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190 Cards in this Set

  • Front
  • Back
________ is the simplest unit to enter glycolysis?
glucose
_________ from phospho______ can also me metaolized.
glycerol, phoshphoglycerides
Galactose enters the glycolysis cycle at?
Glucose 1 phoshpate (G1P)
Mannose becomes __________ and enters glycolysis at?
Mannnose-6-phosphate and enters at Fructose-6-phosphate
Fructose can enter glycolysis at the _______ stage or can be processed in the liver and enter as glyceraldehyde into ______?
F6P, Glyceraldehyde3phosphate
How does glycogen become glucose 1-phosphate?
the 1>4 glycosidic bond is broken y phosphorolysis. Pi attacks to create G 1-P
How does Gluc 1-P become Gluc 6-P?
catalyzed by phosphoglucomutase
Dextrin + nH2O -----------> n D-Glc

Maltose + H20 -------------> 2 D-Glc

Lactose + H2O -------------> D-Gal & D-Glc

Sucrose + H2O --------------> D-Fru & D-Glc

Trehalose + H20 --------------> 2 D-Glc
dextrinase

maltase

lactase

sucrase

trehalase
In muscles and kidney, fructose is phosphorylated to ___________ by ___________ .
Fru 6-phosphate by hexokinase
In the liver, fructose uses the above two step orcess for entry into glycolysis?
Fructose -----fructokinase----> Fru-1-Phosphate -----fructose 1-phosphate adolase----> Dihydroxyacetone Phosphate -------triose phosphate isomerase----> Gleceraldehyde ----triose kinase----> G 3-P
Galactose in the diet mainly comes from ________?
lactose ---> glucose + galactose
Define the epimerization of glactose to glucose?
Define the epimerization of glactose to glucose?
THERE'S MORE TO GROWTH ON GLUCOSE THAN JUST MAKING ATP.....

The net reaction for the oxidation of glucose to ethanol via glycolysis:
glucose + 2Pi + 2ADP ------> 2ETOH + 2ATP + 2CO2 + 2H2O
Draw the pentose phosphate pathway starting with glucose 6 phosphate?
Draw the pentose phosphate pathway starting with glucose 6 phosphate?
Important products of pentose phosphate pathway include:
pentososes to make RNA, DNA, coenzymes
What are the two phases of the pentose phosphate pathway?
Oxidative phase, used to make pentose phosphates

Nonoxidative phase recycles 6 pentoses (Rn5-P) back to 6 hexoses (G 6-P)
oxidoreductases?
transfer of electrons (hydride ions of H atoms)
transferases?
group transfer reactions
hydrolases?
hydrolysis reactions, transfer of functional groups to water
Lyases?
addition of groups to double bonds or formation of double bonds by reoval of groups
isomerases?
transfer of groups within molecule to yield isomeric forms
ligases
formation of c-c, c-s, c-s , c-n bonds by condensation reactions coupled to cleavage of ATP or other triphosphates
Name 6 amino acids that can enter the CA cycle as pyruvate?
alanine, cysteine, glycine, serine, threonine, tryptophan
Name the five amino acids that can enter the CA cycle as alpha-ketoglutarate?
arginine, glutamate, glutamine, histidine, proline
Name the four aa that can enter the CA cycle as succiny-CoA?
isoleucine, methionine, threonine, valine
Name the two aa acids that can enter the CA cycle as fumarate?
Phenylalanine, tyrosine
Name the to aa that can enter the CA cycle as Oxaloacetate?
Asparagine, aspartate
Name the three irreversible reactions in glycolysis that need to be bypassed in gluconeogensis?
hexokinase glucose-->Glc6Phos

phosphofructokinase Fru6phos---->Fru1,6Bisphos

pyruvate kinase PEP-->pyruvate
Name the two enzymes necessary to convert pyruvate back to PEP?
1. pyruvate caboxylase

2. PEP caboxykinase
What are the cofactors for pyruvate carboxlase and what is the product from pyruvate?
ATP, and biotin

create oxaloacetate but needs a bicarbonate
What is the cofactor for PEP caboxykinase and what is the reactant and product?
GTP is cofactor

reactant is oxaloacetate
product is PEP
What is the bypass step 2 in gluconeogenesis?
Fru1,6bisphos ---> Fru6Phos
What is the enzyme that catalyzes the bypass for step 2 in gluconeogenesis? what is the cofactor?
Fructose 1,6 bisphosphatase

this rxn requires Mg2+
What is the bypass step 3 in gluconeogenesis?
Glc6phos--->glucose
What is the enzyme required in step 3 bypass in gluconeogenesis?
glucose 6 phophatase
homeostasis?

regulation?
maintenance of stable conditions in a metabolically dynamic system

maintains homeostasis
Normal Blood glucose levels?
5mM
control?
alters output over time
futile cycle? aka substrate cycle?
the uneconomical process of forward and reverse reaction occurring simultaneously at a high rate in the same cell
Glucogenic?
"carbon source" that enters into metabolism at a more reduced state than Acetyl-CoA and is capable of producing glucose
Glucogenesis metabolic cost?
Requires 6 high energy phosphate groups and 2 NADH to turn 2 pyruvates into 1 glucose
GLUT2?
glucose transporter in hepatocytes
Low ATP =
High AMP
acetylCoA =
citrate
LIver cell name?
hepatocyte
Muscle cell name?
myocyte
Liver vs. Muscle

hexokinase Km?
responds to?
High glucose = ?
Low glucose = ?
Liver   vs.   Muscle

hexokinase Km?
responds to?
High glucose = ?
Low glucose = ?
Glucagon _______ blood glucose levels while insulin ________ blood glucose levels.
increases, decreases
What is the Core Cycle?
anaerobic exercise in muscles
what happens in the liver during the Cori cycle?
what happens in the liver during the Cori cycle?
what happens in the muscle during the Cori cycle?
what happens in the muscle during the Cori cycle?
Enzymes for glycogen breakdown?
Enzymes for glycogen breakdown?
glycogen phosphorylase
glycogen--->Glc1Phos

Phosphoglucomutase
Glc1Phos--->Glc6Phos
What is glycogenin?
an enzyme involved in converting glucose to glycogen. acting only as a primer connecting the first few glucose molecules until UDP-glucose takes over
What is the enzyme for extending glycogen?
UDP-glucose
Allosteric modulators of PEP/pyruvate interconversions?
Allosteric modulators of PEP/pyruvate interconversions?
Allosteric modulators of hexokinase?
Allosteric modulators of hexokinase?
draw the pathway for Fru into Gycolysis?
draw the pathway for Fru into Gycolysis?
notice that it become Fru1phos and not Fru6phos
Draw the pathway for galactose to enter into glycolysis?
Draw the pathway for galactose to enter into glycolysis?
Alternate uses for G6P?
glycogen, pentose phosphates--->nucleotides
Alternate uses for F6P?
amino sugars---->gycolipids and glycoproteins
Alternate uses for DHAP or G3P?
Lipids
Alternate uses for 3PG
produce serine
Alternate uses for PEP?
Aromatic aa
Alternate uses for pyruvate?
Aspartate---->pyrimidines or asparagine

alanine
Where does the CA cycle occur?
in the mitochondrial matrix
What is the product from the pyruvate caboxylase enzyme?
oxaloacetate
What cofactors are required by pyruvate carboxylase for conversion to oxaloaetate?
What cofactors are required by pyruvate carboxylase for conversion to oxaloaetate?
ATP, bicarbonate, biotynyl enzyme
Pyruvate and CO2 create ________?
oxaloacetate
In the pyruvate dehygrogenase complex what 2 molecules are required for creation of ATP?
In the pyruvate dehygrogenase complex what 2 molecules are required for creation of ATP?
oxaoacetate and __________ form citrate?
acetyl CoA
Acetyl CoA and ________ form citrate?
oxaloacetate
Aconitase is what kind of enzyme?
isomerase
What is the mechanism for isocitrate dehydrogenase?
Beta-hydroxy decarboxylation
What mechanism is similar to alpha-ketoglutarate dehydrogenase?
pryuvate dehydrogenase
Which residue is responsible for the cleavage of the thioester bond in Succinyl-CoA synthetase?
histidine
What drives the malate dehydrogenase reaction?
low oxaloacetate
Using delta G "not prime" values _____% of the energy released from the oidation of glucose to CO2 is captured,
34
Using just delta G values ____% of the energy released from the oidation of glucose to CO2 is captured,
65
Where does the pyruvate carboxylase reaction happen?
liver, kidney
Where does the PEP carboxykinase reaction happen?
heart, muscle
What are some other roles for:
citrate?
alpha-ketoglutarate?
succinyl CoA?
oxaloacetate?
What are some other roles for:
citrate?
alpha-ketoglutarate?
succinyl CoA?
oxaloacetate?
In the Glyoxylate cycle, bypassing the CO2 producing steps allows bacteria and pats to grow on __________?
In the Glyoxylate cycle, bypassing the CO2 producing steps allows bacteria and pats to grow on __________?
acetate
what 2 enzymes exist in the glyoxylate cycle that don't exist in the CA cycle? What molecule exists in the glyoxylate cycle that doesn't exist in the CA cycle?
what 2 enzymes exist in the glyoxylate cycle that don't exist in the CA cycle?  What molecule exists in the glyoxylate cycle that doesn't exist in the CA cycle?
What are the three steps where the CA cycle is regulated?
citrate synthase
isocitrate DH
alpha-ketoglutarate DH
What are the positive and negative effectors for the three CA regulation points?
citrate synthase
isocitrate DH
alpha-ketoglutarate DH
What are the positive and negative effectors for the three CA regulation points?
citrate synthase
isocitrate DH
alpha-ketoglutarate DH
___________ are the energetic fatty acid molecule.
triacylglycerols
Triacylglycerols are _______ to free _______?
hydrolyzed, fatty acids and glycerol
Triacylglycerols are hydrolyzed to free fatty acids and glycerol by _________ and _______?
lipoprotein lipase, hormone-sensitive triacylglycerol lipase
Where does glycerol that is released from triacylglycerols get transported to?
liver or kidney
What does a freed glycerol get converted to?
DHAP
Fatty acid transports into the inner mitochondrial matrix by?
carnitine palmitoyl transferase
Beta oxidation of fatty acids produce _______ and ________?
1 NADH and 1 FADH2
Beta oxidation of fatty acids information.
Beta oxidation of fatty acids information.
Getting fructose into glycolysis
Getting fructose into glycolysis
The epimerization of galactose to glucose
The epimerization of galactose to glucose
The net reaction for the oxidation of glucose to ethanol via glycolysis:
Glucose + 2 Pi + 2 ADP --->

2 ethanol + 2 ATP + 2 CO2 + 2H20
the pentose phosphate pathway
the pentose phosphate pathway
What two aa are not gluceogenic aa?
lysine, leucine
What are glucogenic aa?
A glucogenic amino acid is an amino acid that can be converted into glucose through gluconeogenesis.[1][2] This is in contrast to the ketogenic amino acids, which are converted into ketone bodies.

The production of glucose from glucogenic amino acids involves these amino acids' being converted to alpha keto acids and then to glucose, with both processes occurring in the liver. This mechanism predominates during catabolysis, rising as fasting and starvation increase in severity.
What are ketogenic aa?
A ketogenic amino acid is an amino acid that can be degraded directly into Acetyl CoA through ketogenesis
What are the 7 ketogenic aa?
leucine
lysine

In humans, five amino acids are both ketogenic and glucogenic:
isoleucine
phenylalanine
tryptophan
tyrosine
threonine
Pyruvate carboxylase is a 2-step reaction:
Bicarbonate is first activated by transient phosphorylation and transfer to biotin
Biotin is a carrier of activated HCO3-
Pyruvate enolate attacks CO2 in second step
Pyruvate Carboxylase is a _____________: oxaloacetate is shuttled out of mitochondria as _________?
mitochondrial enzyme, malate
PEP carboxykinase mechanism?
PEP carboxykinase mechanism?
Glucose 6 phosphatase is found in ______ ?
This enzyme is found in the lumen of the endoplasmic reticulum (ER)
Membrane associated, found only in liver/kidney
Glucose generated in those tissues is sent to the blood stream to supply brain and muscle
Futile cycling with Hexokinase/Glucokinase is limited by multiple regulatory controls?
Glucokinase has high KM for glucose
Glucokinase activity is inhibited by multiple allosteric regulators
Glucokinase is sent to the nucleus during gluconeogenesis
Fates of Glucose 6-phosphate formed by glycogen breakdown?
In muscle, glucose 6-P enters glycolysis
Support muscle contraction
In liver, glucose 6-P -> glucose, then released to blood to “buffer” glucose levels
Elongation of an existing glycogen chain happens with (enzyme name)?
glycogen synthase
Sugar nucleotides are used for?
Used for polymerizations
Modifications of sugars
Nucleotidyl group serves as a handle for enzymes, an excellent leaving group, and a way to set aside sugars for biosynthesis
How to make a glycogen particle de nuovo…
How to make a glycogen particle de nuovo…
what molecules are needed to create and start glycogen?
what molecules are needed to create and start glycogen?
Regulation of glucose metabolism
Regulation of glucose metabolism
Metabolic regulation vs. metabolic control
Regulation: processes that serve to maintain homeostasis
• Efforts to maintain something steady, even as other things change
– Control: processes that lead to a change in the output of a metabolic pathway over time
• The change in output is in response to an environmental change
Muscle (myotic) and liver (hepatic) during high blood glucose?
High blood glucose
Muscles synthesize glycogen, increase glucose uptake
Liver cells decrease glucose export, increase glycogen synth. & glycolysis
Muscle (myotic) and liver (hepatic) during low blood glucose?
Low blood glucose
Muscles access glycogen, retool metabolism to access other energy sources
Liver cells break down glycogen and increase gluconeogenesis to buffer [glucose] in blood
These are?

Epinephrine (fight or flight)
Ca2+, AMP (rising levels indicate muscle contraction and ATP depletion, respectively)
reasons to push the CA cycle
Muscle glycogen phosphorylase is regulated by phosphorylation
Muscle glycogen phosphorylase is regulated by phosphorylation
Glycogen phosphorylase of liver cells also serve as a direct sensor of [glucose]
Glycogen phosphorylase of liver cells also serve as a direct sensor of [glucose]
PP1 ________ which inactivates ___________ signalling the need for less glucose and not to breakdown glycogen.
dephosphorylates, phosphorylase a making phosphorylase b
Glycogen Synthase Regulation
Glycogen Synthase Regulation
How GSK3 is regulated by Insulin
How GSK3 is regulated by Insulin
General result of PP1 activity is to promote?
glycogen synthesis
• Epinepherine & Glucagon inhibit ______ activiity?
PP!
Hexokinase is inhibited by____ in myocytes?
G6P
Just check this out!!!!!
Just check this out!!!!!
Regulator of PFK 1
ATP decreases, F2,6P is an importat positive activator

PEP and citrate and glucagon inhibit
Glucagon causes an _________ in blood glucose levels, while insulin causes a _________ in blood glucose levels,
increase, decrease
Regulation of pyruvate kinase
Regulation of pyruvate kinase
[F26BP] is controlled by glucagon and insulin
[F26BP] is controlled by glucagon and insulin
Differential regulation of carbohydrate metabolism in muscle and liver
Differential regulation of carbohydrate metabolism in muscle and liver
Pyruvate Dehydrogenase Complex enzymes needed?
Three kinds of enzymes with catalytic cofactors
Thiamine pyrophosphate (TPP)
Lipoamide
FAD

CoA and NAD+ are stoichiometric cofactors
Summary of reactions for pyruvate dehydrogenase complex
Summary of reactions for pyruvate dehydrogenase complex
Malate is oxidized to form oxaloacetate
This reaction is driven to the right in the cell due to the low concentration of oxaloacetate (<10-6 M). OAA is rapidly removed by the exergonic rxn of citrate synthase.
Biosynthetic roles of the citric acid cycle---

Amino acids are derived from citric acid cycle intermediates these are called anaplerotic reactions.

oxaloacetate => asp, asn
α-ketoglut => glu, gln, pro, arg
Succ. CoA => porphyrins
oxaloacetate => asp, asn
α-ketoglut => glu, gln, pro, arg
Succ. CoA => porphyrins
Anaplerotic reactions are driven by hydrolysis of a high energy _______ compound or via energetically favorable ________ reactions.
phosphoryl, redox
What is an anaplerotic reaction?
Anaplerotic reactions (from the Greek Ana= 'up' and Plerotikos= 'to fill') are those that form intermediates of a metabolic pathway. Examples of such are found in the Tricarboxylic acid (TCA) Cycle
Making acetyl CoA from Acetate
Catalyzed by acetyl CoA synthetase
Acetate + CoA + ATP => acetyl CoA + AMP + PPi
PPi (pyrophosphate) is hydrolyzed to orthophosphate
Two high-energy phosphoanhydride bonds are used to “activate” acetate
Name the molecule that regulates Isocitrate DH?
Reversible phosphorylation of IDH inhibits enzyme activity (one Pi added per subunit)
Prevents isocitrate binding, no activity
Regulation of the Pyruvate Dehydrogenase Complex
Regulation of the Pyruvate Dehydrogenase Complex
Regulation of Citrate Synthase
Regulation of Citrate Synthase
What happens when there’s lots of ATP and Acetyl CoA?
Use Acetyl CoA to make fatty acids
_________and _______ are indicators of the energy charge of the cell.
ATP and NADH
Regulation of Isocitrate Dehydrogenase
Regulation of Isocitrate Dehydrogenase
Regulation of α-ketoglutarate Dehydrogenase
Regulated in response to energy charge of the cell and accumulation of products
ATP is an allosteric inhibitor
High NADH and succinyl CoA levels inhibit
Citrate and acetyl CoA feed back to glycolysis
Excess citrate, inhibit PFK-1 to slow glycolysis
Excess acetyl CoA, inhibit pyruvate kinase to slow pyruvate production
Phospholipids are degraded by pancreatic _______________?
phospholipase A2
Lipid digestion products are converted to triacylglyerols in the intestinal mucosa and are packaged as lipo-protein complexes (_________) and released into the bloodstream
chlyomicrons
Triacylglycerols in chylomicrons and VLDL are hydrolyzed to free fatty acids and glycerol in capillaries of adipose and muscle tissues by ____________?
lipoprotein lipase
Triacylglycerols stored in adipose are hydrolyzed to glycerol and free fatty acids by hormone-sensitive ______________?
triacylglycerol lipase
Free fatty acids in bloodstream bind to __________ , effectively increasing the ______ of fatty acids many times and preventing their acting as detergents
serum albumin, solubility
Glycerol released by hydrolysis of triacylglycerols is transported to liver or kidneys and converted to _______.
Glycerol released by hydrolysis of triacylglycerols is transported to liver or kidneys and converted to _______.
DHAP
the Activation of Fatty Acids for Oxidation is catalyzed by?
Activation process is catalyzed by a family of acyl-CoA synthetases
Enzymes differ by their chain-length specificities.
These enzymes are associated with either the ER or the outer mitochondrial membrane
Catalyze the reaction:
FA + CoA + ATP <=> acyl-CoA + AMP + PPi
Transport of long-chain fatty acyl-CoA across the mitochondrial inner membrane
Transport of long-chain fatty acyl-CoA across the mitochondrial inner membrane
Fatty acids are dismembered through the β oxidation of fatty acyl-CoA, a four reaction process:
Fatty acids are dismembered through the β oxidation of fatty acyl-CoA, a four reaction process:
Each round of β oxidation of fatty acids produces one _____, one ______ , and one ______________.
NADH, FADH2, acetyl-CoA
Fatty acid synthesis begins with _________ in the cytoplasm?
Fatty acid synthesis begins with _________ in the cytoplasm?
malonyl CoA
Oxidation of odd-chain fatty acids

Some plants and marine organisms make fatty acids with odd number of carbons
Final round of β oxidation forms propionyl-CoA
Enoyl coA enzymes do what?
place the double bonds in the right position for Beta oxidation of fatty acids
The presence of a double bond at an even numbered carbon atom results in the formation of 2,4-dienoyl-CoA, which is a poor substrate for enoyl-CoA hydratase
The solution is to reduce the double bond at C4, and isomerize (in mammals) to create the appropriate substrate for the hydratase
The presence of a double bond at an even numbered carbon atom results in the formation of 2,4-dienoyl-CoA, which is a poor substrate for enoyl-CoA hydratase
The solution is to reduce the double bond at C4, and isomerize (in mammals) to create the appropr
Acetyl-CoA can be made into “ketone bodies”
Acetyl-CoA can be made into “ketone bodies”
Fatty acid synthesis uses ________ as an electron ________?
NADPH, donor
Fatty acid Beta Oxidation uses ______ and ______ as electron _________?
FAD, NAD, electron acceptors
What are the four major enzymes for FA biosynthesis?
What are the four major enzymes for FA biosynthesis?
KS, KR, DH, ER
Substrate sources for FA biosynthesis
Substrate sources for FA biosynthesis
Their is nor storage of amino acids, they are used for sythesis of _________, and other _________. The rest are used as ________ fuel.
proteins, biomolecules, metabolic fuel
Amino Acid Catabolism

Aminotransferases move amino groups from the amino acids to __________.

The α-ketoglutarate is converted to _______.

The amino acid that donated the amino group is known as an ________?

Glutamate is deaminated (oxidatively), then the ______ is excreted in various forms?

In mammals, NH4+ is further metabolized to ______ via reactions of the “_____ cycle".
alpha-ketoglutarate

glutamate

α-keto acid

NH4+

urea
How is this transamination accomplished?
How is this transamination accomplished?
Mechanism of transamination reactions
Mechanism of transamination reactions
The transamination is only half done after the PLP reaction. Leaving PMP and Alpha-Keto acid.
The transamination is only half done after the PLP reaction.  Leaving PMP and Alpha-Keto acid.
PLP catalyzes many reactions of amino acids
PLP catalyzes many reactions of amino acids
Oxidative deamination of glutamate: catalyzed by glutamate dehydrogenase
Oxidative deamination of glutamate: catalyzed by glutamate dehydrogenase
Regulation of glutamate dehydrogenase
Regulation of glutamate dehydrogenase
The sum of the reactions catalyzed by aminotransferases and glutamate dehydrogenase
The sum of the reactions catalyzed by aminotransferases and glutamate dehydrogenase
Glucogenic amino acids contribute carbon skeletons that can lead to formation of _______.
glucose
Ketogenic amino acids form “________” (acetone, acetoacetate or hydroxybutarate).
ketone bodies
Getting rid of ammonia...
Getting rid of ammonia...
Transporting excess ammonia to the liver NH4+ is too dangerous to float through the bloodstream to the liver (hepatic cells) where it is formed into urea. In some tissues it ususally combines with _________ and gets transported.
glutamate
NH4+ can complex with _____ in urine in kidney during periods of acidosis
acids
NH4+ enters urea cycle in _________?
liver
________ is used to move “NH4+” from muscle to liver.
Alanine
Using glutamate, what two enzymes take alpha-ketoglutarate to glutamate to glutamine?
Using glutamate, what two enzymes take alpha-ketoglutarate to glutamate to glutamine?
Converting NH4+ to Urea: The Urea Cycle
Converting NH4+ to Urea: The Urea Cycle
The reactions of the urea cycle take place in both the ____________________.
cytoplasm and mitochondria
Urea comes from ________. Hence, the cycle is designed to regenerate __________.
arginine
Making urea from arginine.

arginine amd urea make __________?
ornithine
ornithine + _________ ------> citrulline
carbamoyl phosphate
carbamoyl phosphate is where we rid ourselves of ________ that is generated by the oxidative deamination of _________, this process costs _____ ATP and occurs in the __________.
NH4+, glutamate, 2, mitochondria
The overall stoichiometry of urea synthesis
CO2 + NH4+ + 3 ATP + aspartate + 2 H2O ==>
urea + 2 ADP +2 Pi + AMP + PPi +fumarate
Pyrophosphate is rapidly hydrolyzed, so 4 ~P are consumed
Two are consumed in synthesis of carbamoyl phosphate
Two are consumed in synthesis of arginosuccinate
Fumarate (oxaloacetate) has several possible fates:
transamination to aspartate (take part in urea cycle)
conversion to glucose (via PEP and gluconeogenesis)
cycling through the citric acid cycle
conversion to pyruvate
Draw the PLP?
Draw the PLP?
Draw the PMP?
Draw the PMP?