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4 Cards in this Set

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  • Back

Methods to Assess Tumors for Mutations, etc.

Chromosomes: Karyotype, Array CGH, FISH


Sub-microscopic DNA mutations: Allele specific PCR, qRT PCR, Pyrosequencing, Southern Blot/MLPA, Sanger sequencing, Next gen. seq.


Epigenetic: Hypermethylation Analysis


RNA: Expression arrays, Rev. Transcriptase PCR


Protein: Immunohistochemistry

Detection of molecular biomarkers in order to

- Detect cancer


- Determine prognosis


- Monitor disease progression


- Monitor therapeutic response

NGS (Next Generation Sequencing) / Massively Parallel Sequencing

Genomic DNA


-> fragmented library of DNA pieces all sequenced at the same time


-> individual reads aligned to reference sequence


=> whole-genome sequence (~ consensus of aligned reads)

Personalized Medicine

Is the best.