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21 Cards in this Set

  • Front
  • Back

cell

-structural unit of organisms


-all living things except viruses are made up of cells

3 major components of cells

1. PM: membrane that isolates the cell from the outside envmt


2. nuclear region: directs cellular activities, surrounded by nuclear membrane, contains majority of genetic material


3. cytoplasm: material between nuclear region and plasma membrane

types of cells/organisms

-determined based on structure of nuclear region:


1) prokaryotes: bacteria + relatives - genetic material in single circular DNA molecule with no nucleus or nuclear region; no nuclear membrane; DNA not highly condensed in cell division (not visible during cell division)


2) eukaryotes: contain a nucleus surrounded by a nuclear membrane; DNA contained in nucleus and located on chromosomes; organelles within cytoplasm

types of eukaryotic cells

1. animal
2. plant
-essentially the same except plants have vacuoles, chloroplasts, cell wall for structure

1. animal


2. plant


-essentially the same except plants have vacuoles, chloroplasts, cell wall for structure

eukaryote genes are found in:

1. nucleus (chromosomes)


2. mitochondria (circular prokaryotic)


3. chloroplasts (circular prokaryotic)


-mostly on chromosomes in nucleus

mitochondria & chloroplasts

-mitochondria: respiration


-chloroplasts: photosynthesis


-chloroplast genome larger than mitochondria genome


-mitochondria and chloroplasts divide by simple fission like bacterial cells (split in two)

endosymbiont hypothesis

-mitochondria and chloroplasts were once free-living organisms that were engulfed by a eukaryotic cell and began a symbiotic relationship

genetic material in prokaryotic and eukaryotic organisms

-deoxyribonucleic acid (DNA)


-responsible for inheritance of characteristics from mother cell to daughter cells or parent to offspring

characteristics of functional DNA

1. chemical complexity and stability: to encode and store genetic info


2. accurately replicate: offspring receive identical copes, no mutations


3. expression of genes/traits


4. ability to slowly mutate: genetic diversity, adaptability to changing environment (contrasts with first two)


*"know these bullets"*

genetic material in some viruses

-ribonucleic acid (RNA)


-viruses may be RNA or DNA based


-e.g. Tobacco Mosaic Virus (TMV): purified RNA spread on tobacco leaves results in lesions

Fraenkel-Conrat & Singer experiment

-1956
-question: what substance (RNA or protein) carries the genetic material in TMV?
-Type A + Type B = two different strains

-Type A RNA mixed with Type B protein to create hybrid: hybrid = RNA A + protein A
-Type B RNA mixed with Type A protei...

-1956


-question: what substance (RNA or protein) carries the genetic material in TMV?


-Type A + Type B = two different strains


-Type A RNA mixed with Type B protein to create hybrid: hybrid = RNA A + protein A


-Type B RNA mixed with Type A protein to create hybrid: hybrid = RNA B + protein B


-conclusion: RNA was genetic material of TMV


-the source of the RNA always determines the type of TMV that you obtain

structure of RNA and DNA

-RNA and DNA are linear polymers of nucleotides


-nucleotides consist of:


1. deoxyribose/ribose: pentose (5 C) sugar


2. a phosphate group (on 5' carbon)


3. a nitrogenous base: purine or pyrimidine


-double-ringed purines: A + G


-single-ringed pyrimidines: C + T (DNA) + U (RNA)

pentose sugars

-phosphate group on 5'
-hydroxyl group on 3'
-nitrogenous base on 1'

-differ in an O on 2'

-phosphate group on 5'


-hydroxyl group on 3'


-nitrogenous base on 1'


-differ in an O on 2'

building a nucleotide

-each N base is linked on deoxyribose at 1' carbon = nucleoside (base + sugar)
-phosphate group then attached to 5' carbon of nucleoside = nucleotide (base + sugar + phosphate group)
-pic: left = ribose, right = deoxyribose, note N base attached a...

-each N base is linked on deoxyribose at 1' carbon = nucleoside (base + sugar)


-phosphate group then attached to 5' carbon of nucleoside = nucleotide (base + sugar + phosphate group)


-pic: left = ribose, right = deoxyribose, note N base attached at 1' and P group at 5'

building a polymer or polynucleotide chain

-nucleotides are then joined together by phosphodiester bonds to form a polynucleotide chain
-one end is the 5' end: 5'-P
-other end is 3' end: 3'-OH

-nucleotides are then joined together by phosphodiester bonds to form a polynucleotide chain


-one end is the 5' end: 5'-P


-other end is 3' end: 3'-OH

Chargaff's Rules

-1940s

1. the base composition of a DNA molecule has an equal amount of purines as pyrimidines in a given individual (%C=%G, %A=%T)


2. the composition of bases differs between species but remains constant within an organism

discovery of double helix

-Franklin & Wilkins: characterized shape of DNA molecule using X ray diffraction, data indicated DNA was helical (found best pic of DNA shape)


-Watson & Crick: first to construct an accurate model of DNA accounting for A-t and G-C base correlation and helical arrangement (looked at pic and determined it was a double helix)


-first 3-D model was built with wire and paper: two chains of DNA, oriented in opposite directions and coiled around a central axis to form a right-handed double helix

features of the double helix

1. two strands run in opposite directions and are complementary (A db T, C tb G) 

-weak H bonds hold two complementary strands together (but between nucleotides, strong phosphodiester covalent bond)

2. double helix makes a right-hand turn
3. DNA...

1. two strands run in opposite directions and are complementary (A db T, C tb G)


-weak H bonds hold two complementary strands together (but between nucleotides, strong phosphodiester covalent bond)


2. double helix makes a right-hand turn


3. DNA sequence is unrestricted: unlimited in terms of codes possible to produce proteins (only 4 bases but many diff combinations)


4. forms minor and major grooves within DNA structure


-various proteins packed into these grooves to protect/provide structure to DNA molecules

DNA structure

-labeled at 3' and 5' ends
-typically drawn as horizontal ladder (base pairs = rungs, sugar/phosphate backbone)
-oriented 5' to 3' (coding strand = top strand, complementary strand = bottom strand)
-5' end is phosphorylated
-3' end has hydroxyl group

-labeled at 3' and 5' ends


-typically drawn as horizontal ladder (base pairs = rungs, sugar/phosphate backbone)


-oriented 5' to 3' (coding strand = top strand, complementary strand = bottom strand)


-5' end is phosphorylated


-3' end has hydroxyl group

differences between RNA and DNA

-RNA: ribose sugar, uracil, single stranded, chemically less stable


-DNA: deoxyribose sugar, thymine, double helix, chemically more stable


-RNA less stable b/s single stranded and b/c hydroxyl group makes more reactive

roles of RNA

1. genetic code of certain viruses
2. involved in gene expression (major role): mRNA, snRNA, tRNA, rRNA
3. involved in gene regulation (faster/slower rate): miRNA, siRNA
4. discovery of catalytic RNA molecules (ribozymes) led to hypothesis that li...

1. genetic code of certain viruses


2. involved in gene expression (major role): mRNA, snRNA, tRNA, rRNA


3. involved in gene regulation (faster/slower rate): miRNA, siRNA


4. discovery of catalytic RNA molecules (ribozymes) led to hypothesis that life may have started with RNA as the genetic material


- single stranded


-still 5'-P to 3'-OH


-U instead of T


-unique structures possible