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31 Cards in this Set

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Microbe

A very tiny organism, includes species of bacteria, Archaea, and some eukaryotes

What does micro- mean?

Bacterial niches

Decomposers, nitrogen-fixation, nitrification/denitrification, digestion, prevent bad bacteria from settling, etc.

Bushman's fish tank, the soil, dead organisms

5 kingdom system

Animalia, Plantae, Fungi, Protista, Monera

A,P,F,P,M (couldn't come up with a good mnemonic...)

Cell walls (BAE)

Bacteria: peptidoglycan (murein), Archaea: pseudomurein, Eukarya: cellulose

What do plants have?

Cell membranes

Bacteria: phospholipids, Archaea: glycerol & isoprenoid chains, Eukarya: phospholipids

Hydrophilic heads, hydrophobic tails.

rRNA

Bacteria, Archaea, and Eukarya do not all have the same rRNA sequences

Are Bacteria, Archaea, and Eukarya very similar?

Histones

Prevent transcription by having DNA wrap around it. Bacteria: no histones, Archaea: similar structure, Eukarya: histones present

Epigenetics

Habitat

Bacteria: everywhere, Archaea: extreme environments, Eukarya: everywhere

Where do you see the BAE?

Introns

Non-coding portions of the DNA. Bacteria: No introns, Archaea: Some have introns, Eukarya: introns present

Can bacteria use eukaryotic DNA?

Methanogens

Use CO2 as energy and methane as waste (chemiautotrophs), anaerobic, found in termites' digestive tract, Siberian tundra, and human & dog intestines

Methan - o - gen

Thermophiles

REALLY LIKE THE HEAT, found in sulfur hot springs (pH 1-5, temp. 90 degrees C), also found in deep ocean vents (temp. 105 degrees C)

Thermo - phile

Halophiles

LOVE SALT, live in Dead Sea, Great Salt Lake, and evaporative salt ponds, usually salinity is 10x higher than worlds' oceans

Halo (salt) - phile

Bacteria shapes

Sphere a.k.a. cocci (alone, pairs, chains, clusters, gram positive), Rod a.k.a. bacilli (alone, chains, gram negative), Helices a.k.a. spirilla (forever alone :3, gram negative)

O, -, ~

Cell Walls (gram positive vs gram negative)

Gram positive: simple, stain purple, large, in outer layer, no membrane; gram negative: complex, stain pink, small, covered by outer layer of membrane

Cocci examples

Staphylococcus and Streptococcus

End in coccus

Bacilli examples

Salmonella

Spirilla examples

Streptobacillus monoliformis and Spirillum minus

Bacterial communication

Quorum sensing, vibrio fischeri density molecule for light, found in firefly squid, includes Streptococcus quorum and Staphylococcus sps.

Virus features

Not alive, can reproduce and evolve by natural selection, surrounded by capsid, DNA or RNA, single or double stranded, retroviruses use RNA with reverse transcriptase, some have phospholipid bilayer viral envelope

Yeast

Genus saccharomyces, kingdom fungi, used for alcoholic fermentation, nonmotile, chitin cell walls, extracellular digestion,

Like mushrooms, make bread rise, moving yeast?

Yeast Reproduction

Budding or fission, sexually (a and alpha) under stress

Remember the picture

Amoeba

Locomotion by pseudopodia, intracellular digestion, use contractile vacuoles for osmoregulation, Naegleria fowleri (brain eaters)

"Fake feet,"

Amoeba reproduction

Binary fission (bacteria do it too)

Like early atomic bombs

Plasmodium

Intracellular digestion, 200 different species, found in mosquitos causes malaria, move by gliding on substrate, sporozoites --> gametocytes, pesticides and preventing standing water stop mosquito reproduction

Think disease (malaria)

Paramecium

Intracellular digestion, move by cilia, take food in by mouth, primarily freshwater, endosymbiosis with bacteria and viruses

Om nom nom

Euglena

Autotrophic and heterotrophic, has chloroplast and gathers food, flagella, no cell wall, kingdom protista

Hybrid

Chlorella

Single green-celled algae, chlorophyll a and b in chloroplast, used to describe Calvin cycle, planktonic (cannot swim), cell wall cellulose, kingdom protista, make lipids and release them to be less dense and float, photic zone

Chlor-

Types of nitrogen fixation

Mutualistic nitrogen fixation (Rhizobium sps and legumes), Free-living nitrogen fixation (Azotobacter sps), Industrial nitrogen fixation (burn fossil fuels to produce fertilizer)

Nitrification and Denitrification

Nitrification: oxygen added to ammonia and nitrates are produced, Nitrosomonas, Nitrobacter turn nitrite into nitrate


Denitrification: Remove nitrites and nitrates and put N2 gas into air, Pseudodomonas denitrificans

It's in the middle of the cycle and the end

Conditions for Nitrification and Denitrification

Nitrification: Aerobic, Neutral pH, Warm


Denitrification: Anaerobic, Abundant nitrate or nitrite

Sewage and microbes

Excessive rain or mechanical failure, sewage released into bodies of water, bacteria