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430 Cards in this Set
- Front
- Back
Microbiology |
The study of Microbes |
|
Microbes |
organisms so small that a microscope is needed to study them |
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Cells |
the basic unit of structure and function in living things |
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Viruses |
a submicroscopic , parasitic, acellular organism composed of nucleic acid (DNA or RNA) core inside a protein coat |
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Bacteria |
single-celled organisms with a spherical, rod, or spiral shapes but a few form filiment althought cellular, they HAVE NO NUCLEUS and they lack a membrane enclosed structure. |
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cellular |
can live alone |
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acellular |
not consisting of , diving into or containing cells |
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prokaryotic |
don't have a nucleus |
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eukaryotic |
have a nucleus |
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Archaea |
are prokaryotic and cellular |
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Bacteria |
are prokaryotic and cellular |
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Algae |
eukaryotic and cellular |
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Fungi |
are eukaryotic and cellular |
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Protozoa |
eukaryotic and cellular |
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Various species are involved in fermentation, putrefication, infectious disease or nitrogen fixation |
bacteria |
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Algea |
any of a numerous group of chlorophill containing, mainly aquatic, eukaryotic organisms ranging from microscopic single celled forms to multicellular forms. |
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these are distinguished from plants by the abcence os the true roots, stems, leaves and lack of non reproductive cells in the reproductive structure |
algea |
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Fungi |
a diverse group of eukaryotic single celled organisms that live by decomposing and obsorbing organic materials in which they grow, comprising the mushroom, molds, mildews, smuts, rusts and yeast |
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Robert Hooke |
reported that living things were composed of little boxes or cells |
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Leeuwenhoek |
1st to see living organisms through a microscope |
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Spontaneous generation |
the hypothesis that living organisms arise from nonliving matter; a vital force forms life |
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Biogenesis |
the hypothesis that the living organism arise from preexisting life |
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Pasteur |
The father of microbiology, developed techniques to weaken an organism so they will product immunity without producing disease |
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Pasteurization |
The application of a high heat for a short time |
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cell theory |
that cells are the fundamental units of life and carry out all the basic functions of living things This still applies today to all cellular organisms except bacteria |
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Koch's Postulate |
provided a method of establishing the germ theory of disease 1) the specific causative agent must be found in every case of the disease 2) The disease organism must be isolated in pure culture 3) Inoculation of a sample if the culture into a healthy, susceptable animal must produce the same disease 4) The disease organism must be recovered from the innoculated animal. |
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Liser |
proved and created the 1st aseptic techniques in order to prevent the spread of infection |
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Chemotherapy |
treatment with chemicals |
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Cheotherapeutic agents used to treat infectious disease can be _______________ or ___________ |
synthetic agents , antibiotics |
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antibiotics |
chemicals produced by bacteria and fungi that inhibit or kill other microbes |
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antibodies |
molecules the body immune system produces to combat invading microbes and their toxic products. |
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bacteriophages |
(also called a phage) the future of microbiology. The viruses that attack and kill specific kinds of bacteria |
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Jenner |
used fluid from cowpox blisters to immunize against "smallpox", thus creating the 1st immunization |
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Human genome project |
microbial genetic techniques have made possible a colossal scientific undertaking to identify the location and chemical sequence of all the genes in the human genome |
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Bacteriophage Therapy |
is the therapeutic use of bacteriophages to treat pathogenic bacterial infections |
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Genomics |
is a discipline in genetics that applies recombinant DNA, DNA sequencing methods, and bioinformatics to sequence, assemble, and analyze the function and structure of genomes (the complete set of DNA within a single cell of an organism). |
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viroid |
an infectious RNA partical smaller than a virus and lacking a capsid, that causes various plant diseases |
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Prion |
an exceedingly small infectious particle of protein without any nucleic acid |
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domain |
a new taxonomic category above the kingdom level , consisting of the Archaea, bacteria and eukarya |
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microbe |
organisms studies with a microscope , including viruses |
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Chemistry |
the study of interactions between atoms and molecules |
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Atom |
the smallest unit of matter that enters into a chemical reaction
|
|
when two or more atoms combine chemically, they form ____________ |
molecules
|
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Molecules made up of atoms of 2 or more elements are called _________________ |
compounds |
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Subatomic particles |
protons, neutrons and electrons |
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electrons have a _________ charge |
negative |
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protons have a _________ charge |
positive |
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neutrons have a ________ charge |
neutral |
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atoms normally have _____________ number of electrons and protons |
equal |
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atoms are normally considered to be electrically ___________ |
neutral |
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The protons and neutrons can be found in the _______________ |
nucleus |
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matter composed of one kind of atom is called an ____________ |
element |
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The atoms of a particular element always have the same # of protons and that # of protons is also the ____________ |
atomic number |
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Electrons with the ____________ amount of energy are found nearest the nucleus |
least |
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Rule of the octets |
a chemical rule of thumb that reflects observation that atoms of main-group elements tend to combine in such a way that each atom has eight electrons in its valence shell, giving it the same electronic configuration as a noble gas. |
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ion |
a charged atom produced when an atom gains or loses one or more elctrons |
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anion |
a negatively charged ion ~ an atom that gains an electron to fill its outer shell |
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cation |
a positively charged ion ~ when an atom loses one if its electrons in the outer shell without also losing a proton |
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when an outer shell is full it is said to be more ______________ |
stable |
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The sum of the # of protons and neutrons in an atom is the ________ |
atomic # |
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Isotope |
Atoms of a particular element that contain a different # of neutrons. |
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a __________ or _________ is the weight of a substance in grams equal to the sum of the atomic weight of the atoms in a molecule of the substance. |
a gram molecular weight , mole |
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__________ form between atoms through the interactions of electrons in their outer shell. Energy associated with these bonding electrons hold the atoms together, forming molecules |
chemical bonds |
|
Ionic bonds |
result from the attraction between the ions that have opposite charges. This type of bond occurs when there is complete transfer (between the two atoms) of the electrons in the bond. (+) + (-) = ionic bond The rule is that when the electronegativity difference is greater than 2.0, the bond is considered ionic. |
|
covalent bond |
instead of gaining and losing electrons, as in ionic bonding, carson and some other atoms share pairs of electrons. |
|
equal sharing of electrons produces _____ which are compounds with no charged regions. This type of bond occurs when there is equal sharing (between the two atoms) of the electrons in the bond. Molecules such as Cl2, H2 and F2 are the usual examples. |
nonpolar compunds |
|
Hydrogen bond |
Interaction involving a hydrogen atom located between a pair of other atoms having a high affinity for electrons; such a bond is weaker than an ionic bond or covalent bond but stronger than van der Waals forces. These exist between atoms in different molecules or in parts of the same molecule. One atom of the pair (the donor), generally a fluorine, nitrogen, oroxygen atom, is covalently bonded to a hydrogen atom (−FH, −NH, or −OH), whose electrons it shares unequally; its high electron affinity causes the hydrogen to take on a slight positive charge. |
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Polar bond |
This type of bond occurs when there is unequal sharing (between the two atoms) of the electrons in the bond. Molecules such as NH3 and H2O are the usual examples. |
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during __________ the breakdown of substances, food is degraded and some of that stored energy is released. Microorganisms use nutrients in the same general way |
catabolism |
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Catabolic reactions are considered to be _________ ~ that is they release energy |
exergonic |
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_________ is the buildup or synthesis of substances, energy is used to create bonds |
anabolism |
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most anabolic reactions are said to be ___________ ~ that is they require energy |
endergonic |
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a dissolving medium |
solvent |
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water is a ________ |
solvent |
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water is a ________ molecule |
polar |
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the ___________ region around the water molecule is attracted to the __________ ions and the _____________ region of the water molecule is attracted to the ________ ions allowing them to distribute evenly. |
positive, negative, negative, positive, |
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a phenomenon in which the surface of water acts as a thin, invisible, elastic membrane. The polarity of the water gives them a strong attraction for one another but no attraction for gas molecules in air at the water's surface. Therefore the water molecules cling together, forming hydrogen bonds with another molecule below the surface |
surface tension |
|
In living cells, __________ allows a thin film of water to cover the membranes and to keep them moist. |
surface tension |
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In an anabolic reaction, the components of water (H+ and OH-) are removed front the reactants to form a larger product molecule X--H + HO--Y --> X--Y + H2O This kind of reaction is called a _____________ reaction |
dehydration |
|
The _____________ reaction is involved in the synthesis of complex carbohydrates, some lipids (fats) and proteins |
dehydration |
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The _______ reaction occurs in many catabolic reactions where water is added to a reactant to form simple products X--Y + H2O --> X--H + HO---Y |
Hydrolysis |
|
_______reactions occur in the breakdown of large nutrient molecules to release simple sugars, fatty acids, and amino acids. |
Hydrolysis |
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mixture |
2 or more substances that are combined in any proportion and are not chemically bound. ie: sugar and salt |
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solution |
a mixture of 2 more more substances in which the molecules of the substances are evenly distributed and ordinarily will NOT separate out upon standing. |
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In a solution the medium in which the substances are dissolved is the _________ |
solvent |
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The substance dissolved in the solvent is the ____________ |
solute |
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____________ can consist of atoms, ions and molecules |
solutes |
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particles too large to form true solutions can sometimes form _______________ |
colloids |
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_________________ is cells usually are formed from large protein molecules dispersing in water |
colloidal dispersions |
|
alkaline |
basic |
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Acid |
a hydrogen ion (H+) donor, donating the H+ to a solution |
|
HCL --> H+ + Cl- |
acid |
|
-CooH |
Carboxyl group |
|
a proton acceptor, or a hydroxyl ion donor, accepting H+ from or donating OH- (Hydroxyl ion)to the solution |
base |
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The bases in living organisms are usually _______ |
weak |
|
the acids in living organisms are usually _____ |
weak |
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__________ is what chemists devised to specify the acidity or alkalinity of a solution |
PH scale |
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the __________ relates proton concentration to ph in a logarithmic scale, meaning the concentration of hydrogen ions (protons) change by the factor of 10 for each unit of scale. |
pH scale |
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A pH of 7 is considered to be __________ |
neutral |
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Increasing H+ increases _______________ |
acidity |
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Increasing OH- increases _____________ |
alkalinity |
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pH of 2 |
acidic |
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pH of 12 |
basic |
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most organisms grow best between pH of _____ and ______ |
6.5 and 8.5 |
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pH = |
-log(H+) |
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pure water is acidic, neutral or basic |
neutral |
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growth of fungi usually occurs between the pH of ____ and _____ |
5 and 9 |
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The basic study of chemistry which is the study of compounds that contain carbon |
organic chemistry |
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the study of chemical reactions that occur in living systems is known as ____________ |
biochemistry |
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functional group |
a part of a molecule that generally participates in chemical reactions as a unit and that give the molecule some of its chemical properties |
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the chain of carbon atoms in an organic molecule is the ______________ |
carbon skeleton |
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group that contains NH2 |
amino |
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the ________ group is responsible for protein formation |
amino |
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group that contains SH |
sulfhydride |
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the ______ group is responsible for the production of energy metabolism and protein structure |
sulfahydride |
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group that contains -COOH |
carboxyl |
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the __________ group is responsible for production of organic acids , lipids and proteins |
carboxyl |
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group that contains -OH |
hydroxyl group |
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group that contains PO4 |
phosphate |
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the __________ group is responsible for production of ATP , DNA |
phosphate |
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oxidation |
the addition of oxygen or removal of hydrogen or electrons from a substance. ie: burning |
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reduction |
the removal of oxygen or the addition of hydrogen or electrons to a substance |
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macromolecule |
polymers consisting of many small repeating molecules |
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the smaller molecules are called ___________ |
monomers |
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carbohydrates |
serve as the main source of energy for all living things |
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plants make a structural carbohydrate in the form of________ |
cellulose |
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plants make a energy storage carbohydrate in the form of________ |
starch |
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animals, including humans, store energy in carbohydrates called _________ |
glycogen |
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all carbohydrates contain the elements _________, ________ and ____________ |
carbon, hydrogen and oxygen |
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There is normally a proportion of _____ hydrogen to each ___ carbon and _____ oxygen |
2,1,1 |
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monosaccharides |
a simple sugar with 3 to 7 carbon atoms. |
|
glucose and fructose are part of which carbohydrate group? |
monosaccharides |
|
isomer |
monosaccharides that have the same molecular formula but different structures and different properties |
|
The most abundant monosaccharide |
glucose |
|
a sugar & alcohol linkage |
glycosidic bond |
|
disaccharide |
formed when 2 monosaccharids are connected by the removal of water and the formation of glycosidic bond. |
|
a common disaccharide |
table sugar ~ made of glucose and fructose |
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long chains of repeating units of glucose |
polymers |
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_______________ consist of 10s to 100s of monosaccharides joined through dehydration synthesis |
polysaccharides |
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_________ serves as a way to store energy and cellulose in a structural component of the cell wall |
starch |
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oligosaccharides |
___________ contain 2 - 20 monosaccharides |
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chitin |
___________ is a polymer of 2 sugars repeating many times |
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________ constitute a chemically diverse group of substances that include fats, phospholipids, and sterioids |
lipids |
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_______ are relatively insoluble in water but ate soluble in nonpolar solvents such as ether and benzene |
lipids |
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___________ form part of the structure of cells, especially cell membrains and many can be used for energy |
lipids |
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fats |
contain the 3-carbon alcohol glycerol and one or more fatty acids |
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fatty acid |
consists of a long chain of carbon atoms with associated hydrogen atoms and a carboxyl group at one end of the chain |
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triacylglycerol |
hydrogen rich lipid that release a large amount of energy |
|
saturated fat |
a simple lipid with no double bonds |
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unsaturated fat |
a simple lipid with one or more double bonds in the fatty acid that has lost at least 2 hydrogens |
|
Cis formation of unsaturated fat |
H atom on the same side of the double bond |
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Trans formation of unsaturated fats |
H atoms on opposite sides of the double bonds |
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____________ are found in the cell membrane |
phospholipds |
|
steroids |
a 4-ring structure and quite different than other lipids. They include cholesterol, steroid hormones and vit. D |
|
among the molecules found in living things, _______ have the greatest diversity of structure and function. |
proteins |
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_______ are components of eukaryotic membraine |
steroids |
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________ are the building blocks of proteins |
amino acids |
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_________ have at least one animo group (-NH2) and one acidic carboxyl group (-COOH) |
amino acids |
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each amino acid is distinguishable by the different chemical group called the _________ that is attached to the central carbon.
|
R group |
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Polymers of amino acids are linked by their __________ |
peptide bonds |
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the ____________ structure of protein has a linear sequence of amino acids |
primary |
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the _________ structure of a protein consists of the folding or coiling of the amino acid chains onto itself . EX: alpha helix or pleated sheets |
secondary |
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the _________ structure of the protein produces further bending and folding into globular shapes and fibrous threadlike strands |
tertiary |
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structural proteins |
contributes to the 3-D structure of the cell, cell parts and membranes |
|
enzymes |
are the protein catalysts and increase the rate at which chemical reactions take place within living organisms in the temperature range compatible with life |
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catalyst |
the substance that controls the rate of chemical reaction in cells |
|
A ______________ is one of the structural components, or building blocks, of DNA and RNA |
nucleotide |
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a ___________ consists of 3 parts 1) a nitrogen base 2) a 5-carbon sugar 3)one or more phosphate groups |
nucleotide |
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The nucleotide _______ is the main source of energy in cells because it stores chemical energy in a form cells can use |
ATP |
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Nucleic acids |
__________ consist of long polymers of neucleotides called pollyneucleotides |
|
_____________ contain all the genetic information that determines all the heritable characteristics of a living organism |
nucleic acid |
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the 2 nucleic acids found in living organisms are ________ and _________ |
RNA and DNA |
|
DNA |
stores genetic information, has double strands and is well defined |
|
DNA and RNA |
all cellular organisms have ________ |
|
Viruses have ~ DNA ~RNA ~Neither ~Both |
DNA or RNA |
|
RNA |
carries information from the DNA to the sites where protein is being manufactured in cells |
|
The strands of proteins for in opposite direction in _______ |
DNA |
|
Hydrophillic |
attracted to water
|
|
hydrophobic |
repelled by water |
|
Polysaccharides |
found in plant cell walls, in the human liver, muscles and exoskeletons |
|
what type of bond is found between complementary nucleotides on 2 strands of DNA |
hydrogen bonds |
|
Adenine, Guanine, Cytosine, Thymine, and phosphoric acids are all found in _____ |
DNA |
|
Is ribose found in DNA or RNA |
RNA |
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Is deoxyribose found in DNA or RNA |
DNA |
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Is Uracil found in DNA or RNA |
RNA |
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In __________ thymine is replaced by Uracil |
RNA |
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most bacteria can be seen at ________ |
1-10 macrometers |
|
reflection |
bounces off the sample |
|
transmission |
can go THROUGH the specimin |
|
Absorption |
Is changed by simple direction change |
|
diffraction |
when rays of light are bent |
|
resolution |
the ability to see 2 separate items as separate and discrete units |
|
refraction |
the bending of the light as it passes from one medium to another of different density |
|
what kind of field is good for seeing things like spirokeets or other difficult to see organisms |
dark field |
|
(TEM) or transmission |
go through the sample like a cutting a slice to see the inside |
|
scanning (SEM) |
touches the surface, allowing you to see the surface but not inside |
|
digital microscopy |
allows to build a 3D image , usually a thick sample allowing the computer to break down each layer |
|
simple stain |
uses a single dye to reveal basic cell shape, and cell arrangement |
|
differential stain |
makes use of 2 or more dyes and destinguishes between 2 kinds of organisms or between 2 parts of the organism |
|
Gram stain is a ___________ stain |
differential |
|
acid-fast is a ______ stain |
differential |
|
The color of the gram stain is determined by the cell's ____________ |
envelope |
|
mordant |
a chemical that helps retain the stain in certain cell walls |
|
in a gram stain a gram _______ organism remains purple |
positive |
|
in a gram stain a gram ______ organism show as pink |
negative |
|
in a gram stain, the __________ disolves the membrane and will decolorize the organism that is gram negative |
alchohol |
|
Ziehl-Neelson acid fast stains are used to identify ____________ |
mycrobacterium such as TB |
|
negative staining |
___________ is used when specimen or part of it, such as the capsule, that resists taking up a stain |
|
Prokaryote |
____________ lack a nucleus and other membrane enclosed stuctures |
|
all bacteria are ___________ |
prokaryotic |
|
eukaryotic |
cells that have a nucleus and membrane enclosed structures |
|
all plants, animals, fungi and protists are considered to be __________ |
eukaryotic |
|
______________cells are surrounded by a cell membrane or plasma membrane 1)prokaryotes 2) eukaryotes 3)neither 4) both |
both |
|
where is DNA found in prokaryotic cells? |
in a nuclear region NOT surrounded by a membrane |
|
eukaryotic cells have a variety of ________ which are internal structures that are surrounded by one or more membrane |
organelles |
|
a unique characteristic of bacteria cell walls is the presence of _______________ |
peptidoglycan |
|
is a prokaryote is considered to be a archaea, then it has ___________ cell walls |
pseudomurein |
|
"ancient" bacteria |
archaea |
|
____________are among the smallest organisms |
prokaryotes |
|
Prokaryotes reproduce via ________ |
binary fission |
|
when the DNA is replicated, grows in size, pinched in the middle and then divides, this is considered to be ______________ |
binary fission |
|
Eukaryotes reproduce via ___________ |
mitosis |
|
when a cell divides into 2 daughter cells it is called __________ |
mitiosis |
|
spherical bacteria are called ________ |
coccus |
|
rodlike bacteria are called _________ |
bacillus |
|
bacteria that are connected in chains are called |
strepto |
|
clusters of bacteria are _________ |
staph |
|
the ___________ maintains the characteristic shape of the cell and prevents the cell from bursting with fluids flow into the cell |
cell wall |
|
murin |
another name for peptidoglycan is ___________ |
|
the single most important component of the bacterial cell wall is the ________ that is similar to a chain link fence and can be multiple layers thick as seen in gram-positive cells |
peptidoglycan |
|
________ is found primarily on gram-negative bacteria, is a bilayer membrane that forms the outermost layer of the cell wall and is attached to the peptidoglycan by an almost continuous layer of small lipoprotein molecules |
outer membrane |
|
Glycocalyx |
a "sugar coat" found outside the bacterial cell |
|
endotoxin or LPS |
_________ is an important part of the outer membrane, is an integral part of the cell wall and is not released until the cell wall of bacteria is dead and breaking down. Used to identify gram-negative bacteria |
|
a distinguishing characteristic of many bacteria is the presence of a ______________ between the cell wall and the cell membrane |
periplasmic space |
|
a very active area of the metabolism in the bacteria that contains not only the cell wall peptidoglycan but also many digestive enzymes and transport proteins that destroy potentially harmful substances |
periplasmic space |
|
If peptidoglycan is digested from the cell wall of a gram-positive bacteria, they become _______ or cells with a cell membrane but no cell wall |
protoplasts |
|
In gram-negative, if the cell wall is digested away , they become ________ which have both a cell membrane and most of the outer membrane |
spheroplasts |
|
mycoplasma |
bacteria that belong to the genus _____________ have no cell wall but are protected by the the strengthened cell membrane that contains sterols |
|
bacteria that suddenly lose their ability to form cell walls are called __________, usually caused from either natural ocurance or from chemical treatment |
L-form |
|
the plasma membrane is also known as the ______ |
cell membrane |
|
a living membrane that forms a boundry between the cell and its environment |
cell membrane |
|
the cell wall is made mostly of _______ and ________ |
phospholipids , proteins |
|
the _______ of prokaryotic cells is the semifluid substance inside the cell membrane |
cytoplasm |
|
____________ consist of RNA and protein |
Ribosomes |
|
polyribosomes |
long chains of ribosomes |
|
neatly spherical, stain densly and contain a large and a small subunit |
Ribosomes |
|
__________ serve as a site for protein synthesis |
ribosomes |
|
instead of a nucleus, bacteria have what is called a __________ or ____________ |
nuclear region, nucleiod |
|
the centrally located nuclear region of bacteria consists mostly of __________ |
DNA |
|
photosynthetic bacteria and cyanobacteria contain internal membrane systems called ______________ |
chromatophores |
|
bacteria can have within their cytoplasm a variety of small bodies collectively refered to as __________ that are sometimes called granules and cesicles |
inclusions |
|
granules |
the _______ is not bound by a membrane but it contains glycogen and polyphosphate, which are so densely compacted that they do not easily disolve in cytoplasm. |
|
glycogen |
a glucose polymer used for energy |
|
polyphosphate |
a phosphate polymer that supplies phosphate for a variety of metabolic processes. |
|
__________ are found outside the cell wall, attached to a protein hook, and anchored to the wall and membrane by the basal body |
flagella |
|
__________ is used to prevent phagocytosis, is neatly organized and made of sugar |
capsules |
|
when a flagella moves ____ it forms a bundle and pushes the bacteria in a "run" or forward motion |
counterclockwise |
|
when a flagella moves ___________ the bundle is disassembled, the flagella all come out and the bacteria tumbles randomly |
clockwise |
|
in a _____________ a bacteria will have an equal # of runs and tumbles |
buffer solution |
|
when a bacteria comes into contact with something they like, the flagella will cause it to ___________ |
have longer runs and fewer tumbles |
|
a modification of a flagella found in spirochetes where the rotation causes the cell to move is called ______ |
axial filaments |
|
another name for axial filaments |
endflagella |
|
_________ allows cell membranes to connect and exchange DNA |
"sex pili" |
|
_______ help bacteria adhere to the surface, such as the cell surface, water, and air, and contribute to the pathogenicity of certain bacteria. |
fimbriae and Pili |
|
a _______ is the protective structure outside the cell wall of the organism that secretes it. Only certain types of bacteria have this ability. |
capsule |
|
slime layer |
less tightly bound to the cell wall and is usually thinner than the capsule. this _________ protects the cell from drying out |
|
the ___________ is how the proteins move in and out in diferent directions depending on their function. Phospholopids rotate and move laterally and the membrane is a viscous as olive oil |
fluid mosaic model |
|
the prokaryotic __________ is constantly moving, shifting and very fluid, may be saturated or unsaturated and acts as a barrier that is very selective. |
plasma membrane |
|
osmosis |
the movement of water acorss a selectively permeable membrane from an area of high concentratino to low concentration |
|
osmotic pressure |
the pressure needed to stop the movement of water across the membrane |
|
active transport |
_____ involves energy in the form of ATP. When there is something going against the gradient, energy is used. |
|
movement of material across membranes happens via ________ |
active transport |
|
__________ are environmentally and clinically important because they trigger the the expression of genes that form spores |
endospores |
|
in eukaryotic cells, the _______ contains the carbohydrates, attach to the proteins and steroids ie: cholesterol |
plasma membrane |
|
in the eukaryotic cell, the _______ is full of matrix proteins that determine shape |
cytoplasm |
|
In eukaryotic cells, the ___ hold nucleuic acids |
nucleus |
|
In eukaryotic cells the __________ is the extensive system of membranes that form the tubes and plates of the cytoplasm, can be rough or smooth and contains the enzymes that sythesize lipids (especially those used to make the membrane) |
endoplasmic reticulum |
|
the _______of eukaryotic cells are larger than those found in prokaryotic cells, are ~60% RNA, and !40% protein. They provide sites for protein synthesis and some form chains that attach to the endoplasmic reticulum to make proteins for secretion from the cells. |
endoplasmic reticulum |
|
in eukaryotic cells, the _________ is a stack of flattened membranous sacs, that receives substances transported fromt he endoplasmic reticulum, stores the substances and alters their chemical structure. It also helps to form the plasma membrane and membranes of the lysosomes |
golgi apparatus |
|
in eukaryotic cells, you will find ________ which are extremely small membrane covered organells made by the golgi apperatus in animal cells. destroy invaders, digest and destroy. |
lysosomes |
|
in eukaryotic cells, you will find __________ which are small membrane enclosed organelles filled with enzymes. While they are found in both plants and animal cells, they have different functions. In animals they oxidize amino acids, and in plants the oxidize fats. They convert hydrogen peroxide to water in both plants and animals. |
peroxismomes |
|
In eukarytoic cells you will find ___________ which are membrane enclosed structures that store material such as starch, glycogen, or fat to be used for energy. |
vacuoles |
|
the __________ is a network of protein fibers make of microtubuals and microfiliments that supports and gives rigidity and shape to a cell. they have filiments that can be pulled in or away |
cytoskeleton |
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is a structural polysaccharide that is also commonly found in the exoskeleton of arthropods, give regidity to cell walls to keep them from bursting as water moves in and out. |
chitin |
|
endosymbiotic theory |
at some point the eukariotic cells took in the prokaryotic cell where mutation occures. this was beneficial for both, though now they can not live without one another. |
|
________ moves a substance from the outside of a bacteria cell to the inside while chemically modifying the substance so it can not be defused out. |
group translocation reaction |
|
hypertonic |
a fluid is ________ if it causes the cells to shrivel or shrink as water moves out of them and into the fluid environment |
|
hypotonic |
the fluid is ________ to the cells if the cell swells or bursts as water moves from the environment into the cell. |
|
metabolism |
______is the sum of all the chemical processes carried out by a living organism |
|
anabolism |
the reactions that require energy to synthesize complex molecules from simplier ones is called ____________ |
|
catabolism |
the reaction that releases energy by breaking complex molecules into smaller ones that can then be used as buuilding blocks. |
|
____________ is needed for growth, reproduction, and repair of cellular structures |
anabolism |
|
___________ is needed to provide organisms with energy for its life processes including movement, transport, and the synthesis of anabolism |
catabolism |
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all catabolic reactions involve ______ which allows energy to be captured in high-energy bonds in ATP and similar molecules |
electron transfer |
|
___________ is directly related to oxidation and reduction |
electron transfer |
|
oxidation |
________can be defined as a loss or removal of electrons |
|
reduction |
can be defined as the gain of electrons |
|
autotrphy |
the self-feeding method of capturing energy to obtain carbon |
|
heterotrphy |
the other-feeding method of capturing energy to obtain carbon |
|
photoautotrophs |
obtain energy from light |
|
chemoautotrophs |
obtain energy from oxidizing simple inorganic substances such as sulfides and nitrites |
|
heterotrophs |
get their carbon from ready-made organic molecules which they obtain from other organisms living or dead |
|
photoheterotrophs |
obtain chemical energy from light |
|
chemoheterotrohs |
obtain chemical energy from breaking down ready-made organic compounds |
|
____________ metabolism is important as means of energy capture in many free-living organisms, such as microorganisms that do not cause diease |
autotrophic |
|
nearly all microorganisms, including nearly all those that cause infections are ___________ |
chemoheterotrophs |
|
fermentation, glycolysis, and aerobic respiration are all methods used in _______ |
chemoheterotrophs |
|
glycolysis and fermentation do not require _____ and only use a small amount of energy of the energy in glucose molecule is captured in the ATP |
oxygen |
|
_________ respiration requires oxygen as an electron acceptor and captures a reletively large amount of the energy in a glucose molecule in ATP |
aerobic |
|
all organic molecules are considered to be |
heterotrphs |
|
_______ pathways capture energy in a form cells can use |
catabolic |
|
__________ pathways make the complex molecules that form the structure of cells, enzymes, and other molecules that control cells |
anabolic |
|
bacteria transfers 40% of the energy in a glucose molecule to ATP during __________ metabolism. are organismsthat do not use oxygen; they include some that arekilled by exposure to oxygen |
aerobic |
|
energy released in a __________ reaction is captured, stored, in the form of ATP molecules which later get broken down to form energy needed to build up new molecules in biosynthetic pathways |
catabolic |
|
the energy required to start a reaction is called ______ and can be thought of a hurdle a molecule must be raised to get a reaction started |
activation energy |
|
each enzyme has a location on its surface called the _________ which is a binding site, that provides a surface on which reactions take place |
active site |
|
the substance in which an enzyme acts |
the substrate |
|
intracellular enzymes that act within the cell that produced them are _____ |
endoenzymes |
|
extracellular enzymes that are synthesized on a cell but cross the cell membrane to act in the peroplasmic space or in the cell's immediate environment are _________ |
exoenzymes |
|
many enzymes can catalize a reaction only if a substance called _______________ is present. |
coenzyme or cofactor |
|
a __________ is a nonprotein organi molecule bound to or loosely associated with an enzyme and are synthesized to form vitamins |
coenzyme |
|
a _________ is usually an inorganic ion such as magnesium, zinc, or mnganese, that improve the fit of an enzyme with its substrate and their presence can be essential in allowing a reaction to proceed |
cofactor |
|
A molecule similar in structure to a substrate cansometimes bind to an enzyme’sactive site even though the moleculeis unable to react. Thisnonsubstrate molecule is said toact as a_______ofthe reaction because it competeswith the substrate for the activesite |
competitive inhibitor |
|
the __________binds to an active site, itprevents the substrate frombinding and thereby inhibits thereaction. |
competitive inhibitor |
|
Enzymes also can be inhibited by substances called which distort the tertiary protein structure and alterthe shape of the active site. Any enzyme molecule thusaffected no longer can bind substrate, so it cannot catalyzea reaction. |
noncompetitive inhibitors |
|
Feedback inhibition |
________ is a kind of reversible noncompetitiveinhibition, regulates the rate of many metabolicpathways. For example, when an end product of apathway accumulates, the product often binds to and inactivatesthe enzyme that catalyzes the first reaction inthe pathway. |
|
Like other proteins,_____________ are affected by heat andby extremes of pH. Even small pH changes can alterthe electrical charge on various chemical groups thereby altering the abilityto bind its substrate and catalyze a reaction. |
enzymes |
|
Enzymes can catalyze a reaction to go in eitherdirection: AB ? A 1 B or A 1 B ? AB. The concentrationsof substrates and products are among severalfactors that determine the direction of a reaction. A highconcentration of_____drives the reaction toward formationof A and B. |
AB |
|
When neither AB nor A and B are removed fromthe system, the reaction will ultimately reach a steadystate known as _________ where nonet change in the concentrations of AB, A, or B occurs. |
chemical equilibrium |
|
The _________ of enzyme available usually controls therate of a metabolic reaction |
quantity |
|
The reaction rate __________ with the number ofenzyme molecules and reaches a maximum when allavailable enzyme molecules are working at full capacity. |
increases |
|
________is the metabolic pathway used bymost autotrophic and heterotrophic organisms, bothaerobes and anaerobes, to begin to break down glucose |
Glycolysis |
|
________ does not require oxygen, but it can occurin either the presence or absence of oxygen |
glycolysis |
|
_________is the additionof a phosphate group to a molecule, often from ATP.This addition generally increases the molecule’s energy.Thus, phosphate groups commonly serve as energy carriersin biochemical reactions. |
Phosphorylation |
|
After phosphorylation,__________ is broken into twothree-carbon molecules, and each molecule is oxidizedas two electrons are transferred from it to NAD. |
glucose |
|
Energy is captured in ATP at the ________ level, that is, in the direct course of glycolysis—in two separatereactions late in the process. |
substrate |
|
Because energyfrom two ATPs was used in the initial phosphorylations,glycolysis results in a net energy capture ofonly ____ ATPs per glucose molecule. |
two |
|
One process bywhich pyruvic acid is subsequentlymetabolized in the absenceof oxygen is_______ |
fermentation |
|
_________ is the result of theneed to recycle the limitedamount of NAD by passing theelectrons of reduced NAD off toother molecules. It occurs bymany different pathways |
fermentation |
|
The simplest pathway for pyruvic acid metabolism is ___________in which only (homo-) lacticacid is made. Pyruvic acid is converteddirectly to lactic acid, using electrons from reducedNAD. Unlike other fermentations, this type produces nogas. It occurs in some types of the bacteria called lactobacilli,in streptococci, and in mammalian muscle cells. |
homolactic acid fermentation, |
|
In ________ carbon dioxideis released from pyruvic acid to form the intermediateacetaldehyde, which is quickly reduced to ethyl alcoholby electrons from reduced NAD., although rare in bacteria, is common in yeasts andis used in making bread and wine |
alcoholic fermentation |
|
Although aerobes obtain some of their energyfrom glycolysis, they use glycolysis chiefly as a preludeto a much more productive process, one that allowsthem to obtain far more of the energy potentially availablein glucose. This process is _________ |
aerobic respiration |
|
the __________ metabolizes two-carbon units called acetyl groups to CO2 and H2O. It also is called the tricarboxylic acid(TCA) cycle, because some molecules in the cycle havethree carboxyl (COOH) groups, or the citric acid cycle,because citric acid is an important intermediate |
Krebs cycle |
|
Before pyruvic acid (the product of glycolysis) canenter the Krebs cycle, it must first be converted to __________ This complex reaction involves the removalof one molecule of CO2, transfer of electrons to NAD,and addition of coenzyme A |
acetyl-CoA. |
|
_______ is a sequence of reactions in whichacetyl groups are oxidized to carbon dioxide. Hydrogenatoms are also removed, and their electrons are transferredto coenzymes that serve as electron carriers. Each reaction is controlled by a specific enzyme, and themolecules are passed from one enzyme to the next as theygo through the cycle |
Krebs cycle |
|
___________ the process leading to the transferof electrons from substrate to O2, begins during oneof the energy-releasing dehydrogenation reactions ofcatabolism. |
Electron transport, |
|
the _________, which is often called the respiratory chain, |
electron transportchain |
|
ADP is converted to ATP by alarge ATP-synthesizing complex called ATP synthase(or ATPase) in a process known as_______.This process is the result of a seriesof chemical reactions that occur in and around a membrane. |
chemiosmosis |
|
___________performs two basicfunctions: (1) accepting electrons from an electron donorand transferring them to an electron acceptor, and(2) conserving for ATP synthesis some of the energy releasedduring the electron transfer. |
electron transport chain |
|
The large amountsof energy obtained from aerobic respiration result from the transfer of electrons through the electron transportchain, from a level of_________energy to one of_________ energy with the formation of ATP. |
high, low |
|
Energy is capturedin high-energy bonds as Pi combines with ADP toform ATP. This process is known as________________ |
oxidative phosphorylation |
|
Inaerobic respiration,__________ is the final electron acceptorand becomes reduced to water |
oxygen |
|
From the metabolism of a single glucose molecule, ______pairs of electrons are transported by NAD |
10 (2 pairsfrom glycolysis, 2 pairs from the pyruvic acid to acetylCoAconversion, and 6 pairs from the Krebs cycle) |
|
Electrons entering at FADstart partway down the chain and contribute onlyenough energy to make two ATPs. Thus, during aerobicmetabolism of a glucose molecule, the 10 pairs of electronsfrom NAD produce 30 ATPs, and 2 pairs fromFAD produce 4 ATPs, for a total of 34 ATPs. Includingthe 2 ATP molecules from glycolysis and the 2 GTPmolecules (52 ATPs) from the Krebs cycle gives a totalyield of 38 ATPs per glucose molecule. |
|
|
Oxidative phosphorylation, when compared withfermentation, generates the _________amount of energyfrom glucose. |
greater |
|
The net gain of ATP molecules from fermentationis ______ |
2 |
|
Electrons for the hydrogen atoms removed from the reactionsof the Krebs cycle are transferred through theelectron transport system, which generates the highenergybonds of ATP. ADP is converted to ATP by alarge ATP-synthesizing complex called _________ |
d ATP synthase(or ATPase) |
|
Chemiosmosis occurs in the __________ of prokaryotes |
cell membrane |
|
Chemiosmosis occurs in the __________ of eukaryotes |
mitochondrial membrane |
|
Some bacteria use only parts of the Krebs cycle and theelectron transport chain. They do notuse free O2 as their final electron acceptor.Instead, in aprocess called _________they use inorganicoxygen-containing molecules such as nitrate (NO23 ), nitrite(NO22 ), and sulfate (SO2 24 ) |
anaerobic respiration |
|
Becauseanaerobes use less of the metabolic pathways, they produce _______ATP molecules than do aerobic organisms. |
fewer |
|
___________ breaks down the glucoseand pentose and produces NADPH (reduced) and nucleic acid precursors |
pentose phoshphate pathway |
|
____ produces NADPH (reduced) and ATP, does not involve glycoysis |
enter-Doudoroff pathway |
|
_______ re-oxidizes NADH (reduced) to allow NAD+ (oxidized) usage in glycolisis |
fermentation |
|
In the ____________ light strikesthe green pigment chlorophyll a in thylakoids of chloroplasts. Electrons in the chlorophyllbecome excited—that is, raised to a higher energy level.These electrons participate in generating ATP in cyclicphotophosphorylation and in noncyclic photoreduction |
light-dependent (light) reactions |
|
in _________excitedelectrons from chlorophyll are passed down an electrontransport chain. As they are transferred, energy is capturedin ATP by chemiosmosis . When theelectrons return to the chlorophyll, they can be excitedover and over again, so the process is said to be cyclic |
cyclic photophosphorylation |
|
In ___________ or carbonfixation, occur in the stroma of chloroplasts. Carbon dioxideis reduced by electrons from NADPH in a processknown as the Calvin-Benson cycle. Energy from ATP and electrons from NADPH arerequired in this synthetic process. Various carbohydrates,chiefly glucose, are the products of this reaction s |
light-independent (dark) reactions |
|
_______is typically a circular (in prokaryotes)or linear (in eukaryotes), threadlike molecule ofDNA |
chromosome |
|
Genes with different informationat the same locus are called __________ |
alleles |
|
___________ is a permanent alterationin DNA. usually change the sequenceof nucleotides in DNA and thereby change theinformation in the DNA. |
mutations |
|
All the information for the structure and functioning ofa cell is stored in _______ |
DNA |
|
DNA makes new DNA |
replication |
|
DNA makes RNA as the first stepin protein synthesis.In the overall process of protein synthesis, thesynthesis of mRNA from a DNA template is called_________ |
transcription |
|
RNA links amino acids together toform proteins. The synthesis of protein from informationin mRNA is called |
translation |
|
In protein synthesis, the new polymer is a particular typeof RNA called __________ which thenserves as a second template that dictates the arrangementof amino acids in a protein. Some proteins form the structureof a cell, others (enzymes) regulate its metabolism,and still others transport substances across a membrane |
mRNA |
|
In ___________ aprocess whereby RNA can make DNA. This DNA canthen make more RNA. Such viruses are known as retrovirusesbecause of this reverse process.
|
reverse transcription |
|
________is a less accurate process than regular transcription. Uncorrectederrors are passed on as mutations, or permanentchanges in the genes of an organism. |
reverse transcription |
|
_________ the points at which the two strands of DNAseparate to allow replication of DNA |
replicationforks |
|
Molecules of the enzyme _________ movealong behind each replication fork, synthesizing newDNA strands complementary to the original ones at aspeed of approximately 1,000 nucleotides per second and also growing strand,correcting errors such as mismatched bases. |
DNA polymerase |
|
The enzyme DNA polymerase can add nucleotidesonly to the _____end of a growing DNA strand. |
3" |
|
s atemplate for the synthesis of a continuous new strand that going in the 50 to 30 direction. |
leading strand |
|
runs in the 30 to 50 direction, thesynthesis of new DNA, the ______________ must be discontinuous;that is, the polymerase must continuallyjump ahead and work backward, making a series ofshort DNA segments called Okazaki fragments. |
lagging strand |
|
DNA polymerase will digest the RNAprimer and replace it with DNA. The fragments are thenjoined together by another enzyme called a _______ |
ligase |
|
After separatingthe DNA strands, the enzyme __________binds toone strand of exposed DNA recognizing a sequence ofnucleotide bases in the DNA that indicates this is the startof a gene (promoter sequence) |
RNA polymerase |
|
In prokaryotes, transcription and translation bothtake place in the _________ |
cytoplasm |
|
in eukaryotes, transcriptiontakes place in the __________ |
cell nucleus |
|
___________binds closely to certainproteins to form two kinds of ribosome subunits. A subunitof each kind combines to form a ribosome. They serve as binding sites fortransfer RNA, and some of their proteins act as enzymesthat control protein synthesis |
Ribosomal RNA (rRNA) |
|
_______ is synthesized in unitsthat contain sufficient information to direct the synthesisof one or more polypeptide chains. |
Messenger RNA (mRNA) |
|
The first codon in a molecule of mRNA acts as a ________and always codes for the amino acid methionine,even though the methionine may be removed fromthe protein later |
start codon |
|
The last codon to be translated in amolecule of mRNA is a ___________ and acts as a kind of punctuation mark to indicate the end ofa protein molecule |
terminator (stop codon) |
|
codons thatcode for an amino acid are called______ |
sense codons |
|
Although geneticinformation is stored in DNA, the genetic code is writtenin codons of _____ |
mRNA |
|
The function of _________ is to transfer amino acids fromthe cytoplasm to the ribosomes for placementin a protein molecule |
transfer RNA(tRNA) |
|
Each tRNA has athree-base __________ that is complementaryto a particular mRNA codon. It also has a bindingsite for an amino acid—the particular amino acidspecified by the mRNA codon |
anticodon |
|
Found in the cytoplasm, where they pick upamino acids and transfer them to mRNA |
transfer RNA |
|
___________ is an important process in bacterial growth,uses 80 to 90% of a bacterial cell’s energy. |
Protein synthesis, |
|
Thelocation on the ribosome where the first tRNA pairs iscalled the ______ |
P site |
|
The second codon of the mRNA thenpairs with a tRNA that transports the second amino acidto the ____ |
A site |
|
__________shuttle back and forthpicking up amino acids in the cytoplasm, and bringing themto the ribosome, where the amino acids are incorporatedinto protein. |
tRNAs |
|
In __________ enzyme activity is regulateddirectly, and the control mechanism determines how rapidlyenzymes already present will catalyze reactions. |
feedback inhibition |
|
In _____________ regulation occursindirectly by enzyme synthesis, and the control mechanismdetermines which enzymes will be synthesized andin what amounts. |
enzyme induction and enzyme repression |
|
In feedback inhibition, also called________the end product of a biosynthetic pathway directlyinhibits the first enzyme in the pathway. |
end-product inhibition |
|
At one point in the investigation of metabolic regulation,it was discovered that certain organisms alwayscontain active enzymes for glucose metabolism evenwhen glucose is not present in the medium. Such enzymesare called ___________ |
constitutive enzymes |
|
When lactose is present,however, the cells synthesize the enzymes needed forits metabolism. This phenomenon is __________ controls the breakdownof nutrients as they become available in the growthmedium. Such a system is turned on when a nutrient isavailable and turned off when it is depleted |
enzyme induction |
|
______, a model that explainsthe regulation of some protein synthesis in bacteria |
operon (op0er-on) theory, |
|
_______ is a sequenceof closely associated genes that regulate enzyme production. |
operon |
|
An operon includes one or more ___________ which carry information for the synthesis of specific proteinssuch as enzyme molecules |
structural genes |
|
__________ control the expression of the structural genes. |
regulatory site |
|
___works in conjunction with the operonbut may be located some distance from it |
regulator (i) gene |
|
_____ is a protein that binds to theoperator and prevents transcription of the adjacent Z, Y,and A genes. Consequently, the enzymes that metabolizelactose are not synthesized. |
repressor |
|
When present in the medium, lactose acts as the _________ by binding to and inactivating the lac repressor.TheRNA polymerase then binds to the promoter, causingthe operator to initiate transcription of the Z, Y, and Agenes as a single long strand of mRNA. |
inducer |
|
_______ breaks downlactose into glucose and galactose |
b-galactosidase |
|
______typically regulatesanabolism. It controls processes in which substancesneeded for growth are synthesized. Synthesis of theamino acid tryptophan, for example |
enzyme repression |
|
_________ allows transcriptionof the trp operon to begin but terminates it prematurelyby a complex process when sufficient amounts oftryptophan are already present in the cell. |
attenuation, |
|
the lac operon that we describedpreviously is repressed when glucose is presentin adequate quantities, an effect known as _________ In this way the cell saves energy by not makingenzymes it doesn’t need |
catabolite repression |
|
__________ refers to the genetic informationcontained in the DNA of the organism |
Genotype |
|
_______refers to the specific characteristics displayed by the organism. |
Phenotype |
|
Mutations always change the_______ |
genotype. |
|
________ is a mutation that affect a single base. is a base substitution, or nucleotidereplacement, in which one base is substituted foranother at a specific location in a gene. The mutationchanges a single codon in mRNA, and it may or may notchange the amino acid sequence in a protein. |
point mutations, |
|
__________is a mutation that can affect more than one base in DNA. n is a mutation in which there isa deletion or an insertion of one or more bases. Such mutations alter all the three-base sequencesbeyond the deletion or insertion. When mRNA transcribedfrom such altered DNA is used to synthesize aprotein, many amino acids in the sequence may be altered. |
frameshift mutations |
|
bacteria that have lost the ability to synthesizea particular enzyme have played an importantrole in our understanding of metabolic pathways. Suchnutritionally deficient mutants are called _______they require special substances in their medium to maintaingrowth. |
auxotrophs |
|
normal, nonmutantforms are called _______ orwild types. |
prototrophs |
|
__________ occurin the absence of any agent known tocause changes in DNA. They ariseduring the replication of DNA and appearto be due to errors in the basepairing of nucleotides in the old andnew strands of DNA. |
Spontaneous mutations |
|
________ are produced by agents called mutagens,which increase the mutation rate above the spontaneousmutation rate. Mutagens include chemical agentsand radiation |
Induced mutations |
|
_________ is a is a molecule quite similar in structureto one of the nitrogenous bases normally found in DNA. |
base analog |
|
__________ are are substances that add alkylgroups (such as a methyl group, —CH3) to other molecules. Such a change can give rise to a point mutation. |
Alkylating agents |
|
_____________ such as nitrous acid (HNO2)remove an amino group (—NH2) from a nitrogenous base. Removing an amino group from adenine causes itto resemble guanine |
Deaminating agents |
|
__________ cause frameshift mutations.. This moleculeor one of its derivatives can become inserted in the DNAdouble helix, displacing both members of a base pair.Such a modification distorts the helix and causes partialunwinding of the DNA strands. |
, acridine derivatives |
|
_________occurs in the presenceof visible light in bacteria previously exposed toultraviolet light. When organisms containing dimers arekept in visible light, the light activates an enzyme thatbreaks the bonds between the pyrimidines of a dimer |
photoreactivation |
|
________ occurs in some bacteria, and cantake place in the presence or absence of light, requiresseveral enzyme-controlled reactions |
Dark repair |