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430 Cards in this Set

  • Front
  • Back

Microbiology

The study of Microbes

Microbes

organisms so small that a microscope is needed to study them

Cells

the basic unit of structure and function in living things

Viruses

a submicroscopic , parasitic, acellular organism composed of nucleic acid (DNA or RNA) core inside a protein coat

Bacteria

single-celled organisms with a spherical, rod, or spiral shapes but a few form filiment althought cellular, they HAVE NO NUCLEUS and they lack a membrane enclosed structure.

cellular

can live alone

acellular

not consisting of , diving into or containing cells

prokaryotic

don't have a nucleus

eukaryotic

have a nucleus

Archaea

are prokaryotic and cellular

Bacteria

are prokaryotic and cellular

Algae

eukaryotic and cellular

Fungi

are eukaryotic and cellular

Protozoa

eukaryotic and cellular

Various species are involved in fermentation, putrefication, infectious disease or nitrogen fixation

bacteria

Algea

any of a numerous group of chlorophill containing, mainly aquatic, eukaryotic organisms ranging from microscopic single celled forms to multicellular forms.

these are distinguished from plants by the abcence os the true roots, stems, leaves and lack of non reproductive cells in the reproductive structure

algea

Fungi

a diverse group of eukaryotic single celled organisms that live by decomposing and obsorbing organic materials in which they grow, comprising the mushroom, molds, mildews, smuts, rusts and yeast

Robert Hooke

reported that living things were composed of little boxes or cells

Leeuwenhoek

1st to see living organisms through a microscope

Spontaneous generation

the hypothesis that living organisms arise from nonliving matter; a vital force forms life



Biogenesis

the hypothesis that the living organism arise from preexisting life

Pasteur

The father of microbiology, developed techniques to weaken an organism so they will product immunity without producing disease

Pasteurization

The application of a high heat for a short time

cell theory

that cells are the fundamental units of life and carry out all the basic functions of living things




This still applies today to all cellular organisms except bacteria

Koch's Postulate

provided a method of establishing the germ theory of disease


1) the specific causative agent must be found in every case of the disease


2) The disease organism must be isolated in pure culture


3) Inoculation of a sample if the culture into a healthy, susceptable animal must produce the same disease


4) The disease organism must be recovered from the innoculated animal.

Liser

proved and created the 1st aseptic techniques in order to prevent the spread of infection

Chemotherapy

treatment with chemicals

Cheotherapeutic agents used to treat infectious disease can be _______________ or ___________

synthetic agents , antibiotics

antibiotics

chemicals produced by bacteria and fungi that inhibit or kill other microbes

antibodies

molecules the body immune system produces to combat invading microbes and their toxic products.

bacteriophages

(also called a phage) the future of microbiology. The viruses that attack and kill specific kinds of bacteria

Jenner

used fluid from cowpox blisters to immunize against "smallpox", thus creating the 1st immunization

Human genome project

microbial genetic techniques have made possible a colossal scientific undertaking to identify the location and chemical sequence of all the genes in the human genome

Bacteriophage Therapy

is the therapeutic use of bacteriophages to treat pathogenic bacterial infections

Genomics

is a discipline in genetics that applies recombinant DNA, DNA sequencing methods, and bioinformatics to sequence, assemble, and analyze the function and structure of genomes (the complete set of DNA within a single cell of an organism).

viroid

an infectious RNA partical smaller than a virus and lacking a capsid, that causes various plant diseases

Prion

an exceedingly small infectious particle of protein without any nucleic acid

domain

a new taxonomic category above the kingdom level , consisting of the Archaea, bacteria and eukarya

microbe

organisms studies with a microscope , including viruses

Chemistry

the study of interactions between atoms and molecules

Atom

the smallest unit of matter that enters into a chemical reaction


when two or more atoms combine chemically, they form ____________

molecules


Molecules made up of atoms of 2 or more elements are called _________________

compounds

Subatomic particles

protons, neutrons and electrons

electrons have a _________ charge

negative

protons have a _________ charge

positive

neutrons have a ________ charge

neutral

atoms normally have _____________ number of electrons and protons

equal

atoms are normally considered to be electrically ___________

neutral

The protons and neutrons can be found in the _______________

nucleus

matter composed of one kind of atom is called an ____________

element

The atoms of a particular element always have the same # of protons and that # of protons is also the ____________

atomic number

Electrons with the ____________ amount of energy are found nearest the nucleus

least

Rule of the octets

a chemical rule of thumb that reflects observation that atoms of main-group elements tend to combine in such a way that each atom has eight electrons in its valence shell, giving it the same electronic configuration as a noble gas.

ion

a charged atom produced when an atom gains or loses one or more elctrons

anion

a negatively charged ion ~ an atom that gains an electron to fill its outer shell

cation

a positively charged ion ~ when an atom loses one if its electrons in the outer shell without also losing a proton

when an outer shell is full it is said to be more ______________

stable

The sum of the # of protons and neutrons in an atom is the ________

atomic #

Isotope

Atoms of a particular element that contain a different # of neutrons.

a __________ or _________ is the weight of a substance in grams equal to the sum of the atomic weight of the atoms in a molecule of the substance.

a gram molecular weight , mole

__________ form between atoms through the interactions of electrons in their outer shell. Energy associated with these bonding electrons hold the atoms together, forming molecules

chemical bonds

Ionic bonds

result from the attraction between the ions that have opposite charges. This type of bond occurs when there is complete transfer (between the two atoms) of the electrons in the bond. (+) + (-) = ionic bond




The rule is that when the electronegativity difference is greater than 2.0, the bond is considered ionic.

covalent bond

instead of gaining and losing electrons, as in ionic bonding, carson and some other atoms share pairs of electrons.

equal sharing of electrons produces _____ which are compounds with no charged regions. This type of bond occurs when there is equal sharing (between the two atoms) of the electrons in the bond. Molecules such as Cl2, H2 and F2 are the usual examples.

nonpolar compunds

Hydrogen bond

Interaction involving a hydrogen atom located between a pair of other atoms having a high affinity for electrons; such a bond is weaker than an ionic bond or covalent bond but stronger than van der Waals forces. These exist between atoms in different molecules or in parts of the same molecule. One atom of the pair (the donor), generally a fluorine, nitrogen, oroxygen atom, is covalently bonded to a hydrogen atom (−FH, −NH, or −OH), whose electrons it shares unequally; its high electron affinity causes the hydrogen to take on a slight positive charge.

Polar bond

This type of bond occurs when there is unequal sharing (between the two atoms) of the electrons in the bond. Molecules such as NH3 and H2O are the usual examples.

during __________ the breakdown of substances, food is degraded and some of that stored energy is released. Microorganisms use nutrients in the same general way

catabolism

Catabolic reactions are considered to be _________ ~ that is they release energy

exergonic

_________ is the buildup or synthesis of substances, energy is used to create bonds

anabolism

most anabolic reactions are said to be ___________ ~ that is they require energy

endergonic

a dissolving medium

solvent

water is a ________

solvent

water is a ________ molecule

polar

the ___________ region around the water molecule is attracted to the __________ ions and the _____________ region of the water molecule is attracted to the ________ ions allowing them to distribute evenly.

positive, negative, negative, positive,

a phenomenon in which the surface of water acts as a thin, invisible, elastic membrane. The polarity of the water gives them a strong attraction for one another but no attraction for gas molecules in air at the water's surface. Therefore the water molecules cling together, forming hydrogen bonds with another molecule below the surface

surface tension

In living cells, __________ allows a thin film of water to cover the membranes and to keep them moist.

surface tension

In an anabolic reaction, the components of water (H+ and OH-) are removed front the reactants to form a larger product molecule


X--H + HO--Y --> X--Y + H2O


This kind of reaction is called a _____________ reaction

dehydration

The _____________ reaction is involved in the synthesis of complex carbohydrates, some lipids (fats) and proteins

dehydration

The _______ reaction occurs in many catabolic reactions where water is added to a reactant to form simple products




X--Y + H2O --> X--H + HO---Y

Hydrolysis

_______reactions occur in the breakdown of large nutrient molecules to release simple sugars, fatty acids, and amino acids.

Hydrolysis

mixture

2 or more substances that are combined in any proportion and are not chemically bound. ie: sugar and salt

solution

a mixture of 2 more more substances in which the molecules of the substances are evenly distributed and ordinarily will NOT separate out upon standing.

In a solution the medium in which the substances are dissolved is the _________

solvent

The substance dissolved in the solvent is the ____________

solute

____________ can consist of atoms, ions and molecules

solutes

particles too large to form true solutions can sometimes form _______________

colloids

_________________ is cells usually are formed from large protein molecules dispersing in water

colloidal dispersions

alkaline

basic

Acid

a hydrogen ion (H+) donor, donating the H+ to a solution

HCL --> H+ + Cl-

acid

-CooH

Carboxyl group

a proton acceptor, or a hydroxyl ion donor, accepting H+ from or donating OH- (Hydroxyl ion)to the solution

base

The bases in living organisms are usually _______

weak

the acids in living organisms are usually _____

weak

__________ is what chemists devised to specify the acidity or alkalinity of a solution

PH scale

the __________ relates proton concentration to ph in a logarithmic scale, meaning the concentration of hydrogen ions (protons) change by the factor of 10 for each unit of scale.

pH scale

A pH of 7 is considered to be __________

neutral

Increasing H+ increases _______________

acidity

Increasing OH- increases _____________

alkalinity

pH of 2

acidic

pH of 12

basic

most organisms grow best between pH of _____ and ______

6.5 and 8.5

pH =

-log(H+)

pure water is acidic, neutral or basic

neutral

growth of fungi usually occurs between the pH of ____ and _____

5 and 9

The basic study of chemistry which is the study of compounds that contain carbon

organic chemistry

the study of chemical reactions that occur in living systems is known as ____________

biochemistry

functional group

a part of a molecule that generally participates in chemical reactions as a unit and that give the molecule some of its chemical properties

the chain of carbon atoms in an organic molecule is the ______________

carbon skeleton

group that contains NH2

amino

the ________ group is responsible for protein formation

amino

group that contains SH

sulfhydride

the ______ group is responsible for the production of energy metabolism and protein structure

sulfahydride

group that contains -COOH

carboxyl

the __________ group is responsible for production of organic acids , lipids and proteins

carboxyl

group that contains -OH

hydroxyl group

group that contains PO4

phosphate

the __________ group is responsible for production of ATP , DNA

phosphate

oxidation

the addition of oxygen or removal of hydrogen or electrons from a substance. ie: burning

reduction

the removal of oxygen or the addition of hydrogen or electrons to a substance

macromolecule

polymers consisting of many small repeating molecules

the smaller molecules are called ___________

monomers

carbohydrates

serve as the main source of energy for all living things

plants make a structural carbohydrate in the form of________

cellulose

plants make a energy storage carbohydrate in the form of________

starch

animals, including humans, store energy in carbohydrates called _________

glycogen

all carbohydrates contain the elements _________, ________ and ____________

carbon, hydrogen and oxygen

There is normally a proportion of _____ hydrogen to each ___ carbon and _____ oxygen

2,1,1

monosaccharides

a simple sugar with 3 to 7 carbon atoms.

glucose and fructose are part of which carbohydrate group?

monosaccharides

isomer

monosaccharides that have the same molecular formula but different structures and different properties

The most abundant monosaccharide

glucose

a sugar & alcohol linkage

glycosidic bond

disaccharide

formed when 2 monosaccharids are connected by the removal of water and the formation of glycosidic bond.

a common disaccharide

table sugar ~ made of glucose and fructose

long chains of repeating units of glucose

polymers

_______________ consist of 10s to 100s of monosaccharides joined through dehydration synthesis

polysaccharides

_________ serves as a way to store energy and cellulose in a structural component of the cell wall

starch

oligosaccharides

___________ contain 2 - 20 monosaccharides

chitin

___________ is a polymer of 2 sugars repeating many times

________ constitute a chemically diverse group of substances that include fats, phospholipids, and sterioids

lipids

_______ are relatively insoluble in water but ate soluble in nonpolar solvents such as ether and benzene

lipids

___________ form part of the structure of cells, especially cell membrains and many can be used for energy

lipids

fats

contain the 3-carbon alcohol glycerol and one or more fatty acids

fatty acid

consists of a long chain of carbon atoms with associated hydrogen atoms and a carboxyl group at one end of the chain

triacylglycerol

hydrogen rich lipid that release a large amount of energy

saturated fat

a simple lipid with no double bonds

unsaturated fat

a simple lipid with one or more double bonds in the fatty acid that has lost at least 2 hydrogens

Cis formation of unsaturated fat

H atom on the same side of the double bond

Trans formation of unsaturated fats

H atoms on opposite sides of the double bonds

____________ are found in the cell membrane

phospholipds

steroids

a 4-ring structure and quite different than other lipids. They include cholesterol, steroid hormones and vit. D

among the molecules found in living things, _______ have the greatest diversity of structure and function.

proteins

_______ are components of eukaryotic membraine

steroids

________ are the building blocks of proteins

amino acids

_________ have at least one animo group (-NH2) and one acidic carboxyl group (-COOH)

amino acids

each amino acid is distinguishable by the different chemical group called the _________ that is attached to the central carbon.

R group

Polymers of amino acids are linked by their __________

peptide bonds

the ____________ structure of protein has a linear sequence of amino acids

primary

the _________ structure of a protein consists of the folding or coiling of the amino acid chains onto itself . EX: alpha helix or pleated sheets

secondary

the _________ structure of the protein produces further bending and folding into globular shapes and fibrous threadlike strands

tertiary

structural proteins

contributes to the 3-D structure of the cell, cell parts and membranes

enzymes

are the protein catalysts and increase the rate at which chemical reactions take place within living organisms in the temperature range compatible with life

catalyst

the substance that controls the rate of chemical reaction in cells

A ______________ is one of the structural components, or building blocks, of DNA and RNA

nucleotide

a ___________ consists of 3 parts


1) a nitrogen base


2) a 5-carbon sugar


3)one or more phosphate groups

nucleotide

The nucleotide _______ is the main source of energy in cells because it stores chemical energy in a form cells can use

ATP

Nucleic acids

__________ consist of long polymers of neucleotides called pollyneucleotides

_____________ contain all the genetic information that determines all the heritable characteristics of a living organism

nucleic acid

the 2 nucleic acids found in living organisms are ________ and _________

RNA and DNA

DNA

stores genetic information, has double strands and is well defined

DNA and RNA

all cellular organisms have ________

Viruses have


~ DNA


~RNA


~Neither


~Both

DNA or RNA

RNA

carries information from the DNA to the sites where protein is being manufactured in cells

The strands of proteins for in opposite direction in _______

DNA

Hydrophillic

attracted to water

hydrophobic

repelled by water

Polysaccharides

found in plant cell walls, in the human liver, muscles and exoskeletons

what type of bond is found between complementary nucleotides on 2 strands of DNA

hydrogen bonds

Adenine, Guanine, Cytosine, Thymine, and phosphoric acids are all found in _____

DNA

Is ribose found in DNA or RNA

RNA

Is deoxyribose found in DNA or RNA

DNA

Is Uracil found in DNA or RNA

RNA

In __________ thymine is replaced by Uracil

RNA

most bacteria can be seen at ________

1-10 macrometers

reflection

bounces off the sample

transmission

can go THROUGH the specimin

Absorption

Is changed by simple direction change

diffraction

when rays of light are bent

resolution

the ability to see 2 separate items as separate and discrete units

refraction

the bending of the light as it passes from one medium to another of different density

what kind of field is good for seeing things like spirokeets or other difficult to see organisms

dark field

(TEM) or transmission

go through the sample like a cutting a slice to see the inside

scanning (SEM)

touches the surface, allowing you to see the surface but not inside

digital microscopy

allows to build a 3D image , usually a thick sample allowing the computer to break down each layer

simple stain

uses a single dye to reveal basic cell shape, and cell arrangement

differential stain

makes use of 2 or more dyes and destinguishes between 2 kinds of organisms or between 2 parts of the organism



Gram stain is a ___________ stain

differential

acid-fast is a ______ stain

differential

The color of the gram stain is determined by the cell's ____________

envelope

mordant

a chemical that helps retain the stain in certain cell walls

in a gram stain a gram _______ organism remains purple

positive

in a gram stain a gram ______ organism show as pink

negative

in a gram stain, the __________ disolves the membrane and will decolorize the organism that is gram negative

alchohol

Ziehl-Neelson acid fast stains are used to identify ____________

mycrobacterium such as TB

negative staining

___________ is used when specimen or part of it, such as the capsule, that resists taking up a stain


Prokaryote

____________ lack a nucleus and other membrane enclosed stuctures

all bacteria are ___________

prokaryotic

eukaryotic

cells that have a nucleus and membrane enclosed structures

all plants, animals, fungi and protists are considered to be __________

eukaryotic

______________cells are surrounded by a cell membrane or plasma membrane


1)prokaryotes


2) eukaryotes


3)neither


4) both

both

where is DNA found in prokaryotic cells?

in a nuclear region NOT surrounded by a membrane

eukaryotic cells have a variety of ________ which are internal structures that are surrounded by one or more membrane

organelles

a unique characteristic of bacteria cell walls is the presence of _______________

peptidoglycan

is a prokaryote is considered to be a archaea, then it has ___________ cell walls

pseudomurein

"ancient" bacteria

archaea

____________are among the smallest organisms

prokaryotes

Prokaryotes reproduce via ________

binary fission

when the DNA is replicated, grows in size, pinched in the middle and then divides, this is considered to be ______________

binary fission

Eukaryotes reproduce via ___________

mitosis

when a cell divides into 2 daughter cells it is called __________

mitiosis

spherical bacteria are called ________

coccus

rodlike bacteria are called _________

bacillus

bacteria that are connected in chains are called

strepto

clusters of bacteria are _________

staph

the ___________ maintains the characteristic shape of the cell and prevents the cell from bursting with fluids flow into the cell

cell wall

murin

another name for peptidoglycan is ___________

the single most important component of the bacterial cell wall is the ________ that is similar to a chain link fence and can be multiple layers thick as seen in gram-positive cells

peptidoglycan

________ is found primarily on gram-negative bacteria, is a bilayer membrane that forms the outermost layer of the cell wall and is attached to the peptidoglycan by an almost continuous layer of small lipoprotein molecules

outer membrane

Glycocalyx

a "sugar coat" found outside the bacterial cell

endotoxin or LPS

_________ is an important part of the outer membrane, is an integral part of the cell wall and is not released until the cell wall of bacteria is dead and breaking down. Used to identify gram-negative bacteria

a distinguishing characteristic of many bacteria is the presence of a ______________ between the cell wall and the cell membrane

periplasmic space

a very active area of the metabolism in the bacteria that contains not only the cell wall peptidoglycan but also many digestive enzymes and transport proteins that destroy potentially harmful substances

periplasmic space

If peptidoglycan is digested from the cell wall of a gram-positive bacteria, they become _______ or cells with a cell membrane but no cell wall

protoplasts

In gram-negative, if the cell wall is digested away , they become ________ which have both a cell membrane and most of the outer membrane

spheroplasts

mycoplasma

bacteria that belong to the genus _____________ have no cell wall but are protected by the the strengthened cell membrane that contains sterols

bacteria that suddenly lose their ability to form cell walls are called __________, usually caused from either natural ocurance or from chemical treatment

L-form

the plasma membrane is also known as the ______

cell membrane

a living membrane that forms a boundry between the cell and its environment

cell membrane

the cell wall is made mostly of _______ and ________

phospholipids , proteins

the _______ of prokaryotic cells is the semifluid substance inside the cell membrane

cytoplasm

____________ consist of RNA and protein

Ribosomes

polyribosomes

long chains of ribosomes

neatly spherical, stain densly and contain a large and a small subunit

Ribosomes

__________ serve as a site for protein synthesis

ribosomes

instead of a nucleus, bacteria have what is called a __________ or ____________

nuclear region, nucleiod

the centrally located nuclear region of bacteria consists mostly of __________

DNA

photosynthetic bacteria and cyanobacteria contain internal membrane systems called ______________

chromatophores

bacteria can have within their cytoplasm a variety of small bodies collectively refered to as __________ that are sometimes called granules and cesicles

inclusions

granules

the _______ is not bound by a membrane but it contains glycogen and polyphosphate, which are so densely compacted that they do not easily disolve in cytoplasm.

glycogen

a glucose polymer used for energy

polyphosphate

a phosphate polymer that supplies phosphate for a variety of metabolic processes.

__________ are found outside the cell wall, attached to a protein hook, and anchored to the wall and membrane by the basal body

flagella

__________ is used to prevent phagocytosis, is neatly organized and made of sugar

capsules

when a flagella moves ____ it forms a bundle and pushes the bacteria in a "run" or forward motion

counterclockwise

when a flagella moves ___________ the bundle is disassembled, the flagella all come out and the bacteria tumbles randomly

clockwise

in a _____________ a bacteria will have an equal # of runs and tumbles

buffer solution

when a bacteria comes into contact with something they like, the flagella will cause it to ___________

have longer runs and fewer tumbles

a modification of a flagella found in spirochetes where the rotation causes the cell to move is called ______

axial filaments

another name for axial filaments

endflagella

_________ allows cell membranes to connect and exchange DNA

"sex pili"

_______ help bacteria adhere to the surface, such as the cell surface, water, and air, and contribute to the pathogenicity of certain bacteria.

fimbriae and Pili

a _______ is the protective structure outside the cell wall of the organism that secretes it. Only certain types of bacteria have this ability.

capsule

slime layer

less tightly bound to the cell wall and is usually thinner than the capsule. this _________ protects the cell from drying out

the ___________ is how the proteins move in and out in diferent directions depending on their function. Phospholopids rotate and move laterally and the membrane is a viscous as olive oil

fluid mosaic model

the prokaryotic __________ is constantly moving, shifting and very fluid, may be saturated or unsaturated and acts as a barrier that is very selective.

plasma membrane

osmosis

the movement of water acorss a selectively permeable membrane from an area of high concentratino to low concentration

osmotic pressure

the pressure needed to stop the movement of water across the membrane

active transport

_____ involves energy in the form of ATP. When there is something going against the gradient, energy is used.

movement of material across membranes happens via ________

active transport

__________ are environmentally and clinically important because they trigger the the expression of genes that form spores

endospores

in eukaryotic cells, the _______ contains the carbohydrates, attach to the proteins and steroids


ie: cholesterol

plasma membrane

in the eukaryotic cell, the _______ is full of matrix proteins that determine shape

cytoplasm

In eukaryotic cells, the ___ hold nucleuic acids

nucleus

In eukaryotic cells the __________ is the extensive system of membranes that form the tubes and plates of the cytoplasm, can be rough or smooth and contains the enzymes that sythesize lipids (especially those used to make the membrane)

endoplasmic reticulum

the _______of eukaryotic cells are larger than those found in prokaryotic cells, are ~60% RNA, and !40% protein. They provide sites for protein synthesis and some form chains that attach to the endoplasmic reticulum to make proteins for secretion from the cells.

endoplasmic reticulum

in eukaryotic cells, the _________ is a stack of flattened membranous sacs, that receives substances transported fromt he endoplasmic reticulum, stores the substances and alters their chemical structure. It also helps to form the plasma membrane and membranes of the lysosomes

golgi apparatus

in eukaryotic cells, you will find ________ which are extremely small membrane covered organells made by the golgi apperatus in animal cells. destroy invaders, digest and destroy.

lysosomes

in eukaryotic cells, you will find __________ which are small membrane enclosed organelles filled with enzymes. While they are found in both plants and animal cells, they have different functions. In animals they oxidize amino acids, and in plants the oxidize fats. They convert hydrogen peroxide to water in both plants and animals.

peroxismomes

In eukarytoic cells you will find ___________ which are membrane enclosed structures that store material such as starch, glycogen, or fat to be used for energy.

vacuoles

the __________ is a network of protein fibers make of microtubuals and microfiliments that supports and gives rigidity and shape to a cell. they have filiments that can be pulled in or away

cytoskeleton

is a structural polysaccharide that is also commonly found in the exoskeleton of arthropods, give regidity to cell walls to keep them from bursting as water moves in and out.

chitin

endosymbiotic theory

at some point the eukariotic cells took in the prokaryotic cell where mutation occures. this was beneficial for both, though now they can not live without one another.

________ moves a substance from the outside of a bacteria cell to the inside while chemically modifying the substance so it can not be defused out.

group translocation reaction

hypertonic

a fluid is ________ if it causes the cells to shrivel or shrink as water moves out of them and into the fluid environment

hypotonic

the fluid is ________ to the cells if the cell swells or bursts as water moves from the environment into the cell.

metabolism

______is the sum of all the chemical processes carried out by a living organism

anabolism

the reactions that require energy to synthesize complex molecules from simplier ones is called ____________

catabolism

the reaction that releases energy by breaking complex molecules into smaller ones that can then be used as buuilding blocks.

____________ is needed for growth, reproduction, and repair of cellular structures

anabolism

___________ is needed to provide organisms with energy for its life processes including movement, transport, and the synthesis of anabolism

catabolism

all catabolic reactions involve ______ which allows energy to be captured in high-energy bonds in ATP and similar molecules

electron transfer

___________ is directly related to oxidation and reduction

electron transfer

oxidation

________can be defined as a loss or removal of electrons

reduction

can be defined as the gain of electrons

autotrphy

the self-feeding method of capturing energy to obtain carbon

heterotrphy

the other-feeding method of capturing energy to obtain carbon

photoautotrophs

obtain energy from light

chemoautotrophs

obtain energy from oxidizing simple inorganic substances such as sulfides and nitrites

heterotrophs

get their carbon from ready-made organic molecules which they obtain from other organisms living or dead

photoheterotrophs

obtain chemical energy from light

chemoheterotrohs

obtain chemical energy from breaking down ready-made organic compounds

____________ metabolism is important as means of energy capture in many free-living organisms, such as microorganisms that do not cause diease

autotrophic

nearly all microorganisms, including nearly all those that cause infections are ___________

chemoheterotrophs

fermentation, glycolysis, and aerobic respiration are all methods used in _______

chemoheterotrophs

glycolysis and fermentation do not require _____ and only use a small amount of energy of the energy in glucose molecule is captured in the ATP

oxygen

_________ respiration requires oxygen as an electron acceptor and captures a reletively large amount of the energy in a glucose molecule in ATP

aerobic

all organic molecules are considered to be

heterotrphs

_______ pathways capture energy in a form cells can use

catabolic

__________ pathways make the complex molecules that form the structure of cells, enzymes, and other molecules that control cells

anabolic

bacteria transfers 40% of the energy in a glucose molecule to ATP during __________ metabolism. are organismsthat do not use oxygen; they include some that arekilled by exposure to oxygen

aerobic

energy released in a __________ reaction is captured, stored, in the form of ATP molecules which later get broken down to form energy needed to build up new molecules in biosynthetic pathways

catabolic

the energy required to start a reaction is called ______ and can be thought of a hurdle a molecule must be raised to get a reaction started

activation energy

each enzyme has a location on its surface called the _________ which is a binding site, that provides a surface on which reactions take place

active site

the substance in which an enzyme acts

the substrate

intracellular enzymes that act within the cell that produced them are _____

endoenzymes

extracellular enzymes that are synthesized on a cell but cross the cell membrane to act in the peroplasmic space or in the cell's immediate environment are _________

exoenzymes

many enzymes can catalize a reaction only if a substance called _______________ is present.

coenzyme or cofactor

a __________ is a nonprotein organi molecule bound to or loosely associated with an enzyme and are synthesized to form vitamins

coenzyme

a _________ is usually an inorganic ion such as magnesium, zinc, or mnganese, that improve the fit of an enzyme with its substrate and their presence can be essential in allowing a reaction to proceed

cofactor

A molecule similar in structure to a substrate cansometimes bind to an enzyme’sactive site even though the moleculeis unable to react. Thisnonsubstrate molecule is said toact as a_______ofthe reaction because it competeswith the substrate for the activesite

competitive inhibitor

the __________binds to an active site, itprevents the substrate frombinding and thereby inhibits thereaction.

competitive inhibitor

Enzymes also can be inhibited by substances called which distort the tertiary protein structure and alterthe shape of the active site. Any enzyme molecule thusaffected no longer can bind substrate, so it cannot catalyzea reaction.

noncompetitive inhibitors

Feedback inhibition

________ is a kind of reversible noncompetitiveinhibition, regulates the rate of many metabolicpathways. For example, when an end product of apathway accumulates, the product often binds to and inactivatesthe enzyme that catalyzes the first reaction inthe pathway.

Like other proteins,_____________ are affected by heat andby extremes of pH. Even small pH changes can alterthe electrical charge on various chemical groups thereby altering the abilityto bind its substrate and catalyze a reaction.

enzymes

Enzymes can catalyze a reaction to go in eitherdirection: AB ? A 1 B or A 1 B ? AB. The concentrationsof substrates and products are among severalfactors that determine the direction of a reaction. A highconcentration of_____drives the reaction toward formationof A and B.

AB

When neither AB nor A and B are removed fromthe system, the reaction will ultimately reach a steadystate known as _________ where nonet change in the concentrations of AB, A, or B occurs.

chemical equilibrium

The _________ of enzyme available usually controls therate of a metabolic reaction

quantity

The reaction rate __________ with the number ofenzyme molecules and reaches a maximum when allavailable enzyme molecules are working at full capacity.

increases

________is the metabolic pathway used bymost autotrophic and heterotrophic organisms, bothaerobes and anaerobes, to begin to break down glucose

Glycolysis

________ does not require oxygen, but it can occurin either the presence or absence of oxygen

glycolysis

_________is the additionof a phosphate group to a molecule, often from ATP.This addition generally increases the molecule’s energy.Thus, phosphate groups commonly serve as energy carriersin biochemical reactions.

Phosphorylation

After phosphorylation,__________ is broken into twothree-carbon molecules, and each molecule is oxidizedas two electrons are transferred from it to NAD.

glucose

Energy is captured in ATP at the ________ level, that is, in the direct course of glycolysis—in two separatereactions late in the process.

substrate

Because energyfrom two ATPs was used in the initial phosphorylations,glycolysis results in a net energy capture ofonly ____ ATPs per glucose molecule.

two

One process bywhich pyruvic acid is subsequentlymetabolized in the absenceof oxygen is_______

fermentation

_________ is the result of theneed to recycle the limitedamount of NAD by passing theelectrons of reduced NAD off toother molecules. It occurs bymany different pathways

fermentation

The simplest pathway for pyruvic acid metabolism is ___________in which only (homo-) lacticacid is made. Pyruvic acid is converteddirectly to lactic acid, using electrons from reducedNAD. Unlike other fermentations, this type produces nogas. It occurs in some types of the bacteria called lactobacilli,in streptococci, and in mammalian muscle cells.

homolactic acid fermentation,

In ________ carbon dioxideis released from pyruvic acid to form the intermediateacetaldehyde, which is quickly reduced to ethyl alcoholby electrons from reduced NAD., although rare in bacteria, is common in yeasts andis used in making bread and wine

alcoholic fermentation

Although aerobes obtain some of their energyfrom glycolysis, they use glycolysis chiefly as a preludeto a much more productive process, one that allowsthem to obtain far more of the energy potentially availablein glucose. This process is _________

aerobic respiration

the __________ metabolizes two-carbon units called acetyl groups to CO2 and H2O. It also is called the tricarboxylic acid(TCA) cycle, because some molecules in the cycle havethree carboxyl (COOH) groups, or the citric acid cycle,because citric acid is an important intermediate

Krebs cycle

Before pyruvic acid (the product of glycolysis) canenter the Krebs cycle, it must first be converted to __________ This complex reaction involves the removalof one molecule of CO2, transfer of electrons to NAD,and addition of coenzyme A

acetyl-CoA.

_______ is a sequence of reactions in whichacetyl groups are oxidized to carbon dioxide. Hydrogenatoms are also removed, and their electrons are transferredto coenzymes that serve as electron carriers. Each reaction is controlled by a specific enzyme, and themolecules are passed from one enzyme to the next as theygo through the cycle

Krebs cycle

___________ the process leading to the transferof electrons from substrate to O2, begins during oneof the energy-releasing dehydrogenation reactions ofcatabolism.

Electron transport,

the _________, which is often called the respiratory chain,

electron transportchain

ADP is converted to ATP by alarge ATP-synthesizing complex called ATP synthase(or ATPase) in a process known as_______.This process is the result of a seriesof chemical reactions that occur in and around a membrane.

chemiosmosis

___________performs two basicfunctions: (1) accepting electrons from an electron donorand transferring them to an electron acceptor, and(2) conserving for ATP synthesis some of the energy releasedduring the electron transfer.

electron transport chain

The large amountsof energy obtained from aerobic respiration result from the transfer of electrons through the electron transportchain, from a level of_________energy to one of_________ energy with the formation of ATP.

high, low

Energy is capturedin high-energy bonds as Pi combines with ADP toform ATP. This process is known as________________

oxidative phosphorylation

Inaerobic respiration,__________ is the final electron acceptorand becomes reduced to water

oxygen

From the metabolism of a single glucose molecule, ______pairs of electrons are transported by NAD

10 (2 pairsfrom glycolysis, 2 pairs from the pyruvic acid to acetylCoAconversion, and 6 pairs from the Krebs cycle)

Electrons entering at FADstart partway down the chain and contribute onlyenough energy to make two ATPs. Thus, during aerobicmetabolism of a glucose molecule, the 10 pairs of electronsfrom NAD produce 30 ATPs, and 2 pairs fromFAD produce 4 ATPs, for a total of 34 ATPs. Includingthe 2 ATP molecules from glycolysis and the 2 GTPmolecules (52 ATPs) from the Krebs cycle gives a totalyield of 38 ATPs per glucose molecule.

Oxidative phosphorylation, when compared withfermentation, generates the _________amount of energyfrom glucose.

greater

The net gain of ATP molecules from fermentationis ______

2

Electrons for the hydrogen atoms removed from the reactionsof the Krebs cycle are transferred through theelectron transport system, which generates the highenergybonds of ATP. ADP is converted to ATP by alarge ATP-synthesizing complex called _________

d ATP synthase(or ATPase)

Chemiosmosis occurs in the __________ of prokaryotes

cell membrane

Chemiosmosis occurs in the __________ of eukaryotes

mitochondrial membrane

Some bacteria use only parts of the Krebs cycle and theelectron transport chain. They do notuse free O2 as their final electron acceptor.Instead, in aprocess called _________they use inorganicoxygen-containing molecules such as nitrate (NO23 ), nitrite(NO22 ), and sulfate (SO2 24 )

anaerobic respiration

Becauseanaerobes use less of the metabolic pathways, they produce _______ATP molecules than do aerobic organisms.

fewer

___________ breaks down the glucoseand pentose and produces NADPH (reduced) and nucleic acid precursors

pentose phoshphate pathway

____ produces NADPH (reduced) and ATP, does not involve glycoysis

enter-Doudoroff pathway

_______ re-oxidizes NADH (reduced) to allow NAD+ (oxidized) usage in glycolisis

fermentation

In the ____________ light strikesthe green pigment chlorophyll a in thylakoids of chloroplasts. Electrons in the chlorophyllbecome excited—that is, raised to a higher energy level.These electrons participate in generating ATP in cyclicphotophosphorylation and in noncyclic photoreduction

light-dependent (light) reactions

in _________excitedelectrons from chlorophyll are passed down an electrontransport chain. As they are transferred, energy is capturedin ATP by chemiosmosis . When theelectrons return to the chlorophyll, they can be excitedover and over again, so the process is said to be cyclic

cyclic photophosphorylation

In ___________ or carbonfixation, occur in the stroma of chloroplasts. Carbon dioxideis reduced by electrons from NADPH in a processknown as the Calvin-Benson cycle. Energy from ATP and electrons from NADPH arerequired in this synthetic process. Various carbohydrates,chiefly glucose, are the products of this reaction s

light-independent (dark) reactions

_______is typically a circular (in prokaryotes)or linear (in eukaryotes), threadlike molecule ofDNA

chromosome

Genes with different informationat the same locus are called __________

alleles

___________ is a permanent alterationin DNA. usually change the sequenceof nucleotides in DNA and thereby change theinformation in the DNA.

mutations

All the information for the structure and functioning ofa cell is stored in _______

DNA

DNA makes new DNA

replication

DNA makes RNA as the first stepin protein synthesis.In the overall process of protein synthesis, thesynthesis of mRNA from a DNA template is called_________

transcription

RNA links amino acids together toform proteins. The synthesis of protein from informationin mRNA is called

translation

In protein synthesis, the new polymer is a particular typeof RNA called __________ which thenserves as a second template that dictates the arrangementof amino acids in a protein. Some proteins form the structureof a cell, others (enzymes) regulate its metabolism,and still others transport substances across a membrane

mRNA

In ___________ aprocess whereby RNA can make DNA. This DNA canthen make more RNA. Such viruses are known as retrovirusesbecause of this reverse process.

reverse transcription

________is a less accurate process than regular transcription. Uncorrectederrors are passed on as mutations, or permanentchanges in the genes of an organism.

reverse transcription

_________ the points at which the two strands of DNAseparate to allow replication of DNA

replicationforks

Molecules of the enzyme _________ movealong behind each replication fork, synthesizing newDNA strands complementary to the original ones at aspeed of approximately 1,000 nucleotides per second and also growing strand,correcting errors such as mismatched bases.

DNA polymerase

The enzyme DNA polymerase can add nucleotidesonly to the _____end of a growing DNA strand.

3"

s atemplate for the synthesis of a continuous new strand that going in the 50 to 30 direction.

leading strand

runs in the 30 to 50 direction, thesynthesis of new DNA, the ______________ must be discontinuous;that is, the polymerase must continuallyjump ahead and work backward, making a series ofshort DNA segments called Okazaki fragments.

lagging strand

DNA polymerase will digest the RNAprimer and replace it with DNA. The fragments are thenjoined together by another enzyme called a _______

ligase

After separatingthe DNA strands, the enzyme __________binds toone strand of exposed DNA recognizing a sequence ofnucleotide bases in the DNA that indicates this is the startof a gene (promoter sequence)

RNA polymerase

In prokaryotes, transcription and translation bothtake place in the _________

cytoplasm

in eukaryotes, transcriptiontakes place in the __________

cell nucleus

___________binds closely to certainproteins to form two kinds of ribosome subunits. A subunitof each kind combines to form a ribosome. They serve as binding sites fortransfer RNA, and some of their proteins act as enzymesthat control protein synthesis

Ribosomal RNA (rRNA)

_______ is synthesized in unitsthat contain sufficient information to direct the synthesisof one or more polypeptide chains.

Messenger RNA (mRNA)

The first codon in a molecule of mRNA acts as a ________and always codes for the amino acid methionine,even though the methionine may be removed fromthe protein later

start codon

The last codon to be translated in amolecule of mRNA is a ___________ and acts as a kind of punctuation mark to indicate the end ofa protein molecule

terminator (stop codon)

codons thatcode for an amino acid are called______

sense codons

Although geneticinformation is stored in DNA, the genetic code is writtenin codons of _____

mRNA

The function of _________ is to transfer amino acids fromthe cytoplasm to the ribosomes for placementin a protein molecule

transfer RNA(tRNA)

Each tRNA has athree-base __________ that is complementaryto a particular mRNA codon. It also has a bindingsite for an amino acid—the particular amino acidspecified by the mRNA codon

anticodon

Found in the cytoplasm, where they pick upamino acids and transfer them to mRNA

transfer RNA

___________ is an important process in bacterial growth,uses 80 to 90% of a bacterial cell’s energy.

Protein synthesis,

Thelocation on the ribosome where the first tRNA pairs iscalled the ______

P site

The second codon of the mRNA thenpairs with a tRNA that transports the second amino acidto the ____

A site

__________shuttle back and forthpicking up amino acids in the cytoplasm, and bringing themto the ribosome, where the amino acids are incorporatedinto protein.

tRNAs

In __________ enzyme activity is regulateddirectly, and the control mechanism determines how rapidlyenzymes already present will catalyze reactions.

feedback inhibition

In _____________ regulation occursindirectly by enzyme synthesis, and the control mechanismdetermines which enzymes will be synthesized andin what amounts.

enzyme induction and enzyme repression

In feedback inhibition, also called________the end product of a biosynthetic pathway directlyinhibits the first enzyme in the pathway.

end-product inhibition

At one point in the investigation of metabolic regulation,it was discovered that certain organisms alwayscontain active enzymes for glucose metabolism evenwhen glucose is not present in the medium. Such enzymesare called ___________

constitutive enzymes

When lactose is present,however, the cells synthesize the enzymes needed forits metabolism. This phenomenon is __________ controls the breakdownof nutrients as they become available in the growthmedium. Such a system is turned on when a nutrient isavailable and turned off when it is depleted

enzyme induction

______, a model that explainsthe regulation of some protein synthesis in bacteria

operon (op0er-on) theory,

_______ is a sequenceof closely associated genes that regulate enzyme production.

operon

An operon includes one or more ___________ which carry information for the synthesis of specific proteinssuch as enzyme molecules

structural genes

__________ control the expression of the structural genes.

regulatory site

___works in conjunction with the operonbut may be located some distance from it

regulator (i) gene

_____ is a protein that binds to theoperator and prevents transcription of the adjacent Z, Y,and A genes. Consequently, the enzymes that metabolizelactose are not synthesized.

repressor

When present in the medium, lactose acts as the _________ by binding to and inactivating the lac repressor.TheRNA polymerase then binds to the promoter, causingthe operator to initiate transcription of the Z, Y, and Agenes as a single long strand of mRNA.

inducer

_______ breaks downlactose into glucose and galactose

b-galactosidase

______typically regulatesanabolism. It controls processes in which substancesneeded for growth are synthesized. Synthesis of theamino acid tryptophan, for example

enzyme repression

_________ allows transcriptionof the trp operon to begin but terminates it prematurelyby a complex process when sufficient amounts oftryptophan are already present in the cell.

attenuation,

the lac operon that we describedpreviously is repressed when glucose is presentin adequate quantities, an effect known as _________ In this way the cell saves energy by not makingenzymes it doesn’t need

catabolite repression

__________ refers to the genetic informationcontained in the DNA of the organism

Genotype

_______refers to the specific characteristics displayed by the organism.

Phenotype

Mutations always change the_______

genotype.

________ is a mutation that affect a single base. is a base substitution, or nucleotidereplacement, in which one base is substituted foranother at a specific location in a gene. The mutationchanges a single codon in mRNA, and it may or may notchange the amino acid sequence in a protein.

point mutations,

__________is a mutation that can affect more than one base in DNA. n is a mutation in which there isa deletion or an insertion of one or more bases. Such mutations alter all the three-base sequencesbeyond the deletion or insertion. When mRNA transcribedfrom such altered DNA is used to synthesize aprotein, many amino acids in the sequence may be altered.

frameshift mutations

bacteria that have lost the ability to synthesizea particular enzyme have played an importantrole in our understanding of metabolic pathways. Suchnutritionally deficient mutants are called _______they require special substances in their medium to maintaingrowth.

auxotrophs

normal, nonmutantforms are called _______ orwild types.

prototrophs

__________ occurin the absence of any agent known tocause changes in DNA. They ariseduring the replication of DNA and appearto be due to errors in the basepairing of nucleotides in the old andnew strands of DNA.

Spontaneous mutations

________ are produced by agents called mutagens,which increase the mutation rate above the spontaneousmutation rate. Mutagens include chemical agentsand radiation

Induced mutations

_________ is a is a molecule quite similar in structureto one of the nitrogenous bases normally found in DNA.

base analog

__________ are are substances that add alkylgroups (such as a methyl group, —CH3) to other molecules. Such a change can give rise to a point mutation.

Alkylating agents

_____________ such as nitrous acid (HNO2)remove an amino group (—NH2) from a nitrogenous base. Removing an amino group from adenine causes itto resemble guanine

Deaminating agents

__________ cause frameshift mutations.. This moleculeor one of its derivatives can become inserted in the DNAdouble helix, displacing both members of a base pair.Such a modification distorts the helix and causes partialunwinding of the DNA strands.

, acridine derivatives

_________occurs in the presenceof visible light in bacteria previously exposed toultraviolet light. When organisms containing dimers arekept in visible light, the light activates an enzyme thatbreaks the bonds between the pyrimidines of a dimer

photoreactivation

________ occurs in some bacteria, and cantake place in the presence or absence of light, requiresseveral enzyme-controlled reactions

Dark repair