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170 Cards in this Set

  • Front
  • Back
Herpes virus is prevalent in ___
eyes
Herpes is a large, _____ virus
enveloped ds DNA
What is the shape of a herpes virus
Toroidal (donut shaped?)
True or False

Herpes virus is ubiquitous!
True - over 120 herpesviruses isolated so far- EVEN YOU could have it.
To date, there are 9 known Human Herpesviruses (HHV). List them
HSV-1,
HSV-2,
Varicella-zoster (HHV-3),
CMV (HHV-5),
HHV-6A,
HHV-6B,
HHV-7,
Epstein-Barr virus (HHV-4),
HSV-8 (KSHV)
True or False- all herpes viruses use the same antigen
FALSE- they actually share no common antigen
Herpes simplex virus
HSV1 and HSV2
Varicella-zoster virus
(HHV-3, Chicken pox and
shingles
Cytomegalovirus
HHV-5
Kaposi’s sarcoma herpesvirus
KSHV or HHV-8)
Epstein-Barr virus
(HHV-4, Mononucleosis, Burkitt’s
lymphoma
_____% of US citizens have HSV1
50-70
Three subfamilies of Herpes?
Write it out
The three subfamilies of herpesvirus are based on what 3 biological properties.
1. host range
2. length of replication cycle
3. establishment of latency
The three subfamilies of herpesvirus are based on what 3 biological properties.
1. host range
2. length of replication cycle
3. establishment of latency
Alpha herpes
Write it out
Beta herpes virus
Beta has a medium host range
Gamma herpes virus
Gamma has a very specific host range
Alphaherpes are ___ herpes
human
Characteristics of herpes simplex 1,2
•Coldsores, lesions at site of infection, reactivation.
• Rare but often fatal encephalitis
• Keratitis
Characteristics of HHV-3 (varicella zoster)
• Transmitted by droplets, replicates initially in the nasopharynx
• Latency is established in dorsal root ganglia
• Highly contagious; ~ 95% of adults show serologic evidence of infection
HHV-5, Cytomegalovirus are part of which subfamily?
Betaherpesvirus
Characteristics of HHV-5 Cytomegalovirs
1) Congenital: hepatosplenomegaly,
retinitis, rash, and CNS involvement.
2) ~10 % of older children and adults: mononucleosis syndrome with fever,
malaise, atypical lymphocytosis, and
pharyngitis.
3) Immunocompromised hosts: lifethreatening
disseminated disease involving
the lungs, gastrointestinal tract, liver, retina,
and central nervous system.
____ is among the most prevalent viral infections worldwide
HHV-5 or cytomegalovirus
Where does HHV-5 replicate mainly? Where does it shed?
In the salivary glands and kidneys.

Shedding occurs in the urine and saliva
This virus induces characteristic giant cells with intranuclear inclusions
HHV-5 or cytomegalovirus
HHV-6,7- is trophic to _____
CD 4+ cells
True or False
HHV-6,7 is present in nearly everyone by 5 years of age
True- think roseola
Gamma herpes virus include:
HHV-4 (Eppstein barr virus), and HHV-8 (kaposi's sarcoma)
Details about HHV-4, Epstein-Barr Virus
•Transmitted by intimate contact, particularly via the
exchange of saliva
•Replicates in epithelial cells of the oropharynx and in B lymphocytes
•Widespread in all human populations; causes
infectious mononucleosis
•Establishes latent growth-transforming infection of
B lymphocytes (normally controlled by immune
response).
•Post-transplant lymphoma, Burkitt’s lymphoma,
Hodgkin’s lymphoma, nasopharyngeal carcinoma
Details about HHV-8 Kaposi's sarcoma
•Isolated in 1994; new model virus that shows how viruses can cause
tumors
•Widespread in sub-Saharan Africa; low levels of infection occur in
most Northern European/North American populations
•Gay/bi-sexual men are more susceptible to infection: AIDS-associated
True or False
Herpesviruses establish
acute and latent infections
True

Think chicken pox and shingles
Think - cold sore breakouts (yuck)
Patterns of Infection for herpes virus
1.Acute infection
2. Virus production
3. symptoms
4. viral clearance
5. persistent infection
6. Virus production over
lifetime
What is the key to viral latency?
Immune system evasion and modulation
List some examples of immune system evasion/modulation
1. Remain non cytopathic
2. Infect tissues with reduce immune surveillance (such as eye, brain, skin, etc)
3. Directly affect immune system
4.Genome integration/episomal persistence.
5. Produce soluble cytokine decoy-receptors.
6. Block antigen presentation by MHC-I.
Draw the 4 components of HSV
1. linear ds DNA
2. Icosahedral capsid
3. Tegument with proteins and mRNA
4. Envelopes with 8 proteins and spike glycoproteins
HSV-1: capsid is T=
16
960 copies of VP5 make up the capsid.
HSV 1,2 - Tissue Tropism
Viral replication at the site
of entry (mucosal surfaces)Acute/Lytic infection.
-Innate defenses limit viral
spread.
-Progeny virus infects local
sensory neurons.
-Establish latent infection.
HSV-1 axonal is transported by _______.
the dynein support sytem of microtubules
Replication time of HSV is approximately ___ hours
8
Describe HSV-1 infection cycle
1. Virus particle binds to receptors on plasma membrane. Uncoating occurs & DNA enters nucleus.
2.Virion components (±-TIF; VP16)activate immediate early (IE) gene expression.
3. Early (E) gene expression.
4. Viral DNA replication
5. Late (L) gene expression & virus assembly; cell:cell spread.
6. Apoptosis
True or False

HSV-1 uses its own RNA polymerase
False it uses host RNA polymerase
What does immediate early transcript synthesize?
alpha proteins wheich are used to trigger the synthesis of early gene expression
Beta proteins in HSV-1 of what?
They provide DNA replication machinery and can trigger DNA replication
What is the role of HSP in HSV-1?
It tries to degrade host mRNA and stop translation
HSV-1 has greater than how many membrane proteins?
10
In HSV-1 gc receptor binds to:
- gC binds heparin sulfate proteoglycans
In HSV-1 gD receptor binds to
TNF/NGF related receptors, then undergoes conformational change allowing gB, gH, gI, gL to mediate membrane fusion
In HSV-1 entry and uncoating what goes through the nuclear pore?
DNA core and ±-TIF, here Genome immediately circularizes upon entry
into nucleus
True or False
HSV-1 entry is achieved by receptor mediated endocytosis
False- it is by the direct fusion with the PM
HSV gC interacts with _____________.
cellular heparin sulfate. (HSV-1)
gH/gL & gB mediate _____
virion penetration.(HSV-1)
Describe the HSV-1 genome
have ul and us regions flanked by indirect repeats (IR) or direct repeats (dr)

The IR's and multiple ORI allow for different rearrangements

4 ISOMERS!
There are ___ isoforms of HSV-1
4
Draw the 4 isoforms of HSV-1

Are they all infectious?
Yes
What are the six important regions of the HSV genome?
1. linear molecule "a" sequences (circulization and packaging of viral DNA)
2. 9000 long bp repeat (b sequences) that encode a0 (early regulatory protein) and most of the gene for latency associated transcript (LAT)
3. Long unique region (108,000 bp) -replication enzymes and capsid proteins
4. The 6,600 bp short
repeats (RS-C sequences) encodes ICP4
5. The origins of replication.
6. The 13,000 bp unique
short region (US) encodes
12 ORFs for glycoproteins (host range and response for host defense)
Function of ICP4?
a powerful transcriptional
activator that stimulates all
early viral gene expression
that leads to viral DNA
replication.
HSV-1
Ends of linear dsDNA (a
sequences) are important
for
packaging
HSV-1
Long repeat (b sequences)
encoding IE α0 & LATs.
HSV-1
Long unique region (UL)–
encodes DNA replication and capsid proteins.
HSV-1
Short repeats (c sequences)
encoding α4 transcription
activator
HSV-1
Replication origins
OriS and OriL
HSV-1
Unique short region (US)
encoding host range &
response to host defense
proteins.
How many origins of replication does HSV-1 have?
3 OriS, OriL, and one other (?)
In HSV-1 who makes the transcripts?
host pol II
True or False
In HSV-1 Protein products of each class regulate expression of proteins in other classes.
True

(IE->E->L)
In HSV-1 _____enters nucleus enhancing IE viral gene transcription
while_____ specific RNase, attacks host transcripts in cytoplasm
Tegument protein ±-TIF (VP16)
vhS
In HSV-1 IE mRNAs spliced & exported to cytoplasm to ____
make proteins which have regulatory functions.
In HSV-1 •α 0 and α 4 stimulate and α 47 inhibits ___.
early mRNA synthesis
MHC1 Ag presentation
Function of α TIF/VP16) in HSV-1
found in the tegument, it acts immediately upon virus
entry to stimulate transcription.

Binding of Hcf (host cell factor) induces conformational
change in α TIF, allowing it to bind Oct-1. Oct-1 binds GAXAT, a component of immediate early gene
promoters for HSV, and thereby enhances transcription.
Binding of Hcf (host cell factor) induces conformational
change in α TIF, allowing it to bind Oct-1. Oct-1 binds GAXAT, a component of immediate early gene
promoters for HSV, and thereby enhances transcription.
Just review the slide
What does vhS protein stand for?

What virus releases it?
Viral host shut down protein

HSV-1
HcF stands fore what and is found in conjunction with which protein?
Host cell factor, VP16
-may have viral latency functions
What is OCT-1 and what does it bind to?
In HSV-1 Oct-1 binds to garat octomer then to VP16 and HcF complex and is used to enhance early transcription (controls immediate early viral gene expression)
What is GARAT and where is it found?
It is early gene promotors for HSV
As a monomer, VP16 can stimulate transcription at sites
distal from the promoter.
As a heterotrimer, VP16 stimulates transcription
adjacent to viral promoter.
Early genes (β) reach peak expression ~____ post infection
5-7 hr
Functions of (β) coded genes in HSV-1
modulating host cellular activities,promoting DNA replication, viral nucleic acid metabolism, DNA repair.
Appearance of (β) proteins in HSV-1 signals onset of
viral dna replication
Early mRNAs are rarely spliced when exported from the nucleus to
generate (β) -proteins. Exported w/ help of
ICP-27.
β-proteins shut down:
IE mRNA synthesis, host protein synthesis and
stimulate late mRNA synthesis
HSV-1 has what kind of replication?
Rolling Circle
7 proteins necessary for HSV-1 replication?
DNA polymerase (UL30)
DNA binding proteins(UL42 and ICP8)
ORI binding protein (UL9)and the helicase/primase complex (UL5, 8, and 52).
HSV: Rolling circle DNA replication in the nucleus
1. 3'OH nicked in dsDNA at an ORI
2. Intact strand copied, displacing 5’ end of nicked strand.
3.Nicked strand copied by
discontinuous DNA synthesis
using RNA primers
4. Multiple cycles of copying intact
circular template &
discontinuous DNA synthesis
generates concatamers.
Define concatamer
A DNA segment made up of repeated sequences linked end to end.
Late ___ genes transcribed off of concatemeric
replicated DNA.
γ
Functions of γ proteins
largely structural and imported into the nucleus or inserted into cellular
membranes

γ proteins also shut down early mRNA synthesis.
True or False
in HSV-1 virus DNA replication/L gene expression occurs in discrete
“replication compartments” in the nucleus.
True
HSV-1 capsid assembly takes place where?
In the nucleus via a sequential assembly
Draw the HSV-1 capsid assembly
30 HSV-1 gene products
are structural components
of the virion.
HSV-1: DNA Packaging
Empty capsids recognize “a”
packaging sequences of genomic
DNA.
¸ DNA is reeled into capsid until a
headful threshold is reached (1
genome equivalent).
¸ When an “a”-sequence of identical
orientation to the first is encountered,
the genome is cleaved in direct
repeat 1 (DR1) region.
¸ The genome may be replicated
within 20 minutes, a feat that
requires 15,000 nucleotides/
min/strand to be polymerized.
HSV-1
_____ directs budding of
through inner nuclear
membrane via ______.
gpUL31
gpUL34
True or False

During budding of HSV-1 the virus loses its outer envelope
True

HSV-1 acquires and looses membranes during assembly (enveloped, de-enveloped, enveloped and so on)
Complete cycle of HSV-1 (no details)
Immediate Early
Early
Late
Acute infection cycle
Lytic infection
______: viral RNAs
generated during latent infection (40-100,000/neuron).
Latency associated transcripts
LAT's in HSV-1 lack what and are found where?
lack polyA tails; restricted to nucleus.
LATS may bind ____ to prevent its transcription &
subsequent transactivation of early genes.
ICP0
Typical HSV-1 clinical manifestations can occur because
sun burn, stress, nerve damage, menstruation, steroids,
HSV-1: Immune system evasion
-HSV shuts off host cell protein synthesis
-HSV can make inactive cytokine homologs that bind
cytokine receptors "decoys"
-HSV blocks apoptosis
Herpesvirus ICP47 inhibits
TAP translocator,
HSV: Reactivation is
acute
MHC-2 presentation for HSV-1
___activates antiviral response and clears infection
(DC and M)
HSV-1: Histopathology
Virus-mediated cell death
≤ Nuclear degeneration.
≤ Multi-nucleated cells
≤ Vesicular fluid between
epidermis and dermal layer.
≤ Intense inflammatory response
in dermal layer
≤ Healing results in pustules.
HSV-1 accounts for 95% of _____ in US.
viral encephalitis
HSV-1 and yer eyes
Herpetic keratitis AND Corneal ulcer with hypopyon (collection of pus in the anterior chamber of the eye).
Acyclovir treats what and how does it work?
HSV-1

nucleoside chain terminator
ACV phosphorylated
1st by viral thymidine
kinase (TK) and then
by cellular kinase to
produce ACV triphosphate
which competes with dGTP
for DNA polymerase
____ of all Americans are infected with HSV-1
50-80%
True or False

Most people who transmit HSV-1 are asymptomatic.
True
True or False

Co-infection with HSV-1 and HSV-2 is common
True
Chicken pox
(Varicella)
10 replication at site of infection
followed by spread through blood
stream (viremia).
Complications are rare.
Shingles
(Zoster)
After primary infection, virus
persists in sensory ganglia of CNS
Varicella-Zoster Virus (VZV) QUICKIES
Enveloped icosahedral
capsids.
• Linear dsDNA– 112 kb in
size with 68 ORFs.
• Molecular biology similar to
HSV in many respects…
IN VZV every bump =
1 infected T-cell
(that eventually undergoes
apoptosis
Pathogenesis of VZV
respiratory/contact
transmission
-systemic infection
-Tonsil T-cells - motility
-virus delivered to skin through cappillaries
True or False
VZV and HSV can be distinguished from one another by classical histological staining such as hematoxylin & eosin.
False- it cannot
Varicella most common in ___, but zoster is common ___
winter/spring
all year long
VZV: Therapeutics
Acyclovir/Ganciclovir
Foscarnet
Vidarabine
VZIG
Acyclovir/Ganciclovir
Most effective drug against VZV. Reduces duration of
disease, pain and viral shedding.
Foscarnet
Used for acyclovir-resistant strains of VZV.
Vidarabine
Inhibits nucleic acid synthesis. (VZV)
VZIG
Varicell-zoster immunoglobulin can prevent or reduce
symptoms. Protection lasts ~ 3 weeks. This passive
immunnization is recommended for immunocompromised
individuals, pregnant women, newborns and hospital
personnel who have been exposed to the virus.
VZV Vaccine: ______% EFFECTIVE
85
VZV Differences from HSV:
-Respiratory secretions are infectious
-Systemic disease
-The rash itches
-Virus is latent in multiple sensory ganglia
Cytomegalovirus (CMV/HHV5) QUICKEE
Betaherpesvirinae
≤ One serotype
≤ Structure similar to
HSV (envelope,
tegument, capsid)
≤ Linear dsDNA
genome (230-240 kb
in size)… the
largest!
CMV: Transmission by
Age Group

Fetus ----- Across placenta
Infant ----- Contact with maternal body fluids
during birth; breast-feeding
Youth ----- Contact with urine/saliva from
other children
Adults ----- Kissing; sexual intercourse; blood
transfusion
True or False
CMV goes away eventually
False - though it is silent, it lasts a lifetime.. however no destruction of human cells
CMV latent persistance in ____ and_____
monocytes and neutrophils
Immune response ____ against primary infection of CMV,
but not against reactivations.
(IgM and IgG)
True or False

Most people are infected with CMV worldwide
TRUE
Symptoms of CMV (HHV5)
prolonged high fever, chills, severe fatigue
CMV diagnosis with....
Test for IgM or IgG using ELISA.

PCR (the ‘gold-standard’).
Treat CMV with...?
Treated with Ganciclovir
(Acyclovir is not effective
because CMV does not have
thymidine kinase).
Does CMV have a vaccine?
No
____ is the most common virus transmitted to a pregnant
woman's unborn child
CMV
Congenital CMV (meaning present at birth) is as common a cause of serious disability such as:
Down syndrome, fetal alcohol
syndrome, and neural tube defects
CMV: Histopathology
Cytoplasmic Inclusions
CMV nuclear inclusions with perinuclear halo
reactive alveolar lining cells
_____ blocks antigen presentatio nby MHC-1 in HSV-1
ICP47
Is there a treatment for CMV
No
HHV6 and HHV7 are what kind of herpesvirus?
Beta
HHV6/7 Tropism
CD4+ T- cells predominant
targets– CD4 is not the
receptor).
• B- cells & macrophages
can be infected
• Enlargement of
lymphocytes followed by
lytic degeneration.
What are the two variants for HHV6/HBLV (human B-lymphotropic virus?
HHV6-A and HHV6-B
HHV6 in children cause what?
"roseola infantum", a common childhood rash
HHV6: Transmission & clinical manifestations
Virus present in saliva- may spread by
fomites and aerosol.
CNS infection - encephalitis
Skin infection - rash
Liver infection - liver dysfunction
HHV6 Latency and
reactivation (draw it)
Ugh
HHV6 Latency and
reactivation (draw it)
Ugh
Human herpesvirus 7 (HHV-7)quickee
•betaherpesvirus
• First isolated from human CD4+ cells in 1990.
• Genome ~170 kbp, organization similar to HHV-6.
• The complete genome sequence of HHV-7
determined; shows a high degree of conservation
with HHV-6.
• However, only limited antigenic cross-reactivity
between the two viruses.
• At present, there is no clear evidence for the
direct involvement of HHV-7 in any human disease.
List two Gammaherrpessvviirrussess
EBV (HHV-4) and Kaposi's Sarcoma (HHV8)
EBV caused by ___ and causes ___.
•Transmitted by intimate contact, particularly via the
exchange of saliva

infectious mononucleosis

ALSO-•Post-transplant lymphoma, Burkitt’s lymphoma,
Hodgkin’s lymphoma, nasopharyngeal carcinoma
HHV8: Kaposi’s sarcoma herpesvirus QUICKEE
Structural genes similar
to other HV.
≤ Genome has numerous
homologs to mammalian
regulatory genes (incl.
VEGF) in an “oncogene
cluster”.
o Molecular piracy.
How many serotypes does HBV have?
Two
This HV is ...
• Associated with tumors:
✔ Burkitt’s lymphoma
✔ Nasopharyngeal carcinoma
EBV
EBV Infects and establishes
latency in _____.
B-cells
True or False
EBV is Often asymptomatic children
True
EBV: Pathology/Clinical Manifestations
Barfing, tonsillar exudate, skin rash, fever, accumulation of atypical lymphocytes
Burkitt’s Lymphoma Quickee
Proliferative B-cell
disease.
• Rate of cell division
among highest in
human tumors.
• C-Myc mutation linked
to Burkitt’s Lymphoma.
• Role of EBV still
under study.
“The Commonest Children’s
Cancer in Tropical Africa”
Burkett's Lymphoma
True or False

Shingles may provide chronic
stimulus of B-cells that
carry latent EBV.
False- It's Malaria that is the constant stimulus
EBV: Genomic Structure Quickee
dsDNA; 172 kb
• Long & short repeat
regions
differentiate EBV-1
from EBV-2.
• Replication occurs
in the nucleus
Infection Cycle in B-cells
Mimics normal
B-cell differentiation
• Virus appears to drive B-cell differentiation into “long-lived memory cells”
Why cause differentiation
into memory cells? (Burkitts lymphoma)
EBV not recognized by immune system
Role of EBNA-1 (Epstein-Barr
nuclear antigen) in replication?
EBNA-1 piggybacks on host cell chromosomes,mediating viral replication
What does EBV have to do with cancer?
Burkitt’s Lymphoma cells have a “germinal centre”
phenotype
- microscopically distinguishable regions of lymphoid tissue where B
cells expand and undergo selection
• It is thought that c-myc (host cell cycle regulation protein)
translocation occurs during somatic
hypermutation
- process during B cell differentiation to mutate variable regions
of immunoglobulin genes to recognize foreign elements

EBV is a virus that infects B lymphocytes, causing them to grow and divide and extending their lifespan. In most people, it causes infectious mononucleosis, also known as "mono." Mono is usually not a serious disease because the patient’s T cells destroy B cells infected with EBV. But when people have a T-cell deficiency (which may be present at birth, secondary to HIV infection, or caused by drugs that decrease their function such as after a transplant), the EBV-infected B cells grow and accumulate. These growing cells have an increased risk for developing DNA mutations or gene translocations. If these changes affect certain oncogenes or tumor suppressor genes, lymphoma will develop.
_____is a process during B-cell differentiation, during
which mutations are actually part of the process
somatic hypermutation
Role of C-Myc (host cell cycle regulation protein)
• Oncogene
• Normal cell C-Myc gene
functions in regulation of:
- Cell cycle and growth
• Mutation of C-Myc causes “gain
of function” phenotype
• BUT- rarely (if ever) is cancer
associated with just one
mutated gene
EBV Host Cell Entry - whats the receptor?
Main receptor is viral gp350, binding to CD21
- MHC Class II co-factor
- Important co-receptor is gp42, thought to
mediate membrane fusion
Much less know about entry in epithelial cells.
EBV Genome & Replication qUICKEE
dsDNA linear genome in virion
- DNA circularizes upon entry into
nucleus
-172 kb, encodes over 100 viral proteins
-Replication occurs in the nucleus,
associated with viral replication
compartments
-which may block host cell DNA
replication
-Compartments dissociate when vDNA is
packed into nucleocapsid in nucleus
- Virion packaged in cytoplasmic vesicles
Protein of EBV
UGH
EBV can transform resting B-cell to Post-Immortal B-cell in vitro

How?
Resting B-cell
Pre-Immortal B-cell
Post-Immortal B-cell
Tumorigenic Cell

Strong Telomerase Upregulation
Activity Critical
-Telomeres cap chromosomes, and serve to regulate how many times a cell can replicate
- Telomerase maintains/ increases telomere length

* c-Myc translocation
causes this too!
Role of EBNA-1
Burkitt’s Lymphoma tissue only expresses
one viral protein: EBNA-1
- EBNA-1 is also the only protein expressed in dividing memory B-cells
- Expressed in all EBV-related
malignancies
• EBNA-1 is critical to transcription and
replication of the virus
- it’s also critical to regulating the push from naïve infected B-cell to long-lived memory cell