontaneous abortion in an individual who is a translocation carrier?
They will produce unbalanced gametes
What type of translocations (reciprocal/ Robertsonian) involves the loss of the short arms of 2 non homologous chromosomes leaving the centromeres to fuse?
Robertsonian
5% of _________ Syndrome cases involve a Robertsonian translocation between chromosomes 21 and 14
Down Syndrome
T or F It is possible for an individual to have Down Syndrome but not have 47 chromosomes
TRUE
How is it possible for an individual to have only 46 chromosomes and yet have Down Syndrome?
Robertsonian translocation - 14 and 21 fuse together - not true trisomy called translocation Down Syndrome or familial Down Syndrome.
What is the term that means non disjunction results in an individual inheriting both chromosomes from one parent?
Uniparental Disomy
A woman with only one X chromosome has this syndrome?
Turner's
This karyotype is 69, XXX
Triploid
Found at the end of a chromosome
Telomer
A change in the number of individual chromosomes
Aneuploidy
Cri Du Chat is caused by this
Deletion
When a chromosome segment is moved to another non homologous chromosome
Translocation
A disease resulting from a deletion on chromosome 5 short arm
Cri Du Chat
The individual with trisomy 21 has ______ Syndrome
Down
A _____ is a group of members of the same species in a given geographical area who are capable of mating and producing offspring
Population
The _____ _____ _____ was assembled from the DNA of 10 individuals
Human genome project
________ are more genetically diverse than ________ (pick one for each - populations/individuals)
Population/individuals
What is the term for the set of information carried in the population?
Gene pool
The allele _______ describes how often a particular allele appears in the gene pool of a particular population
Frequency
What is the most common allele for Cystic Fibrosis?
F508 allele
How is allele frequency in a population calculated?
from the occurrence of the persons with the disease plus the alleles carried in the heterozygotes
What is the name of the Law that relates the allele frequency?
Hardy Weinberg Law
What is the formula for the Hardy Weinberg Law?
P2+2pq+q2=1
In the Hardy Weinberg equation the individuals in the population with cystic fibrosis would be represented as? p,q,2pq,p2,q2
Q2
What is the frequency of sickle cell anemia in the black population if heterozygote frequency is 1/12?
1/12 X 1/12 = 0.0069 1:144 chance of affected child is 25% so 144 X 4 = 576
What is the term for molecular scissors or a protein that recognizes specific short nucleotide sequences and cuts DNA at those sites?
Restriction enzyme
How does DNA profiling work?
Detects copy number variants of very short repeated sequences found in the non-coding region of the genome.
What is the procedure of analyzing the DNA in samples of a person's body tissue or body fluid for the purpose of identification?
DNA profiling
If DNA differs in size by only one base is it possible for DNA profiling to recognize the difference?
YES
Hardy Weinberg Law has a number of assumptions list them
Large population, random mating, all genotypes have = ability to reproduce, no other factors to change allele frequency (no migration, mutation etc…)
Over time populations that drank milk accumulated moer _____ ____ alleles.
Lactose tolerant
What is the term that means differential reproduction of better adapted genotypes?
Natural selection
The ability of a certain genotype to survive and reproduce is a measure of its _______
Fitness
Over _____ % of marriages occur between individuals who are born less than ____ miles apart!
30/10
As groups of people move from one area to another they change the allele frequencies of the populations they move into this is an example of changing allele frequencies due to _______
Migration
What is the term that means humans usually choose a mate who is similar to themselves
Non-random mating
What is the term that means small groups of individuals may separate from a larger population and if their genetic makeup is not representative of the population then allelic frequencies will change?
Genetic drift
Groups with a small number of original members show a profound _____ _____ (rare genes from those of the original members become amplified in the population)
Founder effect
_____ _____ occur when large numbers of a population die leaving only a small number of individuals to reproduce.
Genetic bottlenecks
What are 2 groups in the US with founder effects?
Amish and Mennonites of Lancaster County Pennsylvania
What is the advantage to heterozygotes with the sickle cell anemia gene?
Resistance to malaria
Regions of the world where there are high incidences of malaria also have high incidence of sickle cell heterozygotes. What is the term that describes this phenomenon?
Balanced polymorphism
What is the term for the advantage of one organism over its competitors that causes it to be favored in survival and reproduction rates over time?
Selective advantage
In what 2 diseases might we see selective advantage?
Sickle cell anemia, cystic fibrosis, glucose 6 phosphate dehydrogenase deficiency, prion diseases and PKU
What advantage does one who is heterozygous for he cystic fibrosis gene have?
Less susceptible to diarrheal diseases such as cholera and typhoid fever - may be way incidence of CF is higher in European populations
What is the X linked recessive disease that is usually asymptomatic but some meds or foods can cause hemolytic anemia (most common enzyme deficiency in man!)
Glucose 6 phosphate dehydrogenase deficiency
What advantages does one who is heterozygous for the glucose 6 phosphate dehydrogenase deficiency disease have?
Resistance to malaria
What is a selective advantage for prion diseases?
Heterozygotes show resistance to the prion
Why did so many people not die in Papua New Guinea after practicing canibalism and eating infected brains?
High incidence of heterozygotes among their population
PKU heterozygotes have an elevated concentration of phenylalanine in their blood which may act to protect against a fungal toxin found in a ______ mould.
WHEAT
All of the genes in a population
Gene pool
Has different alleles
Heterozygote
Uses DNA evidence and population data to determine the likelihood of a match
DNA profiling
The equation that relates to gene frequencies?
Hardy Weinberg Law
When a population is reduced to a small number and then rebounds
Bottleneck
Alpha-benzopyrene is of concern because:
It binds to DNA causing a frame shift
Which amino acid appears in every third position in the protein collagen?
Glycine
Which repair system corrects errors arising during replication?
Mismatch repair
Which of the following mutations is a missense mutation? UUA to CUA, UU to UUC, UUC to UCC, UUA to UAA, UCU to UCC
UUA to UAA - different amino acid (to change to STOP code is NONSENSE!)
An example of a disease caused by a defect in DNA repair systems is : Xeroderma pigmentosum, Fragile X, Osteogenesis imperfecta, Diptheria or Huntington's?
Xeroderma Pigmentosum
Which of the following is aneuploidy: 1. 46,XX; 2. 69,XXX; 3. 47xx+21; 4. 45,X; Both 3 & 4
Both 3 & 4 - change in the number of individual chromosomes
How many barr bodies would be seen in the cells of a man with Klinefelters syndrome?
1
The dark staining regions of chromosomes containing highly repetetive sequences are termed:
Heterochromatin
Which of the following karyotypes is NOT considered lethal: 47,xx+16; 69,XXY; 45,Y; 45,X; 47,XY+2
45,X - Turner's
An individual with 46 chromosomes and a Robertsonian translocation between chromosomes 12 and 21 has which condition (be precise)
Familial Down Syndrome
If the carrier frequency for cystic fibrosis is 1:23 for Caucasians of European descent. What is the frequency of cystic fibrosis in this population?
.05%
Heterozygotes of this disease appear to be less susceptible to the effects of cholera
Cystic fibrosis
When many individuals in a population are lost leaving only a few to replenish the population this is described as a population ----
Bottleneck
All of the alleles in a population make up the _____ pool
Gene
The enzymes used to chop DNA into specific fragments are known as
Restriction enzymes