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802 Cards in this Set

  • Front
  • Back
Explain Aristoteles’ view
Spontaneous Genesis: living organisms could develop out from nonliving matter
Anton van Leeuwenhoeck
Early experiments, covex glass lenses. "First microscopes"
Francesco Redi’s experiment
Containers with meat, covered and uncovered, flies etc. (He said. We are "redi" with the meat, Francesco Redi.)
Edward Jenner
Vaccination cowpox - Inmunity for disease. First to conduct test in immunity with dead pathogenic cells
Louis Pasteur
(1860) S shaped flasks, dust particles trapped -> preventing bacteria get into the broths
Sergei Winogradsky
Winogradsky column (display of chemoautotrophy and microbial ecology)
Robert Koch (1872) and his team.
Germ Theory of Disease. THEY were busy with disease Anthrax, infected healthy mice with microbes and observed symptoms, resistant ‘spores’, agar-based media to cultivate and study bacteria.
Koch's 1st postulate:
The microorganism or other pathogen must be present in all cases of the disease
Koch's 2nd postulate:
The pathogen can be isolated from the diseased host and grown in pure culture
Koch's 3rd postulate:
The pathogen from the pure culture must cause the disease when inoculated into a healthy, susceptible laboratory animal
Koch's 4rd postulate:
The pathogen must be re-isolated from the new host and shown to be the same as the originally inoculated pathogen
The resolution of a light microscope (LM) is determined by... (2 factors)
1. numerical Aperture of its lens system
2. Wavelength of the light
Maximum resolution of a light microscope (LM) is about...
about 0.2 micrometers.
the Focal point is:
It is the place where the Image is focused after that light is bent by lenses
microscope Resolution refers to:
Resolution is the ability of a lens to Separate or Distinguish small objects that are close together;
The major factor determining the Resolution is:
the Wavelength of light used
Absorption (explain):
When light passes through an object the intensity is reduced depending upon the color absorbed
Refraction (explain)::
Direction change of a ray of light passing from one transparent medium to another with different optical density
Diffraction:
Light rays bend around Edges, new wavefronts are generated at sharp edges.
The smaller the aperture the lower the definition
Dispersion:
Separation of light into its constituent wavelengths when entering a transparent medium -the change of refractive index with wavelength such as the spectrum produced by a prism or a rainbow
3 ideas about transmission electron microscopy (TEM)
1.TEM is operated at high vacuum.
2. TEM focuses beams (ray) of electrons
3. TEM has resolution (0.5nm) about 1,000 times better than light microscope (LM) (0.2 mm)
Procaryotic cells (P.C.), explain
They are cells with lack a true, membrane-enclosed nucleus; The genetic material is located in a nucleoid.
bacteria and archaea are procaryotic;
P.C. vary in size. Are they generally smaller or bigger than eucaryotic cells?
Procaryotic cells are generally SMALLER than most eucaryotic cells;
Wich size are Bacterial?
They are extremely small and are most conveniently measured in microns (10-6m = micro m). Generally are unicellular organisms
How Bacteria reproduce themselves?
by Binary Fission.
Explain Gram stain procedure
It is a Differential staining procedure.
It divides bacteria into gram-positive/gram-negative groups.
Gram stain is baded on...(2 factors)
1. on ability to retain crystal violet when decolorized with an solvent.
2. on the chemical and physical properties of their cell walls.
Gram-negative and Gram-positive cells. 1 difference and 1 similarity betwwen.
- They differ in cell walls.
- Both use flagella for locomotion.
In P.C, where is located the plasma membrane?
Plasma membrane is located inside the cell wall and separated from it by a periplasmic space
In P.C.. where the genetic material is localized?
The genetic material is localizedIn a discrete region: the nucleoid
In P.C. ."Selectively permeable barrier, mechanical cell boundary, nutrient/waste transport, place of many metabolic processes as respiration/photosynthesis, detection of environmental cues for chemotaxis"
Plasma membrane
In P.C. "Buoyancy for floating in aquatic environments"
Gas vacuole
In P.C. "Protein synthesis its a function of.."
Ribosomes
In P.C. who does "Storage of carbon, phosphate, and other substances"
Inclusion bodies
In P.C. where is the Localization of genetic material (DNA)
Nucleoid
In P.C. Who Contains hydrolytic enzymes and binding proteins for nutrient processing and uptake?
Periplasmic space
In P.C. Who gives bacteria shape and protection from lysis in dilute solutions? ah?
The Cell wall
In P.C. Who is famous for "Resistance to phagocytosis, adherence to surfaces"
Capsules and slime layers
In P.C. who is "Attached to surfaces, and participate on bacterial mating"
Fimbriae and pili
In P.C., the Movement is made for?
Flagella
In P.C. Survival under harsh environmental conditions
Endospore
In P.C. Who match with this def. "Phospholipid bilayer of lipids and proteins with hydrophilic surfaces and a hydrophobic interior (amphipathic)";
Plasma membrane
most bacterial membranes lack of...
Sterols
Function of plasma membrane in P.C.
The plasma membrane acts as a boundary: Holding cell constituents together and keeping other substances from entering
In P.C. substance between the membrane and the nucleoid
Cytoplasmic matrix
In P.C. The organelle where protein synthesis occurs; the message encoded in mRNA is translated here
Ribosome
In P.C.
Small, closed circular DNA molecules. Replicate independently of the bacterial chromosome, carry genes
Plasmids
Polysaccharide polymer found in bacterial cell walls; polysaccharide chains cross-linked by peptide bridges
Peptidoglycan
Relatively thin cell wall... Gram+ bacteria oder Gram- bacteria ?
Gram -
Cell wall is composed largely of peptidoglycan. Gram+ Bacteria oder Gram - bacteria?
Gram +
Noncovalently attachment in cell wall. Gram+ or Gram-Bacteria?
Gram -
A thin, threadlike appendage on many procaryotic and eucaryotic cells that is responsible for their motility. We are here talking about Mr...
Flagella
Types of Flagella:
Monotrichous:a single flagellum. Amphitrichous:a single flagellum at each pole. Lophotrichous:a cluster (tuft) of flagella at one or both ends. Peritrichous- plenty of flagella scattered evenly on the surface of the cell
This enzyme attacks peptidoglycan by hydrolyzing the bond C-N
Lysozyme
They are osmotically sensitive. If they are transferred to a dilute solution, they will lyse due to uncontrolled water influx
Protoplasts and spheroplasts (maurice example)
It inhibits peptidoglycan synthesis in the cell wall
Penicillin
The Bacterial Endospore, explain
It is a special, resistant, dormant structure which enables bacteria to resist harsh environmental conditions
prokaryotic cells - genetic material
usually found in single circular chromosome
prokaryotic cells - location of genetic information
nuclear region (nucleoid)
prokaryotic cells - nucleolus
absent
prokaryotic cells - histones
absent
prokaryotic cells - extrachromosomal dna
in plasmids
prokaryotic cells - mitotic spindle
absent
prokaryotic cells - plasma membrane
fluid mosaic structure lacking sterols
prokaryotic cells - internal membranes
only in photosynthetic organisms
prokaryotic cells - endoplasmic reticulum
absent
prokaryotic cells - respiratory enzymes
cell membrane
prokaryotic cells - chromatophores
present in photosynthetic bacteria
prokaryotic cells - chloroplasts
absent
prokaryotic cells - golgi apparatus
absent
prokaryotic cells - lysosomes
absent
prokaryotic cells - peroxisomes
absent
prokaryotic cells - ribosomes
70S
prokaryotic cells - cytoskeleton
absent
prokaryotic cells - cell wall
peptidoglycan found on most cells
prokaryotic cells - external layer
capsule or slime player
prokaryotic cells - flagella
when present, consist of fibrils of flagellin
prokaryotic cells - cilia
absent
prokaryotic cells - pili
present as attachment or conjugation pili in some prokaryotic cells
prokaryotic cells - cell division
binary fission
prokaryotic cells - sexual exchange of genetic material
not part of reproduction
prokaryotic cells - sexual or asexual reproduction
only asexual reproduction
eukaryotic cells - genetic material
typically found in paired chromosomes
eukaryotic cells - location of genetic information
membrane-enclosed nucleus
eukaryotic cells - nucleolus
present
eukaryotic cells - histones
present
eukaryotic cells - extrachromosomal dna
in organelles, such as mitochondria and chloroplasts, and in plasmids
eukaryotic cells - mitotic spindle
present during cell division
eukaryotic cells - plasma membrane
fluid mosaic structure containing sterols
eukaryotic cells - internal membranes
numerous membrane-enclosed organelles
eukaryotic cells - endoplasmic reticulum
present
eukaryotic cells - respiratory enzymes
mitochondria
eukaryotic cells - chromatophores
absent
eukaryotic cells - chloroplasts
present in some
eukaryotic cells - golgi apparatus
present
eukaryotic cells - lysosomes
present
eukaryotic cells - peroxisomes
present
eukaryotic cells - ribosomes
80S in cytoplasm and on endoplasmic reticulum, 70S in organelles
eukaryotic cells - cytoskeleton
present
eukaryotic cells - cell wall
cellulose, chitin, or both found on plant and fungal cells
eukaryotic cells - external layer
pellicle, test, or shell in certain protists
eukaryotic cells - flagella
when present, consist of complex membrane-enclosed structure with "9+2" microtubule arrangement
eukaryotic cells - cilia
present as structures shorter than, but similar to, flagella in some eukaryotic cells
eukaryotic cells - pili
absent
eukaryotic cells - cell division
mitosis and/or meiosis
eukaryotic cells - sexual exchange of genetic material
meiosis
eukaryotic cells - sexual or asexual reproduction
sexual or asexual reproduction
all prokaryotes are
bacteria
eukaryotes include
all plants, animals, fungi, and protists
name of two prokaryotic domains
arachea and bacteria
do arachea cause disease?
not as far as we know at this point
average range of size of prokaryotes
0.5 to 2.0 micrometers in diameter
bacteria, surface-to-volume ratio
large
three basic shapes of bacteria
spherical, rodlike, and spiral
coccus
sphere
bacillus
rod
vibrio
comma-shaped
spirilium
rigid, wavy shape
spherochete
corkscrew shaped
diplo-
division in one plane; cells in pairs
strepto-
division in one plane; cells in chains
tetrads
division in two planes; four cells arranged in a cube
sarcinae
division in three planes; eight cells arranged in a cube
staphylo-
division in random planes; grapelike clusters
purpose of cell wall
maintains characteristic shape and prevents cell from bursting when fluids flow into the cell via osmosis
peptidoglycan is also called
murein
most important component of bacterial cell wall
peptidoglycan
outer membrane
bilayer membrane found on outermost layer of cell wall in gram-negative bacteria
lipopolysaccharide (LPS) aka
endotoxin
LPS
important part of outer membrane that is not released until cell walls of dead bacteria are broken down
LPS composition
polysaccharaides and lipid A (lipid A conveys toxic properties)
periplasmic space
gap between cell membrane and cell wall
periplasmic space is active area of
cell metabolism
periplasm
petidoglycan, protein constituents, and metabolites found in the periplasmic space
peptidoglycan (murein) comprised of
two alternating sugar units: (1) n-acetylglucosamine (NAG) and (2) n-acetylmuramic acid (NAM)
peptidoglycan (murein) sugars are joined by
short peptide chains that consist of four amino acids (tetrapeptides)
outer membrane is attached to peptidogycan by
a continuous layer of lipoprotein molecules
proteins called _____ form channels through the OM
porins
the outer membrane contains _______ and ______
surface antigens and receptors
periplasmic space contains
the cell wall, digestive enzymes and transport proteins
gram-positive bacteria lack both _____ and _____
an OM and a periplasmic space
gram-positive bacteria have a relatively thick layer of
peptidoglycan (60-90%)
gram-negative bacteria have
a more complex cell wall with a thin layer of peptidogycan (10-20%)
acid-fast bacteria, characteristics
thick, like that of gram-positive bacteria, but has much less peptidoglycan and about 60% lipid
acid-fast bacteria are found in the genus
Mycobacterium sp.
cell wall of acid-fast bacteria is mainly composed of
lipids
the lipid component of acid-fast bacteria is
mycolic acid
acid-fast bacteria stain
gram-positive
antibiotic penicillin blocks what to damage cell walls?
the final stages of peptidogycan synthesis
enzyme lysozyme digests what?
peptidoglycan
lysozyme is found
in tears and other human body secretions
bacterial cells typically contain in their cytoplasm
ribosomes, nucleoid region, vacuoles, and (some) endospores
ribosomes consist of
ribonucleic acid (rna) & protein
ribosomes serve as sites of
protein synthesis
ribosomes are abundant in
the cytoplasm of bacteria
# of ribosomes in bacteria and eukaryotes
70S in bacteria; 80S in eukaryotes
long chains of ribosomes are called
polyribosomes
streptomycin & erythromycin function against bacteria by
binding specifically to 70S ribosomes and disrupting bacterial protein synthesis
nuclear region/nucleoid consists of
dna, rna, & protein
dna in bacteria is structured as
usually one large, circular chromosome
vibrio cholerae nuclei contain
two chromosomes, one large and one small
plasmids are
extrachromosomal pieces of smaller, circular dna
photosynthetic bacteria and cyanobacteria contain
internal membrane systems, aka chromatophores
chromatophores are derived from
the cell membrane and contain the photosynthetic pigments
nitrifying bacteria also have
internal membranes
inclusions
small bodies inside the bacterial cytoplasm
granules
not membrane bound and contain densely compacted substances (glycogen or polyphosphate)
vesicles
specialized membrane-enclosed structures that contain gas or poly-B-hydroxybutyrate (lipid)
endospores
centralized resting structure found in bacteria such as Bacillus sp. and Clostridium sp.
endospores function to
help the bacterial cells survive when conditions become unfavorable
endospores are highly resistant to
heat, drying, acids, bases, certain disinfectants and radiation
external structure of bacteria
bacteria may have structures that extend beyond or surround the cell wall
types of external bacterial structures
flagella and pili (which extend from the cell membrane through the cell wall and beyond) and capsules and slime layers (which surround the cell wall)
bacterial flagella - monotrichous
bacteria with a single polar flagellum located at one end (pole)
bacterial flagella - amphitrichous
bacteria with two flagella, one at each end
bacterial flagella - peritrichous
bacteria with flagella all over the surface
bacterial flagella - atrichous
bacteria without flagella
bacterial flagella - lophotrichous
two or more flagella
endosymbiotic theory
organelles of eukaryotic cells arose from prokaryotic cells that had developed a symbiotic relationship with the eukaryote-to-be
symbiosis
relationship between two different kinds of organisms that live in close contect
endosymbiosis
two different kinds of organisms living in close contact, where one lives inside the other
simple diffusion
the net movement of particles from a region of higher to lower concentration
facilitated diffusion
diffusion down a concentration gradient and across a membrane with the assistance of special pores or carrier molecules
osmosis
the diffusion of water from an area of higher water concentration to an area of lower water concentration through a semipermiable membrane
active transport
movemebt of molecules and ions against concentration gradients from regions of lower concentration to ones of higher conecntration; requires ATP
osmotic pressure
pressure required to prevent the net flow of water by osmosis; the least amount of hydrostatic pressure req'd to prevent movement of water from solution into pure water is the osmotic pressure of the solution
positive chemotaxis
net result is movement towards the attractant (nutrients)
negative chemotaxis
net result is movement away from the repellent
pilus, pili
tiny, hollow projections used to attach bacteria to surfaces; not involved in movement
F-pili
long conjugation pili, "sex" pili
fimbriae
short attachment pili
glycocalyx
all polysaccharide/polypeptide-containg substances found external to cell wall, including capsules, slime layers
all bacteria have at least ________ layer
a thin slime layer
capsule
protective structure outside the cell wall of the organism from which it is secreted
capsules found in
only certain bacteria
chemical composition of capsules
unique to the strain of bacteria that secreted it
encapsulated bacteria are able to
evade host defense mechanisms (phagocytosis)
slime layer
less tightly bound to cell wall; thinner than a capsule
slime layer, function of
protects cell against drying; traps nutrients and binds cells together (biofilm)
endocytosis
moving substance by forming an invagination and surrounding substances from outside the cell
exocytosis
vesicles inside cell fuse with plasma membrane and extrude contents from the cell
Do prokaryotes or eukaryotes contain nucleic acids?
Both
Do prokaryotes or eukaryotes contain proteins?
Both
Do prokaryotes or eukaryotes contain lipids?
Both
Do prokaryotes or eukaryotes contain carbohydrates?
Both
Do prokaryotes or eukaryotes have DNA that is not enclosed within a membrane and is one circular chromosome?
Prokaryotes
What to prokaryotes and eukaryotes use the same kind of chemical reactions for?
To metabolize food, build proteins and store energy
Do prokaryotes or eukaryotes have DNA that is not associated with histones but with other proteins?
Prokaryotes
Do prokaryotes or eukaryotes lack membrane enclosed organelles?
Prokaryotes
Do prokaryotes or eukaryotes have cell walls that almost always containt he complex polysaccharide peptidoglycan?
Prokaryotes
Do prokaryotes or eukaryotes usually divide by binary fission?
Prokaryotes
Do prokaryotes or eukaryotes have DNA that is found in the cell's nucleus?
Eukaryotes
Do prokaryotes or eukaryotes have DNA that is associated with histones?
Eukaryotes
Do prokaryotes or eukaryotes have membrane enclosed organelles such as mitochondria?
Eukaryotes
Do prokaryotes or eukaryotes have cell walls, when present, are chemically simple?
Eukaryotes
Do prokaryotes or eukaryotes usually divide by mitosis?
Eukaryotes
What does coccus mean?
Sphere/Round
What does bacillus mean?
staff/rod-shaped
What does spirilla mean?
rigid with a spiral/corkscrew shape
What does Strepto- mean?
chains of cells
What does Staphylo- mean?
Clusters of cells
What does Diplo- mean?
two cells
What does tetrad mean?
four cells
What does sarcinae mean?
Cube of 8 cells
What does vibrio mean?
Curved Rod
What does Spirochete mean?
Flexible with spiral shape
What is glycocalyx?
a gerneral term used for substances that surround cells.
What is glycocalyx composed of?
polysaccharide, polypeptide or both
What does a glycocalyx capsule do?
contributes to the degree to which a pathogen causes disease and protects from phagocytosis.
What is the function of extracellular polysaccharide (EPS)?
enables a bacterium to attach to a variety of surfaces.
How do prokaryotic flagellum move?
clockwise or counterclockwise around its long axis
How do Eukaryotic flagellum move?
in a wavelike motion
What is taxis?
the movement of a bacterium toward or away from a particular stimulus.
What are axial filaments?
bundles of fibrals that arise at the ends of the cell beneath an outer sheath and spiral around the cell.
What is the function of fimbriae?
enables a cell to adhere to surfaces, including that of other cells.
What is the function of pili?
to join bacterial cells in preparation for the transfer of DNA from one cell to another.
Are pili or fimbriae longer?
Pili
How man pili are there per cell?
one or two
How many fimbriae are there per cell?
A couple to hundreds
What is the rigidity of the prokaryotic cell wall?
semi-rigid
What is the function of the prokaryotic cell wall?
gives structure to and protects the cell.
What does the prokaryotic cell wall surround?
the underlying plasma membrane.
What does the prokaryotic cell membrane prevent?
Osmotic Lysis.
What does the prokaryotic cell wall contribute to?
the ability to cuase disease in some species.
What is the prokaryotic cell wall a site of action for?
some antibiotics
What is the prokaryotic cell wall in bacteria made of?
peptidoglycan.
How many layers of peptidoglycan does a gram positive cell wall have?
Many
Do gram positive cell walls have teichoic acids?
Yes
How many layers of peptidoglycan does a gram negative cell wall have?
one or a few
Do gram positive cell walls have teichoic acids?
No
Are gram positive or gram negative cells more susceptible to rupture?
gram negative
What is Peptidoglycan?
it's what the bacterial wall is composed of.
What does Peptidoglycan consist of?
a repeating disaccharide attached by polypeptides.
What is endotoxin?
part of the outer portion of the cell wall of most gram negative bacteria.
When is endotoxin released?
Upon destruction of the cell.
How does alcohol affect gram positive cells during gram staining?
it dehydrates the peptidoglycan
How does alcohol affect gram negative cells during gram staining?
dissolves outer membrane and leaves holes in peptidoglycan.
How does exposure to lysozyme affect the cell?
it damages it
How to antibiotics such as penicillin affect the cell?
destroys the bacteria by interfering with the formation of the peptide cross-bridges of peptidoglycan, preventing the formation of a functional cell wall.
Where does the phospholipid bilayer of the plasma membrane lie?
Inside the cell wall
Where is the metabolic machinery of the cell located?
On the plasma membrane
Does the plasma membrane of the cell contain peripheral proteins?
Yes
How viscous is the plasma membrane?
as viscous as olive oil.
what way do the phospholipids move in the plasma membrane?
rotate and move laterally.
What is meant meant by the term "selective permeability"?
allows passage of some molecules but not others across the plasma membrane.
What is simple diffusion?
movement of a solute from an area of high concentration to an area of low concentration (down its concentration gradient) until equilibrium is reached.
What is facilitated diffusion?
solute combines with a transport protein in the membrane, to pass from one side of the membrane to the other. The molecule is moving down its concentration gradient.
What is osmosis?
movement of water across a selectively permeable membrane from an area of higher water concentration to an area of lower water concentration.
What is active transport?
requires a transporter protein and ATP. The solute molecule is pumped against its concentration gradient.
What is osmotic pressure?
the pressure needed to stop the movement of water across the membrane.
What is group translocation?
a special form of active transport found only in prokaryotes, movement of a sucstance requires a specific transport protein. The substance is chemically altered during transport to prevent it from escaping the cell.
What does isotonic mean?
a solution in which, after immersion of cell, osmotic pressure is equal across the cell's membrane.
What does hypotonic mean?
a solution that has a lower concentration of solutes than an isotonic solution.
What does hypertonic mean?
a solution that has a higher concentration of solutes than an isotonic solution
What is cytoplasm?
the substance inside the plasma membrane
What percentage of water does cytoplasm contain?
80%
What is the bacterial nucleoid?
the region in a bacterial cell containing the chromosome.
What is a bacterial plasmid?
small, circular DNA molecule that replicates independently of the chromosome.
What shape do bacterial chromosomes have?
short, thick, rod-like bodies
What is a ribosome?
sites of protein synthesis
What #S ribosomes does eukaryotic cells have?
80S
What #S ribosomes does prokaryotic cells have?
70S
Where can membrane-bound ribosomes be found?
In the rough ER.
What are inclusions?
reserve deposits of nurtients that can be used in times of low resource availability
What is step #1 in endospore formation?
The sport septum (invagination of the plasma membrane) begins to isolate the newly replicated DNA and a small portion of cytoplasm. This results in the formation of 2 separate membrane bound structures.
What is step #2 in endospore formation?
the plasma membrane starts to surround the DNA, cytoplasm and the new membrane encircling the material isolated before, forming a double layered membrane bound structure called a forespore
What is step #3 in endospore formation?
thick peptidoglycan layers are laid down between the two membranes of the forespore.
What is step #4 in endospore formation?
a think spore coat of protein forms around the outer membrane of the forespore, which is responsible for the durability of the endospore.
What is step #5 in endospore formation?
when the endospore matures, the cell wall ruptures, killing hte cell and freezing the endospore. It is now metabolically inert.
What does the nucleus of the cell contain?
the cell's DNA
What is the endoplasic reticulum?
network of membranes extending from the nuclear membrane
What happens to the molecules when they go through the Rough ER?
they are processed and sorted and then incorporated into ogranelle membranes, inserted into the plasma membrane or secreted via exocytosis.
What happens to the molecules when they go through the Smooth ER?
Stores and releases
What are ribosomes?
site of protein synthesis
What does the golgi complex do?
modifies, sorts and packages proteins received from the rough ER.
What are lysosomes?
membrane enclosed vesicles that form from the Golgi complex and contain powerful digestive enzymes.
What do lysosomes do?
They digest worn out organelles and their own cellular contents.
What are vacuoles?
space in the cytoplasm enclosed by a membrane called a tonoplast
What do vacuoles do?
they are temporary storage for biological molecules and ions, bring food into cells, provide structural support and store metabolic wastes.
What do mitochondria do?
produce most of the cell's ATP.
Where does the aerobic phaser of cellular respiration occur?
in the mitochondria.
What are the peroxisomes used for?
they contain enzymes that use molecular oxygen to oxidize various organic substances
What do peroxisomes produce and then destroy?
H2O2
What are centrosomes?
Denise areas of cytoplasm containing the centrioles
What is the "endosymbiotic theory"?
the theory that large bacterial cells lost their cell walls and engulfed smaller bacteria.
How do they support the "endosymbiotic theory"?
mitochondria and chloroplasts resemble bacteria in size and shape, they divide on their own and contain their own DNA and have 70S ribosomes.
ABC (ATP-Binding Cassette) transportter
A membrane transport system consisting of three proteins, one of which hydrolyzes ATP, to transport specific nutrients into the cell
Capsule
a polysaccharide or protein outermost layer, usually rather slimy, present on some bacteria
Chemotaxis
Directed movement of an organism toward (positive) or away from (negative) a chemical gradient
Cytoplasmic membrane
the permeability barrier of the cell, separating the cytoplasm from the environment
Endospore
A highly heat-resistant, thick-walled, differentiated structure produced by certain gram-positive Bacteria
Flagellum
A long, thin cellular appendage capable of rotation in prokaryotic cells and responsible for swimming motility
Gas vesicles
Gas-filled cytoplasmic structure bounded by protein and conferring buoyancy on cells
Gram-negative
A prokaryotic cell whose cell wall contains small amounts of peptidoglycan, and an outer membrane, containing lipopolysaccharide, lipoprotein, and other complex macromolecules
Gram-positive
A prokaryotic cell whose cell wall consists chiefly of petidoglycan and lacks the outer membrane of gram-negative cells
Group Translocation
an energy-dependent transport process in which the substance transported is chemically modified during the tranport process.
Lipopolysaccharide (LPS)
lipid in combination with polysaccharide and protein, which forms the major portion of the outer membrane in a gram-negative Bacteria
Magnetosomes
particles of magnetite (Fe3O4) organized into nonunit membrane-enclosed structures in the cytoplasm of magnetotactic Bacteria
Morphology
The SHAPE of a cell: rod, cocus, spirillum, and the like
Outer Membrane
a phospholipid and polysaccharide containing unit membrane that lies external to the peptidoglycan layer in cells of gram-negative Bacteria
Peptidoglycan
A polysaccharide composed of alternating repeats of acetylglucosamine and acetlymuramic acid arranged in adjacent layers and cross-linked by short peptides
Periplasm
a gel-like region between the outer surface of the cytoplasmic membrane and the inner surfance of the lipopolysacharide layer of gram-negative Bacteria
Peritichorous
A pattern of flagellation where flagella are located in many places around the surface of the cell
Phototaxis
Movement of an organism toward light
Polar
In reference to flagellation, having flagella emanating fromone or both poles of the cell
Poly-Beta-Hydroxybutyrate (PHB)
A common storage material prokaryotic cells consisting of a polymer of B-Hydroxybutyrate or anotgher B-alkanoic acid or mixtures of B-alkanoic acids
Protoplast
An osmotically protected cell whose cell wall has been removed
Resolution
The ability to distinguish two objects as distinct and separate
S-Layer
An outermost cell surface layer composed of protein or glycoprotein present on some Bacteria or Archaea
Sterols
Hydrophobic heterocyclic ringed molecules that stregthen the cytoplasmic membrane of eukaryotic cells and a few prokaryotes.
most bacteria range from what in regards to diameter and length
0.2 to 2.0 um in diameter
basic shapes of bacteria
spherical coccus, rod-shaped bacillus and spiral
when cocci divide to reproduce the cells can remain
attached to one another
diplococci
are cocci that remain in pairs after dividing
streptococci
cocci that remain attached in chain like structures
tetrads
cocci that divide in two planes and remain in groups of four
sarcinae
divide in three planes and remain attached in cubelike groups of 8
staphylococci
divide in multiple planes and from grapelike clusters
Most bacilli appear as single rods called
single bacilli
Diplobacilli appear
in pairs after division
what type of bacilli occur in chains
streptobacilli
coccobacilli
are oval and look so much like cocci
vibrio
bacteria that look like curved rods
spirilla
a helical shape like a corkscrew
spirochetes
group of spirals that are helical and flexible
monomorphic
bacteria that maintains a single shape
pleomorphic
can have many shapes not just one
how would you be able to identify streptocci thru a microscope?
because of it's chain like structure
Does a prokaryotic cell contain a nucleus?
No
does prokaryotic cells have membrane-enclosed organelles
no
what does the flagella of a prokaryotic cell consist of
two protein building blocks
glycocalyx in prokaryotes?
is secreted on the surface and is present as a capsule or slim layer. (Sugar coat)
does a prokaryote contain a cell wall?
It's usually present and is chemically complex (includes peptidoglycan)
plasma membrane in prokaryotes
no carbohydrates and generally lacks sterols
does a prokaryote contain a cytoplasm or streaming
no cytoplasmic streaming or cytoskeleton
size of the ribosomes in a prokaryotic cell
70S
the chromosomes (DNA) of prokaryotic cells
are usually single circular chromosome
what do prokaryotic cells lack in their chromosomes
histones
how does cell division occur in prokaryotic cells
binary fission
sexual recombination in prokaryotic cells
does not occur only transfer of DNA
size of a Eukaryotic cell
10-100um in diameter
does a eukaryotic cell contain a nucleus?
yes, a true nucleus (nuclear membrane and nucleoli)
Are membrane-Enclosed organelles present in eukaryotic cells?
Yes, they include (lysosomes, endoplasmic reticulum, mitochondria and chloroplasts)
The Flagella in eukaryotes is
complex, consist of multiple microtubules
is Glcocalyx present in Eukaryotic cells?
yes, but it is only present in cells that lack a cell wall
the cell wall of eukaryotic cells is
chemically simple includes; cellulose and chitin
the plasma membrane of eukaryotic cells is
sterols and carbohydrates that serve as receptors
the cytoplasm of eukaryotic cells have
cytoskeleton and cytoplasmic streaming
what size are the ribosomes of a eukaryotic cell and in organelles?
80S and (70S in organelles
the chromosomes (DNA) of eukaryotic cells are
multiple linear chromosomes with histones
cell division of eukaryotic cells involves
mitosis
sexual recombination in eukaryotic cells involves
meiosis
motility
the ability of an organism to move by itself
what is found in prokaryotic cells but not eukaryotic cells
peptidoglycan
how does most bacteria multiply
by binary fission
what type of bacteria can assume several shapes
pleomorphic
capsules may protect pathogens from what
phagocytosis
what does a flagella consist of
filament, hook and basal body
why would a prokaryotic flagella rotate
to push the cell
what type of protein is an antigen
Flagellar H protein
spiral cells that move by means of an axial filament are called
spirochetes
what is the main difference between axial filaments and flagella
axial filaments wrap round the cell
what helps the cells adhere to surfaces
fimbriae
what is simple diffusion
movement of molecules or ions from an area of high concentration to an area of low concentration
what is facilitated diffusion
proteins function as channels or carriers that facilitate the movement of ions or large molecules across the plasma membrane
osmosis
movement of solvent molecules across a selectively permeable membrane from an area with a high concentration of solvent molecules to an area of low concentration solvent molecules
osmotic pressure
the pressure required to prevent the movement of pure water into a solution containing some solutes
isotonic solution
a medium in which the overall concentration of solutes equals that found inside the cell
hypotonic sol
concentration of solutes is lower than that inside the cell
what can happen if the cell wall is weak and it takes in water?
it can burst or indergo osmoticlysis
what is a hypertonic sol
when its higher concentration outside the cell than inside
what do the terms isotonic, hyper and hypotonic describe
the concentration of solutions outside the cell relative to the concentration inside the cell
active transport
the uses of energy in the form of ATP to move substances across the plasma membrane
once a substance is altered and inside the cell what happens to the plasma membrane
it becomes impermeable to it
what is the cytoplasm
substance in side the plasma membrane of prokaryotic cel
nucleoid
contains a single long, continuous and frequently circularly arranged thread of double stranded DNA
plasmids are
circular extrachromosomal double-stranded DNA molecules
plasmids may be gained or lost without
hurting the cell
what does the cytoplasm consist of
mostly water, organic and inorganic molecules, DNA ribosomes and inclusion
the cytoplasm of prokaryotic cells contain numerous
70s ribosomes (rRNA and protein)
where does protein synthesis occur
at ribosomes
how can ribosomes be inhibited
by certain antibiotics
what are inclusions
reserve deposits in prokaryotic and eukaryotic cells
what are endospores
resting places for some bacteria
what is the shape of flagella and where are they found
they are few and long found in eukaryotic celsl
describe cilia
they are numerous and short
flagella and cilia are used for
motility
cilia move
substances along the surface of cells
what is the arrangement of flagella and cilia
nine pairs and two single microtubules
what does the cell walls of many algae and fungi contain
cellulose
what is the main material of fungal cell walls
chitin
what are animal cells surrounded by
glycocalyx
what does glcocalyx do
strengthen the cell and provide means of attachment to other cells
the eukaryotic plasma membrane is a
phospholipid bilayer containing proteins
how can eukaryotic cells move materials across the plasma membrane
by the passive processes used by prokaryotes and by active transport and endocytosis
the cytoplasm of eukaryotic cells includes
everything inside the plasma membrane external to the nucleus
the 80s ribosomes found in eukaryotic cells are attached to
rough endoplasmic reticulum
what is the most characteristic eukaryotic organelle
the nucleus which contains DNA in the form of chromosomes
what is the endoplasmic reticulum
what the nuclear envelope is connected to in the cytoplasm
the ER provides
surface of chemical reactions and serves as a transport network
what occurs on the rough ER
protein synthesis and transport
what is the function of the Golgi complex
to help with membrane formation and protein secretion
how are lysosomes formed
from Golgi complexes
what do lysosomes store
digestive enzymes
what is the primary site of ATP production
mitochondria
what does the mitrochondria contain
70S ribosomes and DNA
what do chloroplast contain
chlorophyll and enzymes for photosynthesis
what is the endosymbotic therory
the belief that eukaryotic cells evolved from symbiotic prokaryotes living inside other prokaryotic cells
this is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/57/50/90/2575090_m.jpg Diplococci
this is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/57/51/74/2575174_m.jpg coccobacillus bacteria
this is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/57/51/77/2575177_m.jpg diplobacilli bacteria
this is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/57/51/80/2575180_m.jpg sarcinae bacteria
This is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/59/01/68/2590168_m.jpg staphylococci bacteria
This is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/59/01/71/2590171_m.jpg single bacillus bacteria
This is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/59/01/77/2590177_m.jpg diplobacilli bacteria
This is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/59/01/83/2590183_m.jpg streptobacilli bacteria
This is an example of
//dp11i9uvzjqmt.cloudfront.net/2/images/upload-flashcards/59/01/86/2590186_m.jpg coccibacillus bacteria
cytoplasm refers to
the substance inside the cell
what are the major structures in the cytoplasm of prokaryotes
a nucleoid (containing DNA), ribosomes, and reserve deposits called inclusions
what does the cytoplasm of prokaryotic cells lack
cytoskeleton and cytoplasmic streaming
the nucleoid of a bacterial cell is attached to what
the plasma membrane
what is a plasmid and where is it located
plasmid is small circular double stranded DNA molecules. Located in the nucleoid
why are plasmids important
because they may carry genes for such activities as antibiotic resistance, tolerance to toxic metals, the production of toxins and the synthesis of enzymes
ribosomes are found in
both eukaryotic and prokaryotic cells
ribosomes function as
the site of protein synthesis
the letter S in ribosomes refers to
Svedberg units, which indicate the relative rate of sedimentation during ultra high speed centrifugation
what is an organelle
structures with specific shapes and specialized functions and are characteristic of eukaryotic cells
what does a organelle include
nucleus, endoplasmic reticulum, Golgi complex, lysosomes, vacuoles, mitochondria, chloroplasts, peroxisomes and centrosomes
what contains almost all of the cells hereditary info
nucleus
what is the nucleus surround by
a double membrane called the nuclear envelope
what do nuclear pores allow
the nucleus to communicate with the cytoplasm
what controls the movement of substances between the nucleus and cytoplasm
nuclear pores
what is nucleoli aka nucleolus
nucleoli are condensed regions of chromosomes where ribosomal RNA is being synthesized
what is an essential component of ribosomes
ribosomal RNA
the nucleus of eukaryotic cells contains what main protein
histones
chromatin is
threadlike mass of DNA
when do chromatin turn into chromosomes
during nuclear division
to segregate chromosomes prior to cell division what elaborate mechanisms are required in eukaryotic cells
mitosis and meiosis
what is in the cytoplasm of eukaryotic cells
endoplasmic reticulum or ER
what is the function of smooth ER
to sythesisize phosopholipids, fats and steroids
where is the first place that proteins go after they are synthesized?
Golgi complex
what does the Golgi complex consist of
3 to 20 cisternae. give Golgi cuplike shape
what is a transport vesicle
ribosomes of the rough ER that fuse with a portion of the ER membrane
how do the proteins move from one cistern to another
by transfer vesicles
when enzymes in the cisternae modify proteins, what do they form
glycoproteins, glycolipids and lipoproteins
how do proteins leave the cistern
by secretory vesicles or storage vesicles like (lysosomes)
what are lysosomes formed from
Golgi complexes
what do lysosomes contain
40 different kinds of powerful digestive enzymes
what is a vacuole
a space or cavity in the cytoplasm of a cell
what doe some vacuoles serve as
a temporary storage organelle for substances such as proteins, sugars, organic acids and inorganic ions
other vacuoles from endocytosis
help bring food into the cell
mitochondria
spherical or rod shaped organelle that appear throughout the cytoplasm of most eukaryotic cells
the mitochondria consist of
a double membrane, cristae (inner, series of folds), matrix (center of mitochondria
chloroplasts
membrane enclosed structure that contains both the pigment chlorophyll and enzymes required for light-gathering phases of photosynthesis
where is the chlorophyll in chloroplasts contained
in thylakoids(flattened membrane sacs)
what do chloroplasts contain
70S ribosomes, DNA and enzymes
perioxisomes
similar to the structure of lysosomes, but smaller
what happens in peroxisome
AA and fatty acids are oxidized
what do the enzymes in peroxisomes do such as the enzyme catalase
oxidize toxic substance such as alcohol. Or decompose toxic compounds like carbon dioxide
what is the centrosome
located in the nucleus contains: pericentriolar area and centrioles
within the pericentriolar material is a pair of cylindrical structure called
centriole
what is the endosymbiotic theory
explains the origin of eukaryotes from prokaryotes. That larger bacterial cells lost their cells walls and engulfed smaller bacterial cells
biosynthetic-secretory pathway
The process used by eucaryotic cells to synthesize proteins and lipids, followed by secretion or delivery to organelles or the plasma membrane; involves the endoplasmic reticulum, Golgi apparatus, and secretory vesicles.
cilia
Threadlike appendages extending from the surface of someprotists that beat rhythmically to propel them; cilia are membrane-bound cylinders with a complex internal array of microtubules, usually 9+2 pattern.
cristae
infoldings of the inner mitochondrial membrane
cytoskeleton
A network of microfilaments, microtubules, intermediate filaments, and other components in the cytoplasm of eucaryotic cells that helps give them shape, functions during cell division, and helps move materials in the cytoplasm.
endocytosis
The process in which a cell takes up solutes or particles by enclosing them in vesicles pinched off from its plasma membrane
endoplasmic reticulum (ER)
A system of membranous tubules and flattened sacs (cisternae) in the cytoplasm of eucaryotic cells; rough endoplasmic reticulum (RER) bears ribosomes on its surface; smooth endoplasmic reticulum (SER) lacks ribosomes
Flagellum
A thin, threadlike appendage on many procaryotic and eucaryotic cells that is responsible for their motility.
Golgo apparatus
A membranous eucaryotic organelle composed of stacks of flattened sacs (cisternae), which is involved in packaging and modifying materials for secretion and many other processes.
Lysosome
A spherical membranous eucaryotic organelle that contains hydrolytic enzymes and is responsible for the intracellular digestion of substances.
Microfilaments
Protein filaments, about 4 to 7 nm in diameter, that are present in the cytoplasm of eucaryotic cells and play a role in cell structure and motion.
Mitochondrion
The eucaryotic organelle that is the site of cellular respiration; it provides most of a nonphotosynthetic cell's energy under aerobic conditions.
Nuclear envelope
The complex double-membrane structure forming the outer boundary of the nucleus.
Nucleolus
Anorganelle located within the nucleus and not bounded by a membrane; it is the location of fibosomal RNA synthesis and assembly of ribosomal subunits.
Nucleus
The eucaryotic organelle enclosed by a double-membrane envelope that contains the cell's chromosomes.
Organelle
A structure within or on a cell that performs specific functions and is related to the cell in a way similar to that of an organ to the body.
Phagocytosis
The endocytotic process in which a cell encloses large particles in a membrane-delimited phagocytic vacuole (phagosome) and engulfs them.
Thylakoid
A flattened sac in the chloroplast stroma that contains photosynthetic pigments and the proteins and other molecules that convert light energy into ATP
Optimum temperature between -5 and 15 C.
Psychrophile
Optimum temperature between 20-30 C.
Psychrotroph
Optimum temperature between 25-45 C.
Mesophile
Optimum temperature between 45-70 C.
Thermophile
Optimum temperature of 70 C or greater.
Hyperthermophile
Requires O2
Obligate Aerobe
Cannot multiply in the presence of O2
Obligate Anaerobe
Grows best if O2 is present but can grow without it.
Facultative Anaerobe
Requires small amounts of O2 but higher concentrations are inhibitory.
Microaeophile
Indifferent to O2
Aerotolerant Anaerobe (Obligate Fermenter)
Multiplies at range of pH 5-8
Neutrophile
Multiplies at pH below 5.5
Acidophile
Multiplies at pH above 8.5
Alkalophile
Can grow in relatively high salt concentrations up to 10% NaCl
Halotolerant
Requires high levels of sodium chloride
Halophile
Bacteria can be maintained in a state of continuous exponential growth using a ____.
Chemostat
Temperature at which an organism multiplies most rapidly
Optimum growth temperature
Usually found in environments such as the Arctic and Antarctic regions and in lakes fed by glaciers
Psychrophiles
These are an important cause of food spoilage
Psychotrophs
These include disease causing bacteria
Mesophiles
Commonly occur in hot springs, water heaters and compost heaps
Thermophiles
These are usually Archae. Some have been found in deap sea hydrothermal vents
Hyperthermophiles
The O2 requirements of some organisms can be determined by making a ____.
Shake Tube
Micrococcus species are ___.
Obligate Aerobes
Include Clostridium botulinum and members of the Genus Bacteroides (major inhabitants of the large intestines).
Obligate Anaerobes
E. coli is a ____.
Facultative Anaerobe
Helicobacter pylori is a ____.
Microaerophile
Streptococcus pyogenes is a ____.
Aerotolerant Anaerobe
Superoxide
O2-
Hydrogen Peroxide
H2O2
Superoxide Dismutase degrades ____ to produce ____.
Superoxide, Hydrogen Peroxide
Catalase breaks down ____ to ____ and ____.
Hydrogen peroxide to O2 and H2O.
When the cytoplasm dehydrates and shrinks from the cell wall, this is called ____.
Plasmolysis
The major elements include
Hydrogen, Oxygen, Carbon, Nitrogen, Sulfur, Magnesium, Phosphorus, Potassium, Calcium, Iron,
Prokaryotes that use organic carbon (such as glucose) are called ____.
Heterotrophs
Prokaryotes that use inorganic carbon (CO2) are called ____.
Autotrophs
____ can convert inorganic carbon to organic carbon (carbon fixation).
Autotrophs
Some prokaryotes can perform nitrogen fixation, where ____ is converted to ____.
N2, ammonia
____ and ____ are limiting nutrients.
Phosphorus and Iron
Trace Elements include:
Manganese, Molybdenum, Cobalt, Zinc, and Copper.
Bacteria that require many growth factors are called ____.
Fastidious
Low molecular weight compounds that are required by a particular bacterium are called ____.
Growth Factors
Organisms that harvest the energy of the sunlight
Phototrophs
Organisms that obtain energy by oxidizing chemical compounds
Chemotrophs
Use the energy of the sunlight and CO2 in the atmosphere to make organic compounds.
Photoautotrophs
Photoautotrophs are also called ____.
Primary Producers
Cyanobacteria are ____.
Photoautotrophs
These use CO2 as their carbon source and inorganic compounds for energy. They often live in inhospitable climates.
Chemolithotrophs/Chemoautotrophs
Use the energy of the sunlight to derive their carbon from organic compounds
Photoheterotrophs
Use organic compounds for energy and as a carbon source.
Chemoheterotroph/Chemoorganoheterotroph
Mixture of short peptides and amino acids, made from digesting protein. Common ingredient of medium.
Peptone
Nutrient Broth consists of ____ and ____.
Peptone and Beef Extract
Media that contains red blood cells.
Blood Agar
Contains lysed red blood cells and other ingredients
Chocolate Agar
Composed of precise amounts of pure chemicals
Chemically Defined Media
Inhibit the growth of organisms other than the one which is being sought.
Selective Media
____ is used to isolate Neisseria gonorrhoeae.
Thayer-martin Agar
____ is used to isolate Gram-Negative Rods from clinical specimens such as urine.
MacConkey Agar
Contain a substance that certain bacteria change in a recognizable way.
Differential Media
Provide conditions in a broth that preferentially enhance the growth of one particular species in a cuture. Useful for isolating a specimen that is outnumbered greatly by another in the mixture
Enrichment Culure
The number of cells in a measured volume of liquid is counted using special glass slides.
Direct Microscopic Count
Electronic Instrument that counts cells in a suspension as they pass single file through a minute aperture.
Coulter Counter
Measures the scattering of light cells as they pass by a laser. Can be used to count either total cells or a specific popluation.
Flow Cytometer
Used to quantify the number of cells capable of multiplying.
Viable Cell Counts
Measure the number of viable cells in a sample by exploiting the fact that on an agar plate, one cell gives rise to one colony
Plate Count
A dilution is poured into a petri dish, spread, and then swirled. When the agar hardens, the individual cells are fixed in place, and the colonies can be counted.
Pour Plate Method
A dilute sample is spread over a plate and incubated.
Spread Plate Method
Method used when the number of organisms in a sample is relatively low, such as in pond water.
Membrane Filtration
Method of determining cells based on serial dilutions
MPN (Most Probable Number) Method
A ____ is used to measure turbidity.
Spectrophotometer
Cloudiness
Turbidity
Caused by the scattering of light passing through cells in a sample.
Turbidity
The equation used to calculate the total number of cells which will grow in a given amount of time is:
Nt=N0 x 2^n, where n is the number of divisions, N0 is the original number of cells and Nt is the total number of cells produced in that time.
Increase of number of cells in a population
Microbial Growth
The Generation time is:
The amount of time it takes for the number of cells to double.
Prokaryote comes from the Greek words meaning...
Prenucleus
Eukaryote comes from the Greek words meaning...
True nucleus
Name some distinguishing traits for prokaryotes.
There are 6 main ones listed in the chapter: One circular chromosome, not in a membrane, no histones, no organelles, peptidoglycan cell walls if bacteria, pseudomurein cell walls if Archaea, and binary fission
Name some distinguishing traits for eukaryotes.
There are 5 listed in the chapter, they are: paired chromosomes in nuclear membrane, histones, organelles, polysaccharide cell walls, and a mitotic spindle.
What is the main feature that distinguishes prokaryotes from eukaryotes?
The nucleus.
What are the three basic types of bacteria?
Baccillus (rod-shaped), Coccus (spherical), and Spiral (spirillum, vibro, spirochete).
What are the arrangements of bacteria?
Pairs: Diplo- Ex. Diplococci
Clusters: Staph- Ex. Staphylococci
Chains: Strept- Ex. Streptococci
How would you identify streptococci under a microscope?
They would be circular shaped bacteria in a chain.
Describe the structure and function of glycocalyx.
An outside cell wall, usually sticky. If referred to as a capsule it is neatly organized. If referred to as a slime layer it is unorganized and loose.
What is EPS?
Extracellular polysaccharide, a substance that allows a cell to attach to environment.
What do capsules prevent?
Phagocytosis.
What is a flagella?
A flagella is a long tail like structure made up of chains of flagellin, attached to a protein hook, anchored to the wall and membrane by the basal body, and can be in different positions.
How do cells with flagella move?
Rotate the flagella to run, swim or tumble. Also can swarm if there are many flagella. They move toward or away stimuli called taxis which can be phototaxis or chemotaxis.
What are axial filaments?
Also called endoflagella, are in spirochetes, anchored at one end of a cell, are structurally similar to flagellum, and rotate to cause cell movement.
What are fimbriae?
The are hair like appendages, allow attachment, adherence and biofilm.
What are pili?
They facilitate transfer of DNA from one cell to another, have gliding and twitching motility, and number one or two per cell.
Why are bacterial capsules medically important?
They are usually more chemically resistant and therefore can be harder to kill using antibiotics.
How do bacteria move?
They move using flagella, fimbriae, and pili.
What is the cell wall made up of in bacteria?
Peptidoglycan.
What is peptidoglycan?
A polymer of disaccharide: N-acetylglucosamine (NAG) and N-acetylmuramic acid (NAM).
What are some details about a gram positive bacteria's cell wall?
Thick peptidoglycan, teichoic acids, may regulate movement of cations, polysaccharides provide antigenic variation, 2-ring basal body, disrupted by lysozme, and is penicillin sensitive.
What are some details about a gram negative bacteria's cell wall?
Thin peptidoglycan, outer membrane, periplasmic space, 4-ring basal body, endotoxin, and tetracycline sensative
What are some details about acid-fast bacteria's cell walls?
They are like gram positive, waxy lipi (mycolic acid) is bound to peptidoglycan.
What are some details about mycoplasma's cell walls?
They lack cell walls! They have sterols in plasma membrane.
What are some details about archaea cell walls?
No cell walls, or walls of pseudomurein which lack NAM and D-amino acids.
What does lysozyme do to a cell wall?
Lysozyme digests disaccharide in peptidogylcan
What is a protoplast?
A wall-less cell.
What is a spheroplast?
A wall-less gram-positive cell.
What are protoplasts and spheroplasts susceptible to?
Osmotic lysis.
What are L forms?
Wall-less cells that swell into irregular shapes.
Why are drugs that target cell wall synthesis useful?
They are useful because animal cells do not contain cell walls and therefore won't be damaged by the cell-wall destroying drug.
Why are mycoplasmas resistant to antibiotics that interfere with cell wall synthesis?
They have no cell walls.
How do protoplasts differ from L forms?
L forms swell into irregular shapes while protoplasts just don't have a cell wall.
What is the structural components of the prokaryotic plasma membrane?
Phospholipid bilayer, peripheral proteins, integral proteins, transmembrane, and proteins.
What are the chemical components of the prokaryotic plasma membrane?
It is selectively permeable, there are enzymes for ATP production, and there are photosynthetic pigments on folding called chromatophores or thylakoids.
What are the functions of the prokaryotic plasma membrane?
Simple and facilitated diffusion, osmosis, active transportation and group translocation.
What is simple diffusion?
Movement of a solute from high concentration to low concentration.
What is facilitated diffusion?
When solute combines with a transporter protein in the membrane.
What is osmosis?
Osmosis if the movement of water across a selectively permeable membrane from an are of high concentration to an area of low concentration.
What is osmotic pressure?
The pressure needed to stop the movement of water across the membrane.
How does water move across membranes?
They move across either by going directly through the lipid layer or through an aquaporin.
What is active transport?
Movement across a membrane that required a transporter protein and ATP
What is group translocation?
Movement across a membrane that requites a transporter protein and PEP.
What agents can cause injury to the bacterial plasma membrane?
Antimicrobial agents called polymyxins cause leakage of intracellular contents and subsequent cell death, also alcohols and quaternary ammonium compounds are harmful to the bacterial plasma membrane.
What is cytoplasm?
The substance inside the plasma membrane.
What is the nucleoid?
The nucleoid is the bacterial chromosome.
The prokaryotic ribosome is.....
used for protein synthesis and is 70s (containing 50s and 30s subunits)
What are endospores?
They are resting cells, are resistant to desiccation, heat and chemicals. Bacillus and Clostridium are two genera with endospores
What are the functions of inclusions?
Metachromatic granules (volutin) = phosphate reserves.
Polysaccharide granules = energy reserves
Lipid inclusions = energy reserves.
What is sporulation?
Endospore formation.
What is germination?
A return to vegetative state.
Where is the DNA located in the eukaryotic cell?
The DNA is located in the nucleus.
What is the difference of prokaryotic and eukaryotic flagella?
A prokaryotic flagellum rotates, while a eukaryotic flagellum moves like a wave.
What is the eukaryotic glycocalyxe?
They are carbohydrates extending from animal plasma membrane, and are bonded to proteins and lipids in membranes.
What is the difference between prokaryotic and eukaryotic cell walls?
Eukaryotic cell walls do not contain peptidoglycan, Instead they contain cellulose, chitin, glucan, or mannan.
What is the difference between the eukaryotic and prokaryotic plasma membrane?
They are very similar except eukaryotic plasma membrane also contains sterols. Group translocation does not occur in eukaryotic cells. However, they can use endocytosis.
What is the difference between the prokaryotic and eukaryotic cytoplasm?
The major difference is that eukaryotic cytoplasm contains a complex internal structure, consisting of exceedingly small rods (microfilaments and intermediate filaments) and cylinders (microtubules). Together forming the cytoskeleton.
What is cytoplasmic streaming?
The movement of cytoplasm throughout cells.
What is the structure and function of the eukaryotic ribosome?
It is responsible for protein synthesis, it is 80s in membrane bound (attached to ER) and free in cytoplasm, it is 70s in chloroplasts and mitochondria.
The antibiotic erythromycin binds with the 50s portion of a ribosome. What effect does that have on a prokaryotic cell? What about a eukaryotic cell?
A prokaryotic cell would stop producing proteins completely whilst a eukaryotic cell's mitochondria or chlorloplasts would be the only thing effected.
Define organelle.
Organelles are structure with specific shapes and specialized functions and are characteristic of eukaryotic cells.
What is function of the nucleus?
The nucleus contains DNA in the form of chromosomes.
What is the Endoplasmic Reticulum?
It is the transport network of the cell.
What is the Golgi complex?
It functions as membrane formation and secretion.
What is the lysosome?
Lysosome contains digestive enzymes.
What is a vacuole?
A vacuole brings food into cells and provides support.
What is the mitochondrion responsible for?
Cellular respiration.
What does the chloroplast do?
Photosynthesis.
What does peroxisome do?
Oxidation of fatty acids, destroys H2O2
What is a centrosome?
Consists of protein fibers and centrioles.
What is the difference between the nucleus of a eukaryotic cell and the nucleoid of a prokaryotic cell?
The nucleus in membrane bound and contains chromosomes. The nucleoid is not membrane bound and floats freely.
How does the rough and smooth ER compare structurally?
Structurally, the rough and smooth ER are different in that the rough ER is studded with ribosomes and is continuous with the nuclear membrane. The smooth ER extends from the rough ER to form a network of membrane tubules.
How does the rough and smooth ER compare functionally?
Proteins are synthesized on the rough ER enter cisterns within the ER for processing and sorting. The smooth ER does not synthesize proteins but it does synthesize phospholipids, fats, and steroids such as estrogens and testosterone.
Which three organelles are not associated with the Golgi complex? What does this suggest about their orgin?
The nucleolus, mitochondria, and the centrioles are all not associated with the golgi complex. It is theorized in the endosymbiotic theory that these were ancient bacteria that were engulfed by another ancient cell.
Name the 4 shapes of Cell mophology?
Cocci:- Round or spheres
Bacillus:- Rods
Spirillum:- Spiral/wavy
Spirochele:- Corkscrew
The shape of cell morphology is maintained by what?
Peptidoglycan cell wall
Cell is covered by what?
Cell or plasma membrane
Cell wall
What is cell wall composed of?
Peptidoglycan
Outer membrane in some bacteria
Name the stuctures inside the cell covering?
Cytoplasm, Ribosomes, Nucleoid region, Plasmid, Mesosomes, Cesicle or inclusions.
What is the functions of ribosome?
IT is the site for protein synthesis.
What are the 70s ribosomes composed of?
30s and 50s subunits.
What does the "S" in "30s,50s,70s ribosomes" stand for?
The "S" stands for sedimentation coefficient or Svediberg Unit.
What is the functions of Nucleoid regions?
It is the area containing the bacteria chromosome.
What is bacteria chromosome?
IT is a circular DNA containing most genes for the bacteria structure and function.
What is Plasmid?
It is a small circular extrachromosomal DNA capable of independent replications & carries gene for resistance & or fertility.
What are the 2 types of Plasmid?
R-plasmid/ F-Plasmid
What is the funtions of R-plasmid?
It carries gene for resistance against chemicals & drugs.
What are the functions of F-plasmid?
It contain genes that enhance fertility & gen transfer in conjugation or suxductions. (passing information from one DNA to another.
What does F-Plasmid encode?
Pili:-a bridge used to transfer DNA from F+ to F-.
Macroelements
macronutrients required by microorganisms in relatively large amounts (95%) (C, H, O, N, S, P, K, Ca, Mg, Fe)
Trace elements
micronutrients are required in trace amounts by most cells (supplied in water) (Mn, Zn, Co, Mo, Ni, Cu)
Carbon Source: Autotrophs
Autotrophs use CO2 as their sole or principal carbon source
Carbon Source: Heterotrophs
Heterotrophs use reduced, preformed organic molecules (usually from other organisms) as carbon sources
Energy: Photo-trophs
Photo-trophs use light as their energy source.
Energy: Chemo-trophs
Chemo-trophs obtain energy from the oxidation of organic or inorganic compounds (Chemo-Organo-trophs or Chemo-Lithot-trophs)
Electrons: Litho-trophs
Litho-trophs use reduced inorganic compounds as their electron source
Electrons: Organo-trophs
Organo-trophs use reduced organic compounds as their electron source
All pathogenic bacteria are
Chemo organo trophic heterotrophs
Organisms that combine autotrophic and heterotrophic metabolic processes, from on inorganic energy sources and organic carbon sources
mixotrophic organisms
Nitrogen is needed for
- synthesis of amino acids, purines, pyrimidines and other molecules
How Nitrogen can be supply (3)?
1. by organic molecules 2. by assimilatory nitrate reduction 3. or by nitrogen fixation
Where Phosphorus is present ?
Phosphorus is present in nucleic acids, phospholipids, nucleotides and other molecules;
How microorganism meet their Phosphorus needs?
using inorganic phosphate
Where Sulfur is needed?
Sulfur is needed for the synthesis of certain amino acids and other molecules;
How microorganism meet their sulfur needs?
by assimilatory sulfate reduction
Explain Passive diffusion (3 ideas)
1.Molecules move from high_conc to low_conc 2. Large conc. gradient for signif. levels of uptake 3.Limited to only a small molecules (glycerol, H2O, O2, and CO2)
Facilitated diffusion
involves a carrier molecule (permease) to increase rate diffusion, facilitated by integral proteins, from high_conc to low_conc, but smaller gradient.
What limited the transport in Facilitated diffusion?
the number of carrier proteins-> Saturated Effect
Facilitated diffusion is important in: Eucaryotes cells or Procaryotes celss
Eucaryotes cells
Active transport
Metabolic energy is used to move molecules to cell interior against the concentration gradient. Observed in bacteria, archaea and eucaryotes.
Group translocation
A process in which molecules are modified (chemically altered) as they are transported across the membrane.
Example of Group translocation
phosphoenolpyruvate: sugar phosphotransferase system (PTS).
Why iron?
iron is useful in cytochromes and many enzymes
Iron uptake
the organism secretes Siderophores that complex with the very insoluble ferric ion (Fe3+), which is then transported into the cell
Fe3+, soluble or not?
It is Insoluble, so small amounts of iron are available. Bacteria and fungi handle this problem by the development of siderophores able to complex with ferric
Culture Media
Solid or liquid preparation used to grow, transport, and store microorganisms
Culture Media: Synthetic media
defined media in which all components and their concentrations are known
Culture Media: Complex media
media that contain some ingredients of unknown composition and/or concentration (amino acids, vitamins, growth factors, and other nutrients)
General purpose media
It will support the growth of many microorganisms
Enriched media
They are supplemented by blood or other special nutrients to encourage the growth of fastidious heterotrophs
Selective media
It favors the growth of particular microorganisms and inhibit the growth of others
Differential media
Distinguish between different groups of bacteria on the basis of their biological characteristics: Nutrient broth, Tryptic soy broth, Macconkey Agar.
collective name for chemical reactions occuring within a cell
metabolism
metabolic reaction that requires energy
anabolic reaction
metabolic reaction that is energy releasing
catabolic reaction
organisms that use organic compounds as their carbon and energy sources
chemoorganotrophs
organisms that obtain carbon and energy from co2
autotrophs
chemical tools needed to make monomers
nutrients
nutrients required in large amounts
macronutrients
nutrients required in small or trace amounts
micronutrients
the typical cell is about ___ % carbon
50%
the major element in all classes of macromolecules
carbon
next most abundant element in the cell after carbon
nitrogen
N2 (nitrogen gas) can only be a source for certain bacteria known as
nitrogen-fixing bacteria
ammonia and nitrate are examples of ____ sources which are in inorganic form
nitrogen
macronutrient required by cell primarily for synthesis of nucleic acids and phospholipids
phosphorus
macronutrient required by cell because of structural role in certain amino acids and present in a number of vitamins
sulfur
macronutrient that originates mostly from inorganic sources such as sulfate or sulfide
sulfur
macronutrient required by cell to make enzymes, some of which are involved in protein synthesis
potassium
macronutrient required by cell in order to stabilize ribosomes, cell membranes, and nucleic acids. also required for activity of many enzymes
magnesium
macronutrient that helps stabilize bacterial cell wall and plays a key role in heat stability of endospores
calcium
required by some but not all organisms. need often reflects habitat of organism
sodium
plays major role in cellular respiration, also a key component of the cytochromes and proteins involved in electron transport
iron
iron-binding agents that solubilize iron and transport it into the cell
siderophores
structurally complex phenolic siderophores
enterobactins
without ___, pathogens would be unable to initiate an infection due to iron limitations
siderophores and enterobactins (iron binding agents)
organic compounds that are required in very small amounts and only by some cells
growth factors
includes vitamins, amino acids, purines, and pyrimidines; most microorganisms are able to synthesize all of these compounds, but some require them preformed from environment
growth factors
most commonly needed growth factors; most funtion as coenzymes
vitamins
nutrient solutions used to grow microorganisms in the laboratory
culture media
culture media where exact contents are known
defined media
culture media where exact contents are unknown (rotting meat/yeast could be used)
undefined (complex media)
a culture containing only a single kind of microorganism
pure culture
unwanted organisms within a culture
contaminants
the ability to do work; measured in units of kilojoules (kJ)
energy
energy released that is available to do useful work
free energy
pH 7, 25 degrees C, all reactants and products @ 1 M initial concentration
standard conditions
when G is negative, reaction proceeds w/ ___ of free energy; such reactions are ___
release; exergonic
when G is positive, the reaction ____ energy; such reactions are ____
require; endergonic
amount of energy required to bring all molecules in a chemical reaction to the reactive state
activation energy
substance that lowers activation energy
catalyst
catalysts of biological reactions are proteins called
enzymes
in an enzyme-catalyzed reaction, the enzyme temporarily combines w/ the reactant which is termed a ___; this forms a _______
substrate; enzyme-substrate complex
the enzyme is generally much ____ than the substrate
larger
small portion of enzyme to which substrates bind
active site
Active Transport
The transport of solute molecules across a membrane against an electrochemical gradient; it requires a carrier protein and the input of energy (ATP)
Agar
A complex sulfated polysaccharide, usually from red algae, that is used as a solidifying agent in the preparation of a culture media
Antiport
Linked transport in which the transported substances move in oppostie directions
Growth Factors
Organic compounds that must be supplied in the diet for growth because they are essential cell components or precursors of such components and can't be synthesized
Autotrophs
An organism that uses CO2 as its sole or principal source of carbon
Heterotrophs
An organism that uses reduced, preformed organic molecules as its principal carbon
Chemolithotrophic Autotrophs (Chemolithoautotrophs)
Microorganisms that oxidized reduced inorganic compounds to derive both energy and electrons; CO2 is their carbon source
Chemoorganotrophic heterotrophs (Chemoheterotrophs)
Organisms that use organic compounds as sources of energy, hydrogen, electrons, and carbon for biosynthesis
Chemotrophs
Organisms that obtain energy from the oxidation of chemical compounds
Colony
An assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium; the assmeblage often is directly visible, but also may be seen only microscopically
Complex Medium
Culture medium that contains some ingredients of unknown chemical composition
Defined Medium (Synthetic Medium)
Culture medium made with components of known composition
Differential Media
Culture media that distinguish between groups of microorganims based on differences in their growth and metabolic products
Facilitated Diffusion
Diffusion across the plasma membrane that is aided by a carrier
Group Translocation
A transport process in which a molecule is moved across a membrane by carrier proteins while being chemically altered at the same time
Lithotroph
An organism that uses reduced inorganic compounds as its electron source
Macroelements
Nutrients required by microorganisms in relatively large amounts (C, O, H, N, S, and P)
Micronutrients
Nutrients such as zinc, manganese, and copper that are required in very small quantities for growth and reproduction (AKA: Trace Elements)
Mixotrophic
Refers to microorganisms that combine autotrophic and heterotrophic metabolic processes (they use inorganic electron sources and organic carbon sources)
Nutrient
A substance that supports growth and reproduction
Organotrophs
Organisms that use reduced organic compounds as their electron source
Passive Diffusion
The prosses in which molecules move from a region of higher concentration to one of lower concentration as a result of random thermal agitation
Peptones
Water-soluble digests or hydrolysates of proteins that are used in the preparation of culture media
Permease
A membrane-bound carrier protein or a system of two or more proteins that transport a substance across the membrane
Pour Plate
A petri dish of solid culture medium with isolated microbial colonies growing both on its surface and within the medium
Phophoenolpyruvate: Sugar Phosphotransferase system (PTS)
The best-known group translocation system; it transports a variety of sugars into procaryotic cells while phosphorylating them using PEP as the phosphate donor
Pure Culture
A population of cells that are idenitical because they arise from a single cell
Photolithotrophic Autotrophs (Photoautotrophs)
Organisms that uses light energy, an inorganic electron source (eg. H2O, H2, H2S), and CO2 as a carbon source
Photoorganotrophic Hetertrophs
Microorganisms that use light energy and organic electron donors, and also employ simple organic molecules rather than CO2 as their carbon source
Phototrophs
Organisms that use light as their energy source
Selective Media
Culture media that favor the growth of specific microorganisms; this may be accomplished by inhibiting the growth of undesired microorganisms
Siderophores
A small molecule that complexes with ferric iron and supplies it to a cell by aiding in its transport across the plasma membrane
Symport
Linked transport of two substances in which they both go in the same direction
Vitamin
An organic compound required by organisms in minute quantities for growth and reproduction becasue it cannot be synthesized by the organism; vitamins often serve as enzyme cofactors or parts of cofactors
Lag phase
(apparent inactivity) the population remains at the same number. Metabolic activity is taking place, synthesizing new cell components. Length depends of conditions.
Log phase
(Exponential) bacterial growth occurs at its optimal level (maximal rate possible) and population doubles rapidly. Population is most uniform in terms of chemical and physical properties.
Stationary phase
Number of viable microorganisms remains constant, the reproduction of bacterial cells is offset by their death, – and the population reaches a plateau.
Death phase
the bacteria die off rapidly (exponential rate)
Mean growth rate constant
K: number of generations per unit time, often expressed as generations per hour
Starvation proteins are produced by a culture during which phase of the growth curve?
Stationary phase
aerotolerant anaerobe
uses oxygen when present or grows without oxygen when absent. Psychrotrophs (facultative psychrophiles)
System that is used to grow bacterial cultures continuously
Chemostat
They can grow well at 0°C, have optimal growth at 15°C or lower, and usually will not grow above 20°C
Psychrophiles
They can also grow at 0°C, but have growth optima between 20°C and 30°C, and growth maxima at about 35°C
Psychrotrophs (facultative psychrophiles)
They have growth optima of 20 to 45°C, minima of 15 to 20°C, and maxima of about 45°C or lower
Mesophiles
They have growth optima of 55 to 65°C, and minima around 45°C
Thermophiles
They have growth optima of 80 to 110°C and minima around 55°C
Hyperthermophiles
An organism able to grow in the presence of O2 is an
aerobe
An organism that cannot able to grow in the presence of O2 is an
anaerobe
An organism that ignore O2 and grow equally well whether it is present or not
Aerotolerant anaerobes
Microaerophiles
An organism that require lower levels (2 to 10%) for growth because normal atmospheric levels of O2 (20%) are damaging to the cell
Biogeochemical cycles
Pathway by which a chemical element or molecule moves through: –biotic(biosphere) – abiotic (lithosphere, atmosphere, and hydrosphere)
Reservoirs
Place where the element is accumulated or held for a long period of time (such as an ocean or lake for water)
cyanobacteria
A large group of bacteria that carry out oxygenic photosynthesis using a system like that present in photosynthetic eucaryotes. (See 471)
the transformations of a substrate, and the products of one group of microorganisms can be used by a second type of microorganism
commensalism
commensalism
A type of symbiosis in which one individual gains from the association and the other is neither harmed nor benefited
mineralization
The release of inorganic nutrients from organic matter during microbial growth and metabolism.
Nitrogen fixation
series of sequential reduction steps to convert gaseous nitrogen to ammonia. Needs energy. by aerobes or anaerobes. must be done anaerobically, even by aerobic microorganisms.
Water borne diseases:
pathogens originate in fecal material are transmitted by Ingestion
Water related diseases:
MO with life cycles associated with insects that live in water, by Insects
Water based:
originate in water/spend some life in water and come into direct contact with human by Inhalation
Water washed diseases:
originated in feces and transmitted because of inadequate sanitation or hygiene, by Contact
Antigen
foreign molecule, when introduced into the body, triggers the production of an antibody by the immune system. Immune system will kill or neutralize the antigen as potentially harmful invader.