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73 Cards in this Set

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Metabolism

Is the totality of an organisms chemical reactions

Emergent property of life

Metabolic pathways

Begins with a specific molecule and ends with a product

Catabolic pathways

Release energy by breaking down complex molecules into simpler compounds

Cellular respiration, breakdown of glucose in the presence of oxygen

Anabolic pathways

Consume energy to build complex molecules from simpler ones

Bioenergetics

Is the study of how energy flows through living organisms

Energy

Is the capacity to cause change

Kinetic energy

Is energy associated with motion

Thermal energy

Is the kinetic energy associated with random movement of atoms and molecules.

Heat is thermal energy in transfer between objects

Potential energy

Is energy that matter possesses because of its location or structure

Chemical energy

Is potential energy available for release in a chemical reaction

Thermodynamics

Is the study of energy transformations

Isolated system

Is unable to exchange energy or matter with its surroundings

Open system

Energy and matter can be transferred between the system and its surroundings

Organisms are open systems

First law of thermodynamics

Energy can be transferred and transformed, but it cannot be created or destroyed

Principle of conservation of energy

Second law of thermodynamics

During every energy transfer or transformation, some energy is unusable and is often lost at heat

Every energy transfer or transformation increases the entropy of the universe

Entropy

Is a measure of molecular disorder, or randomness

Spontaneous process

Occur without energy input; they can happen quickly or slowly

Must increase the entropy of the universe

Free energy

Is energy that can do work when temperature and pressure are uniform, as in a living cell

Measure of a systems instability

Enthalpy

Change in total energy (^H) heat released or absorbed during a reaction

Entropy (^S)

Degree of disorder

^G < 0

The reactant goes to product. Reaction is spontaneous

^G > 0

Reaction will not go to the product. Additional energy is required for reaction to proceed

^G = 0

Reaction is at equilibrium. Half of the reactants will go to product.

Equilibrium

Is a state of maximum stability

During a spontaneous change ..

Free energy decreases and the stability of a system increases

Exergonic reaction

Proceeds with a net release of free energy and is spontaneous

(-^G): Catabolism

Endergonic reaction

Absorbs free energy from its surroundings and is non spontaneous

(+^G): Anabolism

Cells are not _____, they are _____

Equilibrium, open systems

Chemical work of a cell

Pushing endergonic reactions

Transport work of a cell

Pumping substances against the direction of spontaneous movement

Mechanical work of a cell

Such as contraction of muscle cells

Energy coupling

The use of an exergonic process to drive an endergonic one.

Cells manage resources by ______.

ATP (adenosine triphosphate)

Cells energy shuttle which is composed of ribose (sugar), adenine (a nitrogenous base), and three phosphate groups

Can be broken by hydrolysis

Coupled reactions are _____.

Exergonic

ATP drives endergonic reactions by _______, transferring a phosphate group to some other molecule, such as reaction.

Phosphorylation

Phosphorylated intermediate

The recipient molecule

ATP hydrolysis leads to a change in _______ and _______.

Protein shape and binding ability

The energy to phosphorylate ADP comes from _________ in the cell.

Catabolic reactions (exergonic breakdown reactions)

The active site can lower an Ea barrier by which four things?

-orienting substrates correctly


-straining substrate bonds


-providing a favorable micro environment


-covalently bonding to the substrate

The rate of an enzyme-catalyzed reaction can be sped up by _____________.

Increasing substrate concentration

If the enzyme is saturated, the reaction rate can only sped up by _________.

Adding more enzyme

An enzymes activity can be affected by which two things ?

-temperature and pH


-chemicals that specifically influence the enzyme

The ATP cycle is the shuttling of ______ and ______. It couples the cells exergonic processes to endergonic processes.

Inorganic phosphate and energy

Catalyst

Is a chemical agent that speeds up a reaction without being consumed by the reaction

Enzyme

Is a catalytic protein

Activation energy

The initial energy needed to start a chemical reaction

In catalysis, enzymes or other catalysts speed up specific reactions by _________ without being consumed.

Lowering the Ea barrier

Substrate

The reactant that an enzyme acts in

The enzyme binds to its substrate, forming an _________.

Enzyme-substrate complex

Active site

Is the region on the enzyme where the substrate binds

A ________ of a substrate brings chemical groups of the active site into positions that enhance their ability to catalyze the reaction.

Induced fit

Optimal temperature for typical human enzyme is ___.

37c

Optimal temperature for enzyme of thermophilic (heat-loving) bacteria is ____.

75c

Cofactors

Are non protein enzyme helpers

Inorganic (metal in ionic form)

An organic cofactor is called a ______.

Coenzyme

Include vitamins

Inhibitors attach to enzymes by what type of bonds?

Covalent bonds

Competitive inhibitors

Bind to the active site of an enzyme, competing with the substrate

Non competitive inhibitors

Bind to another part of an enzyme, causing the enzyme to change shape and making the active site less effective.

A cell regulates metabolic pathways by ________ that encode specific enzymes or by regulating the activity of enzymes.

Switching on or off genes

Allosteric regulation

May either inhibit or stimulate an enzymes activity

Occurs when a regulatory molecule binds to a protein at one site and affects the proteins function at another site.

Cooperativity

Is a form of allosteric regulation that can amplify enzyme activity

Complex contains inactive and active forms

Feedback inhibition

The end product of a metabolic pathway shuts down the pathway. Prevents a cell from wasting chemical resources by synthesizing more product

Most allosterically regulated enzymes are made from ________.

Polypeptide subunits

Chemical energy is a form of _____ energy.

Potential

In your body, what process converts the chemical energy found in glucose into the chemical energy found in ATP?

Cellular respiration

What are the by products of cellular respiration?

Heat, carbon dioxide, and water

In exergonic reactions the products have _________ energy than the reactants.

Less Potential energy

The products of endergonic reactions have _______ energy than the reactants.

More potential energy

ADP + P —> ATP is an _____ reaction.

Endergonic

The energy for an endergonic reaction comes from an ______ reaction.

Exergonic

What is the fate of the phosphate group that is removed when ATP is converted to ADP?

It is acquired by a reactant in an endergonic reaction

Bioluminescence

Convert energy to light

Usually an ______ forms a covalent bind with an amino acid side group within the active site, which prevents the substrate from entering the active site or prevents catalytic activity

Irreversible