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28 Cards in this Set
- Front
- Back
What are oxidation and reduction reactions? Why are these important in the ETC?
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Oxidation-->releases free energy--LOSS of electrons
Reduction-->gains free energy--GAIN of electrons In digestion, nutrients are broken down into smaller components: Fats-->FA's Carbs-->simple sugars Protein-->a.acids --These molecules enter glycolysis and TCA cycle, releasing tons of energy along the way. --NAD and FAD get electrons from enzymes in Kreb's (reduction)-->become NADH/FADH2 ("energy carriers")-->dump electrons into ETC (oxidation)-->converted back into NAD/FAD-->can be used again |
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What does the Nernst equation help calculate?
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Remember--reduction potential is the tendency to acquire electrons.
--The nernst equation characterizes the relationship b/w the standard reduction potential of a redox couple under standard conditions. E=Eo + RTln (oxidant)/(reactant) -->This predict electron transfer for redox pairs liked together. |
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Define reduction potential and how it can determine direction of electron transport
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--Reducation/redox potential (delta-E)-->the tendancy of a molecule to acquire electrons (be reduced).
--The more positive the reduction potential, the greater the affinity to grab electrons (be reduced). --The more negative the reduction potential, the greater the affininy to give up electrons (be oxidized) --STANDARD reduction potential (delta-E*) is the reduction potential under standard conditions. --It can be used to calculate free energy change (delta-G)--which is proportional to the difference in redox potentials of both redox pairs. delta-G*=-n(F)(delta-E*) --The more positive the delta-E (the more the molecule wants to be reduced), the more negative the delta-G-->positive delta-E indicates an energetically favorable process. --ETC has a delta-G* of around -52 kcal/mol. This is super-exergonic, which is what you want. ATP hydrolysis has a delta-G* of around 7.3 kcal/mol--not so exergonic. Shows you that ETC is an energetically favorable process. |
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What is basic mitochondrial structure? Where does ETC take plate?
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Mitochondria-->Outer (permeable, smooth) and inner (impermeable, folds called "cristae") membranes
Have intermembrane space and matrix ETC proteins are embedded in the inner membrane-->ATP synthase projects into matrix where ATP is made. |
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What is purpose of ETC? What is basic mechanism?
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ETC proteins transfer energy by taking electrons from NADH/FADH2 and passing them down the line.
Six entities to the ETC: 1) Complex I (NADH dehydrogenase) 2) Complex II (succinate dehydrogenase) 3) Complex III 4) Complex IV (Cytochrome oxidase) 5) Coenzyme Q 6) Cytochrome C Mechanism... 1) NADH binds FMN on complex I (NADH Dehydrogenase)-->oxidized to NAD-->2 electrons passed to iron-sulfer-->4 hydrogens pumped into intermembrane space. 2) Electrons are passed from complex I-->coenzyme Q 3) Electrons are passed from coenzyme Q-->complex III-->4 hydrogens pumped into intermembrane space 4) Electrons passed from complex III-->cytochrome c-->complex IV (cytochrome oxidase)-->2 hydrogens pumped into intermembrane space-->electrons bind O2 to form water in matrix. This step REMOVES electrons from system (by combining them w/O2-->water), so the ETC can continue. This is why you need O2 for ETC to work. What about complex II? --Not a part of the NADH pathway--is actually an enzyme in the TCA cycle. --NO proton pumping. --Funnels electrons into ETC by removing electrons from succinate and transferring them (via FAD) to coenzyme q. NADH complex I-->coenzyme q-->complex III-->cytochrome c-->complex IV-->h20! |
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Describe the chemiosmotic model and its importance in maintaining the ETC
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--ETC pumps hydrogens into intermembrane space at each complex (except II).
--This process creates an electrical gradient (more positive charge outside membrane) and pH gradient (lower pH-more H+s outside membrane). --Energy generated by this proton gradient can drive ATP synthesis. --ATP synthetase makes ATP, using energy of the proton gradient. After protons have been pumped out of matrix, they can re-enter matrix thru ATP synthetase-->forming ATP AND dissipating their own pH and electrical gradients. (from lippencott's) --ETC won't work if protons can't be pumped into intermembrane space--protons can't be pumped if chemiosmotic gradient is bad--so chemiosmotic gradient can LIMIT electron transport ("respiratory control") |
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What is respiratory control?
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--The limitation placed on ETC by chemiosmotic gradient.
--If gradient is destroyed, respiratory control is abolished, and ETC can run freely. ETC-->DRIVEN by free energy from energy carriers--obtained from substrates ETC-->RESTRICTED by chemiosmotic gradient (respiratory control)--electron transport can only go as fast as energy is lost from the gradient. ANALOGY from class.. Blowing up a balloon until it is full of air--cannot add anymore air, so you are just maintaining pressure. --If someone pokes a hole in the balloon, you have to work harder to maintain the pressure from before. --If you plug one of the holes, you don't have to work as hard. ETC applies "pressure", holding gradient at constant level. "you blowing up the balloon"-ETC air flow into balloon--electron flow in ETC |
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What is role of ATP synthase in ETC?
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--Exploits the chemiosmotic gradient to make ATP.
--ATP synthase structures are embeeded in the membrane. --When ADP and phosphate are available, they bind catalytic sites on ATP synthase--causes channel to open and PROTONS come back into matrix (DOWN their conc. gradient)--energy released helps make ATP! --So, it decreases the gradient, so ETC can continue. |
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Why is cytochrome oxidase (complex IV) so important?
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It reduces oxygen to water, using the electrons.
--It removes electrons from the system, so ETC can keep running. --That is why oxygen is so important--it "drains" electrons from the system, so the carriers don't become reduced and ETC can keep chugging along. |
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What is the concentration gradient in "healthy" mitochondria?
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In normal, healthy mitochondria, the chemiosmotic gradient is maintained.
That's why uncouplers are so bad for the cell--they destroy the concentration gradient, so your ETC can never relax--there are no controls. |
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What is respiratory control index (RCI)?
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OVERALL--ETC stops when ADP is used up.
--You can calculate the ratio of-- O2 consumption w/ADP present/O2 consumption w/ADP absent. --It indicates how tightly the ETC is regulated by phosphorylation--in english, it tells you how much the ETC is affected by ADP. --Larger RCI--better regulated (coupled) --Smaller RCI--less regulated (uncoupled) --OVERALL--if an ETC is uncoupled, this means that something has made it possible for H's to sneak back into matrix--this destroys the electrochemical gradient. This means less ATP is made. So..a low RCI is not controlled by phosphorylation, because it can't make any ATP--it can never get the gradient it needs to generate energy. |
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What is the P:O ratio?
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Ratio of:
ADP added: O2 consumed -Tells you number of ATP molecules made/O2 (ie: number of ATP molecules made/electron pair) **NADH--P:O=2.5. So, 2.5 ATP molecules/electron pair. NADH (pumps 10 protons across membrane--3 protons--1 ATP (+1 to move molecule), 10/4=so 2.5 ATP made!)--P:O=2.5 ATP **Succinate=1.5 ATP/electron pair. (pumps 6 protons, b/c starts at complex 2--3 protons--1 ATP (+1 to move molecule--6/4, so 1.5 ATP made! )--P:O=1.5 ATP |
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What are the types of mitochondrial poisions?
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1) ETC inhibitors
2) Uncoupling agents 3) FoF1-ATPase Inhibitors |
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What are ETC inhibitors?
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--They bind to ETC and PREVENT ELECTRON TRANSFER down the chain.
--They each act specifically at one complex. --Causes reduction of upstream molecules. --Bypassing block can restore ETC activity. |
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What are the ETC inhibitors? Where do they work?
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1) Rotenone--complex I (non-competitive inhibitor)
2) Malonate--complex II--is really an "enzyme inhibitor"--no complex II-->feedback inhibition to TCA-->stops TCA, stops ETC 3) Antimycin/myxothiazole--complex III 4) Cyanide/Azide--complex IV (reversible inhibitor) Really Mean Actors May Chide Actresses |
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What are uncoupling agents?
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--ETC no longer regulated by chemiosmotic gradient.
--ETC is uninibited due to complete dissipation of chemiosmotic gradient-no respiratory control--keeps the ETC on constantly and working ten times harder. |
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What are the uncoupling agents?
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1) DNP--protein ionophore--binds proteins on one side and "sneaks" them in the other side.
2) FCCP--protein ionophore--acts in a similar way. |
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What are FoF1 ATPase inhibitors? What is the main one we learned?
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--EX: Oligomycin.
--Binds ATP synthase-->blocks proton channel. --Prevents electron transport by blocking movement of protons through ATP synthase. --When uncoupler is added, proteins leak into the matrix w/out ATP synthase and ETC will continue tirelessly, but can never generate any kind of substantial gradient. |
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What is the glycerophosphate shuttle?
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--Way to get NADH across inner mitochondrial membrane from glycolysis.
1) shuttle transfers 2 electrons from NADH in cysotol-->reduces DHAP-->G-3-P (a-glycerophosphate dehydrogenase) 2) G-3- P crosses mitochondrial membrane. 3) G-3-P donates electrons to flavoprotein dehydrogenase (mitochondrial G-3-P dehydrogenase)-->produces FADH2. NADH-->FADH2 (only get 1.5 molecules of ATP generated) |
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What is malate-aspartate shutte?
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--Produces mitochondrial NADH from cytosolic NADH.
1) NADH reduces OAA-->malate 2) malate enters mitochondria using malate/a-ketoglutarate transporter 3) malate-->OAA + NADH (using malate dehydrogenase) 4) NADH used in ETC NADH-->NADH (2.5 ATPs produced) |
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How do ions get across inner mitochondrial membrane?
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ETC need lots of anions (ADP, pyruvate)
--TRANSLOCASES transport these proteins--balance the anionic charge during transport. Can be antiports or symports. Antiports-->2 substrates in opposite directions--exchanges an anion for an anion. Symport-->2 substrates in same direction-->moves proton+anion at once. |
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What are some physiological or pathological uncouplers?
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1) Exercise/ increased body heat--need more energy-->more ETC-->extra energy released as heat.
2) Hyperthyroidism--make less ATP from fuels--more heat. 3) Brown adipose tissue (in babies)--uses THERMOGENIN or UCP-1 to uncouple--generate heat to keep babies warm. 4) Salicylate--lots of aspirin ingestion--can uncouple ETC. |
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What is significance of Riboflavin deficiency?
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--REDOX reactions essential to ETC use two flavins as electron acceptors (FMN-complex I and FAD-complex II)
--If these are deficient, ETC decreases and you get MEGAMITOCHONDRIA in tissues. |
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What is significance of anthracycline toxicity?
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-Anthracyclines are effective cancer tx.
--Too much can impair mitochondrial fxn. |
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What is significance of apoptosis?
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--Mitochondria are important in apoptosis.
--triggered by internal/external stimuli --when mitochondria receive these stimuli, the outer membrane releases cytochrome c-->leaked cytochrome c activates a protease cascade-->leading to its demise. --Overall, have important role in apoptosis. |
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What is significance of ischemia/hypoxia?
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--Tissues w/high ATP demands hve more mitochondria
--Mitochondria can also have densly packed cristae that have a ton of ETC proteins. --These tissues are most sensitive to ischemia/hypoxia-->decreased O2-->decreased ETC. |
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What are OXPHOS diseases?
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Diseases involving oxidative phosphorylation (ETC).
--Mitochondrial myopathies--caused by damage to mitochondria. Examples: MERRF-->spontaneous muscle jerking--HUGE mitochondria, red fibbers, dementia, impaired energy metabolism. Due to point mutation in mitochondrial mRNA from mom. LHON--also maternal inheritance Affects CNS (optic nerve--vision loss), single base change coding for subunits of complex I or cytochrome b decreases mitochondrial fxn. |
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What are some BIG ETC concepts (7)
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--ETC can't transport electrons if protons can't be pumped into intermembrane space.
--ETC driven by proximity of carriers (each subsequent carrier is more electronegative--wants the electrons MORE)--not driven by purpose to maintain gradient. --O2 cnsumption results from ETC and does not require ATP. --As long as substrate is present, chemiosmotic gradient is maintained by mitochondria (in healthy cells) --ATP synthase is NOT part of ETC. --Protons entering matrix thru ATP synthase do not reduce O2 --Activation of ATP synthase increases the rate of energy removal from gradient--ETC tries to maintain this gradient. |