Apalachicola River, a primary source of fresh water in the bay, is the largest alluvial river in the state of Florida. It supplies about 35% or fresh water and nutrients the eastern Gulf of Mexico; supporting commercial fisheries valued more than $5.8 billion and livelihood of estuarine and coastal habitats (McNulty et al. 1973). Although its tributaries are affected by numerous dams, Apalachicola River earns its position in the list of one of the last remaining undammed large rivers in the United States. The river receives more than 80% of its water from rainfall and runoff in the upper ACF basin. However, rainfall in Florida and contribution of Chipola River, a major tributary, can alter the flows in the lower Apalachicola River during low flow conditions. Unfortunately, a recent report of America’s most endangered rivers (2016) listed Apalachicola River as the no.1 endangered river in the US based on the future of the river and surrounding ecosystem due to excessive and unmanaged water use owing to a two-decade long tri-state (Georgia, Alabama, and Florida) water conflict. There are serious concerns about the impacts of reduced freshwater input on the biologically rich and economically important habitats of the Apalachicola watershed (Petes et
Apalachicola River, a primary source of fresh water in the bay, is the largest alluvial river in the state of Florida. It supplies about 35% or fresh water and nutrients the eastern Gulf of Mexico; supporting commercial fisheries valued more than $5.8 billion and livelihood of estuarine and coastal habitats (McNulty et al. 1973). Although its tributaries are affected by numerous dams, Apalachicola River earns its position in the list of one of the last remaining undammed large rivers in the United States. The river receives more than 80% of its water from rainfall and runoff in the upper ACF basin. However, rainfall in Florida and contribution of Chipola River, a major tributary, can alter the flows in the lower Apalachicola River during low flow conditions. Unfortunately, a recent report of America’s most endangered rivers (2016) listed Apalachicola River as the no.1 endangered river in the US based on the future of the river and surrounding ecosystem due to excessive and unmanaged water use owing to a two-decade long tri-state (Georgia, Alabama, and Florida) water conflict. There are serious concerns about the impacts of reduced freshwater input on the biologically rich and economically important habitats of the Apalachicola watershed (Petes et