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73 Cards in this Set

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What do the electron carries do in the ETS?

They sequentially transfer electrons to the carrier of the nest higher reduction potential ( or the next stronger electron acceptor

Electron flow through the ETS begins with ________ and ultimately _________

an initial electron donor from outside the cell and ultimately transfers all electrons to terminal electron acceptor that leaves the cell

What is embedded in a membrane that separates two compartments?

The ETS

What two compartments does the ETS separate and why?

Two aqueous compartments and to maintain an ion gradient generated by the ETS

The ETS is composed of ?

protein complexes and cofactors

Protein complexes called oxidoreductases include

cytochromes and noncytochrome proteins

What are cytochromes?

colored proteins whose absorbance spectrum shifts when there is a change in redox state

The ETS complexes generate

a proton motive force

What does the proton motive force do?

it is directed inward and drives protons into the cell

What does the proton potential drive?

ATP synthesis, ion transport and flagellar rotation.

What do electron carriers contain for electron transfers?

metal ions and or conjugated double bonded ring structures

Where does a substrate dehydrogenase receive a pair of electrons?

from a particular reduced substrate like NADH, NADH dehydrogenase

How are protons pumped?

By substrate dehydrogenase and terminal oxidase.

substrate dehydrogenases or

oxidoreductases

How are protons consumed?

by combining with the terminal electron acceptor like combining with oxygen to make water

What determines the number of protons pumped by a bacterial ETS?

environmental conditions like the concentration of the substrate and terminal electron acceptor

The proton potential drives ATP synthesis through

membrane bound ATP synthase

How many protons drive each cycle of ATP synthesis and what is synthesized

three protons needed to make one molecule of ATP

Anaerobic terminal electron acceptors

accept electrons from a specific reductase complex of ATP

What are some anaerobic terminal electron acceptors?

Nitrogen and sulfur oxyanions, oxidized metal cations, and oxidized organic substrates

How is nitrate reduced by bacteria?

Nitrate, nitrite, nitric oxide, nitrous oxide and ultimately nitrogen gas.

Nitrate and nitrite could be reduced to

ammonium ion- a product that alkalinizes the environment

Sulfate is successivley reduced by bacteria to

sulfite, thioslfate, elemental sulfur, and hydrogen sulfide.

Where are sulfate reducers especially prevalent

seawater

Dissimilatory metal reduction

a form of anaerobic respiration where oxidized metal ions are reduced by bacteria in soil and aquatic habitats

Name some oxidized metal ions

Fe 3+ and Mn 4+

The geochemistry of natural environments is largely shaped by

anaerobic bacteria and archaea

The acquisition of energy by oxidation of inorganic electron donors

Lithotrophy or chemolithotrophy

6 things included in lithotrophy

sulfur oxidation


iron oxidation


nitrogen oxidation


hydrogenotrophy


methanogenesis


methane oxidizers

sulfuric acid production leads to

extreme acidification, damaging stone structures and poisoning mine drainage

sulfur oxidation includes

oxidation of H2S to sulfur or to sulfuric acid by sulfur-oxidizing bacteria.

What usually accompanies sulfur oxidation and in what form

Iron oxidation ( rust)

Nitrogen oxidation includes

successive oxidation of ammonia to hydroxlamine, nitrous acid and nitric acid.

What uses hydrogen gas as an electron donor

Hydrogenotrophy

Hydrogen has sufficient

reducing potential to donate electrons to nearly all biological electron acceptors including chlorinated organic molecules (through dehalorespiration)

occurs by oxidation of H2 by carbon dioxide to form methane

Methanogenesis

Methanogenesis is performed only by

the methanogen groups of archaea

Methane oxidizers use O2, nitratem or sulfate to

oxidize the methane produced by methanotrophs

The metabolic ability to absorb and covert solar energy into chemical energy for biosynthesis

Photosynthesis

5 things of photosynthesis

Bacteriorhodopsin


The antenna complex


Thylakoids


The oxygenic Z pathway in cyanobacteria and chloroplast


oxygenic photosynthesis generates 3 atp and 2 nadph

a light-driven proton pump that supplements hetertrophy in haloarchaea

bacteriorhodopsin

What is found in marine proteobacteria

proteorhodopsin

What captures light for transfer to the reaction center in cholorphyll-based photosynethsis

The antenna complex of chlorophylls and other photopigments

folded membranes within phototrophic bacteria or chloroplasts

Thylakoids



Thylakoid membranes extend

area for chlorophyll light absorption and they separate two compartments to form a proton gradient

This includes homologs of photosystems I and II.

The oxygenic Z pathway in cyanobacteria and chloroplasts

What happens in the Oxygenic Z pathway in cyanobacteria and chloroplast

Eight photons are absorbed and two electron pairs are removed from 2 H2O ultimately producing O2

Oxygenic photosynthesis generates

3 atp and 2 nadph per 2 H2O photolyzed and O2 produced

What is used to fix carbon dioxide into biomass

ATP and NADPH

Electrochemical potential or voltage across a membrane may be used to

power ATP synthesis, nutrient uptake, or motility

ETS redox reactions

the transfer of electrons from a reduced electron donor to an oxidized electron acceptor




Energy is converted to an ion or voltage potential across the memebrane

Where does ETS occur in prokaryotes

at the cytoplasmic membrane

Where does ETS occur in eukaryotes

the inner mitochondrial membrane

ETS ultimately pumps

protons out of the cell generating the proton motive force


Respiratory ETS and ATP synthesis

An ETS much be able to harvest energy in small steps such as pmping protons across the membrane

Anaerobic respiration

makes it so that bacteria and archaea can exist in a place where there isn't oxygen

anaerobic respiration terminal electron acceptors

nitrogen and sulfate

What plays a role in recycling the elements in the biosphere

Chemolithotrophy

Chemolithotrophy is a form of

energy yielding metabolism whereby reduced minerals can serve as electron donors for ETS

The Anaerobic oxidation of ammonium to nitrogen gas

does yield energy for growth and plays an important role in cycling nitrogen back into the atmosphere

a form of hydrogenotrophy in which chlorine is removed from a compound and replaced by a hydrogen

Dehalorespiration

What is commonly used to supplement traditional commercial mining endeavors

microbial leeching by oxidixing minerals and dissolving the metals from rocks.

Where does methanogenesis is commonly found?

landfills and the digestive systems of cows and humans

Lithotrophy corresponds to energy derived from

compounds not containing any carbon

ogranotrophy derives energy from

breakdown of compounds with at least one carbon-carbon bond

ancient form of phototrophy

bacteriorhodopsin

Three things of bacteriorhodopsin

relies on a single-protein light driven proton pump


commonly found in haloarchaea


absorbs light in the green range and reflects it in the red and blue ranges appearing purple.

Two forms of phototrophy

bacteriorhodopsin and proteorhodopsin

a bacterial membrane protein that contains retinal and acts as a light-driven proton pump

proteorhodopsin

light-absorbing pigments which have a light-absorbing electron carrier referred to as a chromophore.

Chlorophylls

Where are chlorophylls found?

Bacteria and plants

Chlorophylls of anaerobic phototrophs absorb

in the infrared range and appear a deep purple or brown

An organism that uses all the metabolic options- heterotrophy, lithotrophy and photosynthesis is referred to as

asfacultative phototrophy