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161 Cards in this Set
- Front
- Back
Characteristics of life
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Complex, organized structure
Response to stimuli - a change outside (or inside) leads to another change Homeostasis - the ability to maintain the structure and regulate the internal environment. Ability to acquire material and energy -The material and energy are often transformed Growth Reproduction - either sexual or asexual DNA is genetic information, the “blueprint” for the offspring Ability to evolve - to change to fit the environment |
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ecosystem
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A community together with its nonliving souroundings
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community
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two or more populations of different species living and the interaction in the same area
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species
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very similiar, potentially interbreeding organisms
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population
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members of one species inhabiting the same area
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muticellular organisms
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an indivisual living thing composed of many cells
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organ system
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two or more organs working together in the execution of a specific bodily function
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organ
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a structure usually composed of several tissue types that form a functional unit
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tissue
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a group of similiar cells that perform a specific function
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cell
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the smallest unit of life
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organelle
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a structure within a cell that performs a specific function
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molecule
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a combination of atom
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atom
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the smallest particle of an element thet retains the properties of the element
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subatomic particle
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particles that make up an atom
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stimuli
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Organisms react to external and internal stimuli.
Some reactions are slow and can’t be seen. |
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homeostasis
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the ability to maintain the structure and regulate the internal environment.In order to stay alive and function, organisms must keep the conditions within their bodies fairly constant.
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Ability to acquire material and energy
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The material and energy are often transformed .
Energy is used to maintain a high level of complexity and organization, to grow, and to reproduce. |
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heterotrophs
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Organisms can take in nutrients (food) for raw materials and energy
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autotrophs
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Or they can use sunlight for energy (photosynthesis) to produce energy-rich sugar molecules
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Metabolism
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is basically the sum total of all of the chemical reactions that occur within an organism.
Metabolism changes the raw material and energy into the forms which are needed for maintenance, growth, reproduction, etc . |
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evolution
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If the environment changes, then the population of organisms must change to fit the environment or face the possibility of extinction.
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mutation
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The evolutionary changes are usually slow, taking several generations and occur by the accumulation of DNA changes known as
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domains
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Each of the major organizational groups are called
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There are two prokaryotic domains;
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Bacteria and Archaea and a eukaryotic domain; Eukarya.
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kingdom
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Within the domains are at least 6 groups known as
Each kingdom has different attributes which define them. |
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prokaryotes
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-no nucleus or nuclear envelope
-genetic material in a "nucleoid region" -no organelles or internal membranes |
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Eukaryotes
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-nucleus w/ a nuclear envelope
-genetic material within the nucleus -contains cytosol with membrane-bound organelles |
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bacteria-cell type, cell #, nutritional Method
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prokaryotic
unicellular absorb/photo |
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Archaea- Cell type, Cell #, NM
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Pro
Uni absorb/photo |
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protista- ct, c#, NM
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eukary
uni absorb/photo |
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fungi-ct,c#, NM
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eukary
multi absorb |
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plantae-ct, c#, NM
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eukary
multi photo |
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animalia-ct, c#, NM
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eukary
multi ingestion |
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The 3 most stable subatomic particles are
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neutrons, protons, and electrons
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protons
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are positively charged particles found at the core, or nucleus, of the atom
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neutrons
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are uncharged particles found at the core, or nucleus, of the atom.
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electrons
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are light, negatively charged particles that orbit around the nucleus in electron shells
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element
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is a substance that can’t be broken down into other substances by chemical reactions
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atomic weight
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of an element is the number of protons plus the number of neutrons
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isotopes
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Isotopes are atoms of the same element which have different atomic weights (diff # pf protons and neutons)
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electron orbitals
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are the three-dimensional space around the nucleus of an atom where an electron will be found 90% of the time
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The electron orbitals of an atom are arranged in _______ based on their ________.
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electron shells
energy level |
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An atom with an incomplete (partially full) electron shell is ______ whereas an atom with a full electron shell is ____, or not chemically active
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reactive
inert |
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chemical behavior of an atom is determined by
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the number of electrons in the outermost electron shell
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A chemical bond
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is an attraction that holds two atoms together
A reactive atom will try to fill the valence shell by interacting with other atoms |
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a molecule
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is two or more atoms held together by chemical bonds
The smallest unit that retains the physical and chemical properties of a compound |
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ions
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is a charged atom or molecule. It is charged because it has either lost or gained electrons
If an atom has an almost empty or an almost full outer electron shell it is more likely to form an ion. |
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anion
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is a negatively charged atom or molecule. It has gained an electron
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cation
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is a positively charged atom or molecule. It has lost an electron
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A chemical bond is formed through
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The gaining, losing, or sharing of electrons
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After sodium loses an electron, it is
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positive ion.
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After chlorine gains an electron, it is
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A negative ion
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ionic compounds
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Ionic compounds are called salts and usually form crystals as a solid.
Ionic bonds are strong in crystals but break easily in water. |
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covalent bond
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is a bond formed when two atoms share pairs of electrons.
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nonpolar covalent bond
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ex H gas
same charge on both nuclei electrons spend equal time near each nucleus covalent bond is a covalent bond in which the sharing of the electron pair is equal |
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polar covalent
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covalent bond is a covalent bond in which the sharing of the electron pair is unequal.
ex.water |
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electronegativity
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defined as an atom’s ability to attract and hold electrons. Assigned a numerical value. The higher the #, the more electronegative an atom is
Hydrogen = 2.2 Carbon = 2.6 Nitrogen = 3.0 Oxygen= 3.4 Atoms with higher electronegativity have a more positively-charged nucleus, and will hold onto the electron pair more strongly than atoms with significantly lower electronegativity. |
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hydrogen bond
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is formed by the charge attraction when a hydrogen atom which is covalently bonded to one atom is attracted to a second atom.
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What kind of bonds form between water molecules?
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hydrogen
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hydrophillic
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describes the property of having an affinity for water. easily dissolves in water
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hydrophobic
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describes the property of not having an affinity for water
Nonpolar substances The polarity of water molecules makes water a poor solvent for molecules which do not have charged regions |
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hydrophobic interaction
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hydrophobic molecules clump together in water because of
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Water Molecules Tend To Stick Together
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Water has cohesive behavior which is the result of hydrogen bonding between the water molecules and the other molecules and includes cohesion, andsurface tension.
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COHESION
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Attraction between like molecules
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Surface Tension
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cohesion among water molecules at the surface of water
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>>>Acids and basesWater molecules can
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dissociate
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hydrogen atom of one water molecule leaves its electron behind and forms a
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hydrogen ion (H+) and a hydroxide ion (OH-)
dissociate |
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In pure water
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the number of H+ ions = the number of OH- ions
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If the solution is acidic
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then the number of H+ ions is greater than the number of OH- ions.
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solution is basic
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if the number of OH- ions is greater than the number of H+ ions
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An acid is a proton
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proton donor, or a substance which increases the concentration of H+ in a solution.
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base is a proton
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acceptor, or a substance which reduces the concentration of H+ in a solution
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pH scale
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is a scale used to measure the acidity of solutions.
The scale ranges from 0 to 14. For a neutral solution pH = 7 For an acidic solution pH < 7 For a basic solution pH > 7 |
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Because the pH scale is a logarithmic scale
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a change of one pH unit represents a tenfold change in the concentration of H+.
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Most biological solutions are between
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pH 6 and pH 8
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Buffers
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are substances that prevent large, sudden changes in pH.
Buffers are combinations of H+ donors and H+ acceptors Buffers function by accepting H+ ions from solution when they are in excess, and donating H+ ions to the solution when the supply is depleted. Example: Bicarbonate buffer |
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Three properties of water help keep temperature stable:
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1) High specific heat
2) High heat of vaporization 3) High heat of fusion |
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Specific heat
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is the amount of energy that must be absorbed or lost for one gram of matter to change its temperature by one degree Celsius.
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Vaporization (evaporation
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is the transformation of matter from a liquid to a gas.
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Heat of vaporization
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is the quantity of heat a liquid must absorb for 1 gram to be converted to the gaseous state, or to evaporate.
-Leads to cooling of the surface of a liquid when during evaporation. |
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Water has a high heat of fusion
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Water has a high heat of fusion and freezes much slower than other liquids.
When water freezes, it forms an unusual solid, Ice which floats. |
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Organic molecules
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are molecules containing carbon
except water |
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carbon atoms
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Carbon atoms are the most versatile building blocks of molecules
Carbon has a valence of 4. Can bind to 2, 3, or 4 other atoms. |
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Functional groups
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are small characteristic groups of atoms which are frequently bonded to the carbon skeleton of organic molecules.
Another factor which leads to the versatility of organic molecules Have specific chemical and physical properties. Are regions of organic molecules which are frequently chemically reactive. Behave consistently from one organic molecule to another. Can determine the chemical properties of the organic molecule in which they are located. |
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Hydroxyl group
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---Hydroxyl group is a functional group of a hydrogen atom bonded to an oxygen atom which is bonded to a carbon atom (of the carbon skeleton).
Is a polar group -Involved in condensation (dehydration) and hydrolysis reactions |
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carbonyl group
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Polar functional group.
Extremely hydrophilic. Makes parts of a molecule water soluble. |
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Carboxyl group
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Carboxyl group is a functional group in which a carbon atom is double bonded to an oxygen atom (like a carbonyl) and is also single bonded to the oxygen atom of a hydroxyl group.
Since this group can donate a proton, it is acidic -Involved in peptide bonds between amino acids -Since this group can donate a proton, it is acidic -Involved in peptide bonds between amino acids |
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Amino groups
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Amino groups are functional groups in which two hydrogen atoms are bonded to a nitrogen atom which is bonded to a carbon atom (of the carbon skeleton).
-Acts as a weak base (similar to ammonia) because it accepts protons. -Involved in peptide bonds between amino acids |
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sulfhydryl (forms, found in)
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Forms disulfide bonds within and between proteins.
Found in numerous proteins in biological systems. |
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A peptide bond forms between which two functional groups?
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Carboxyl and amino
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Phosphate group
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Phosphate group is a functional group which is the dissociated form of phosphoric acid (H3PO4)
Acts as an acid because of the ability to donate protons. -Links nucleotides together to form nucleic acids -Important in cellular energy storage and energy transfer. Example: ATP |
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Biological molecules are often put together in
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Biological molecules are often put together in subunits, or modules, called monomers.
---the simple molecules combined to form more complex ones ---monomers into polymers |
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Polymers
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are chains of similar building blocks or monomers.
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-A Monomer
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is a subunit (or building block) of a polymer.
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The reaction that forms a polymer from monomers is
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The reaction that forms a polymer from monomers is a dehydration synthesis (or condensation reactions).
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Dehydration synthesis
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is a reaction in which the covalent linkage of the monomers is accompanied by the “removal” of a water molecule.
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Hydrolysis
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is the breaking of the covalent bond between two monomers by the addition of water.
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Carbohydrates
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are used as fuels and building material
Carbohydrates are organic molecules made of sugars and their polymers. Carbohydrates are classified by the number of simple sugars. |
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monosaccharides.
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Monomers are simple sugars
carbohydrate Monosaccharides are simple sugars in which carbon, hydrogen, and oxygen occur in the ratio of 1-2-1 for C, H, and O. Major source of nutrients for cells. -Glucose is the most common -Can be produced by photosynthetic organisms from CO2, H2O, and light |
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Monosaccharides can be joined to form
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disaccharides and polysaccharides
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Disaccharides
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are molecules which consist of two monosaccharides joined by a glycosidic linkage.
maltose lactose sucrose |
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Glycosidic linkage
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is a covalent bond formed by a dehydration synthesis between two sugar monomers.
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Each carbon has a hydroxyl group attached to it except one which is a
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carbonyl group.
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In aqueous solutions
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monosaccharides with 5 or more carbons in the skeleton form ring structures.
The chemical equilibrium favors the ring structure over the straight chain |
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Polysaccharides
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are macromolecules that are polymers of a few hundred or thousand monosaccharides.
Formed by enzyme-mediated condensation reactions. -Biological functions Energy storage(starch and glycogen) (see fig 3-3) Structural support (cellulose and chitin) (see figs 3-4 and 3-5) Formed by enzyme-mediated condensation reactions. -Biological functions Energy storage(starch and glycogen) (see fig 3-3) Structural support (cellulose and chitin) (see figs 3-4 and 3-5) |
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Storage polysaccharide
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Stored sugars can be hydrolyzed as needed. Stored in muscle and liver.
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-Starch
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is a glucose polymer that is used as a storage polysaccharide in plants.
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---Glycogen
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is a glucose polymer that is used as a storage polysaccharide in animals.
If there is more glucose in your bloodstream than your body needs, the excess glucose is linked together and stored as glycogen in your muscles and liver. When energy is needed, glycogen is quickly broken down to release glucose into the bloodstream for short-term energy needs. Once glycogen stores are full, excess glucose gets converted to fat for long-term energy needs. |
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Carb-loading
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A process by which athletes are able to double or triple the amount of glycogen stored in their muscles. Used to delay the onset of muscle fatigue.
2 phase process: Depletion phase- about a week before competition. Extremely low-carb diet and rigorous exercise. Loading phase -2 days before competition. Super high-carb diet and no exercise. Achieves a blood glucose level that is higher than necessary, so excess glucose gets converted to glycogen. |
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Water Weight
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The first stages of any diet usually involve rapid and dramatic weight loss.
Water is heavy 4-ounces to each molecule Glycogen is nonpolar and does not deplete as fast (fat) This is because glycogen is being depleted in the muscles and liver as caloric intake is reduced. Every ounce of glycogen in the body can have as much as four ounces of water bound to it. |
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Structural polysaccharides include
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cellulose and chitin
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-Cellulose
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is a linear unbranched polymer of glucose
most abundant organic molecule on the planet. -differs from starch in the type of linkage -different linkage gives different three-dimensional structure. -cellulose reinforces plant cell walls. |
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Hydrogen bonds
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hold the cellulose strands together-cellulose cannot be digested by most animals because they lack the enzyme that can hydrolyze the linkage in cellulose.
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Chitin
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is a structural polysaccharide that is a polymer of an amino sugar.
forms the exoskeleton of arthropods (insects, crawfish, etc.) -found in the cell walls of some fungi. |
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Lipids
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are mostly nonpolar hydrophobic molecules composed mainly of carbon and hydrogen
Lipids are a diverse group of organic molecules that are insoluble in water, but will dissolve in nonpolar solvents (e.g., ether, chloroform, benzene) |
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-Important lipids are grouped into 3 types:
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1) fats, oils, and waxes2) phospholipids3) steroids.
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Oils, Fats and Waxes
Characteristics: |
-composed of carbon, hydrogen and oxygen
-contain 1 or more fatty acids -usually no ring structure |
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--Fats and oils are
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macromolecules constructed from fatty acids and glycerol.
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---Glycerol
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is a three-carbon molecule with one hydroxyl group per carbon.
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Fatty acids (FA) are
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hydrocarbon chains with a carboxyl group at one end
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The hydrocarbon chain
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or tail, is hydrophobic and not water soluble.
-The tail has a long carbon skeleton usually with an even number (16-18) of carbon atoms. -The carboxyl group, or head, has the properties of a carboxylic acid. The FA group is linked through the head to the glycerol and each hydroxyl group on the glycerol can form a linkage with a fatty acid. |
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Triglyceride
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is a fat composed of three fatty acids bonded to one glycerol by
ester linkages. |
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Function of fats and oils:
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Energy storage.
One gram of fat stores twice as much energy in its chemical bonds as one gram of polysaccharide. -Because of the higher energy per gram, energy storage is more compact with fats and oils than with carbohydrates. |
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Olestra
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Fake Fat”-designed to be similar to fats in taste and texture.
Cannot be digested by humans. Instead of being a triglyceride with 3 fatty acids linked to a glycerol, it has 8 fatty acids attached to a molecule of sucrose. It still stimulates the taste buds on your tongue that tell your brain that you are eating fat. But because the molecule is so complex in shape, it prevents your body’s digestive chemicals from grabbing onto it and breaking it down. Passes through your digestive system without being digested. |
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Fats
Humans store fat in Fat also insulates Fats exist as 2 main types |
adipose tissue cells, which swell and shrink as fat is added to, or taken from them.
the body and protects vital organs. : saturated and unsaturated. |
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SATURATED
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No double bonds between carbons
Maximum number of hydrogen atoms bonded to the carbon of the skeleton (saturated) Usually solid at room temperature Most animals store fats |
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UNSATURATED
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One or more double bonds between carbons
Chain kinks at each double bond, so individual chains cannot pack close enough together to solidify easily. Usually liquid at room temperature Most plants store oils |
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Waxes (linked to?,found in)
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are similar to fats and oils except the fatty acids are linked to large, long chain alcohols instead of glycerol.Waxes are found in plants where waterproofing is needed and are used to build structures (i.e., beehives)
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--Phospholipids
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are compounds with molecular building blocks of glycerol, two
fatty acids, a phosphate group and usually a small chemical group attached to the phosphate group. Phospholipids have 2 ends that behave completely differently in water. Hydrophilic heads and hydrophobic tails. When phospholipids are added to water, they self-assemble into a bi-layer that shield their hydrophobic portion from water. |
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Steroids
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Class of lipids that includes many hormones.
Characterized by a carbon skeleton consisting of 4 fused rings with various functional groups attached. Includes cholesterol, a component of animal cell membranes. Used as a molecular precursor for many steroids |
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Proteins
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are the molecular tools for most cellular functions.-Proteins are polymers of amino acids arranged in a specific linear sequence and are linked by peptide bonds.
Range in length from a few monomers to more than a thousand.-Each protein has a unique linear sequence of amino acids -Proteins are abundant, making up 50% (or more) of some cells dry weight. |
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Amino acids are joined into chains by
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dehydration synthesis
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Peptide bonds
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are covalent bonds formed by a dehydration synthesis that links the carboxyl group of one amino acid to the amino group of
another amino acid. |
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Four levels of protein structure
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Primary structure
Secondary structure Tertiary structure Quaternary structure (when a protein has more than one polypeptide chain) |
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-Important lipids are grouped into 3 types:
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1) fats, oils, and waxes2) phospholipids3) steroids.
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Oils, Fats and Waxes
Characteristics: |
-composed of carbon, hydrogen and oxygen
-contain 1 or more fatty acids -usually no ring structure |
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--Fats and oils are
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macromolecules constructed from fatty acids and glycerol.
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---Glycerol
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is a three-carbon molecule with one hydroxyl group per carbon.
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Fatty acids (FA) are
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hydrocarbon chains with a carboxyl group at one end
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The hydrocarbon chain
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or tail, is hydrophobic and not water soluble.
-The tail has a long carbon skeleton usually with an even number (16-18) of carbon atoms. -The carboxyl group, or head, has the properties of a carboxylic acid. The FA group is linked through the head to the glycerol and each hydroxyl group on the glycerol can form a linkage with a fatty acid. |
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Triglyceride
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is a fat composed of three fatty acids bonded to one glycerol by
ester linkages. |
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Function of fats and oils:
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Energy storage.
One gram of fat stores twice as much energy in its chemical bonds as one gram of polysaccharide. -Because of the higher energy per gram, energy storage is more compact with fats and oils than with carbohydrates. |
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Olestra
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Fake Fat”-designed to be similar to fats in taste and texture.
Cannot be digested by humans. Instead of being a triglyceride with 3 fatty acids linked to a glycerol, it has 8 fatty acids attached to a molecule of sucrose. It still stimulates the taste buds on your tongue that tell your brain that you are eating fat. But because the molecule is so complex in shape, it prevents your body’s digestive chemicals from grabbing onto it and breaking it down. Passes through your digestive system without being digested. |
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Fats
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Humans store fat in adipose tissue cells, which swell and shrink as fat is added to, or taken from them.
Fat also insulates the body and protects vital organs. Fats exist as 2 main types: saturated and unsaturated. |
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SATURATED
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No double bonds between carbons
Maximum number of hydrogen atoms bonded to the carbon of the skeleton (saturated) Usually solid at room temperature Most animals store fats |
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UNSATURATED (bonds,solid or liquid, ex)
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One or more double bonds between carbons
Chain kinks at each double bond, so individual chains cannot pack close enough together to solidify easily. Usually liquid at room temperature Most plants store oils |
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Waxes
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are similar to fats and oils except the fatty acids are linked to large, long chain alcohols instead of glycerol.Waxes are found in plants where waterproofing is needed and are used to build structures (i.e., beehives)
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--Phospholipids(building blocks of, 2 ends)
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are compounds with molecular building blocks of glycerol, two
fatty acids, a phosphate group and usually a small chemical group attached to the phosphate group. Phospholipids have 2 ends that behave completely differently in water. Hydrophilic heads and hydrophobic tails. When phospholipids are added to water, they self-assemble into a bi-layer that shield their hydrophobic portion from water. |
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Steroids
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Class of lipids that includes many hormones.
Characterized by a carbon skeleton consisting of 4 fused rings with various functional groups attached. Includes cholesterol, a component of animal cell membranes. Used as a molecular precursor for many steroids |
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Proteins
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are the molecular tools for most cellular functions.-Proteins are polymers of amino acids arranged in a specific linear sequence and are linked by peptide bonds.
Range in length from a few monomers to more than a thousand.-Each protein has a unique linear sequence of amino acids -Proteins are abundant, making up 50% (or more) of some cells dry weight. |
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Amino acids are joined into chains by
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dehydration synthesis
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Peptide bonds
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are covalent bonds formed by a dehydration synthesis that links the carboxyl group of one amino acid to the amino group of
another amino acid. |
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Four levels of protein structure
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Primary structure
Secondary structure Tertiary structure Quaternary structure (when a protein has more than one polypeptide chain) |
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Amino acids
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are monomer building blocks of a protein. Most consist of a central carbon with four functional groups:
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Primary structure
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is the sequence of amino acids in a protein. (see fig 3-20)
-Determined by the genes (DNA).-Different for each different protein-Determines all the remaining structure |
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--Secondary structure
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is the coiling and folding of a protein’s polypeptide backbone. (caused by hydrogen bonding)
-Contributes to a protein’s overall conformation. -Stabilized by hydrogen bonding between peptide linkages in the protein backbone |
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The major types of secondary structure are
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helices and pleated sheets
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---Tertiary structure
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is the irregular contortion of a protein backbone due to bonding or interactions between side chains (R groups).
This third level of structure is superimposed on the primary and secondary structures. Interactions of amino acid side chains |
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Covalent linkage
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Disulfide bridges
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Weak interaction
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Hydrogen bonding
Ionic bonds Hydrophobic interactions |
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Why is wet hair easier to style than dry hair?
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Many proteins in your hair are held together by hydrogen bonds between the amino acids.
Adding water to your hair disrupts the hydrogen bonds between amino acids and causes them to hydrogen bond to water. When your hair dries, hydrogen bonds can re-form between amino acids |