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552 Cards in this Set

  • Front
  • Back
what existed before the big bang
energy
what did we exist as originally
only hydrogen and some helium
6 elements essential for life
sulfur, phosphorus, oxygen, nitrogen, carbon, hydrogen
what created heavier elements necessary for life
1 round of star formation and supernova explosions nuclear fusion
what mustve happened before life formed
meteorite bombardment
is there a gap between when life could've existed and when it actually did
yes
what occurs at the center of the archaea bacteria and eukaryote circle
core cell functionality is established
what came to be before eukaryotes existed and after the oldest fossils, why
photosynthetic bacteria, to oxygenate the environment
what was developed in the early phase of the timeline
protein motifs
when does gene regulation begin
eukaryotes to hominids
origin of life
"RNA world metabolism world and extraterrestrial source"
explain RNA world as origin of life
thought ribozymes were the 1st form of life but the problem is that its hard to make RNA
explain metabolism world as the origin of life
metabolism provided environment where precursors & RNA form. the problem is how could this system evolve
protocells
"first cells defines intracellular/extracellular space darwinian evolution"
physical constraints on protocells
Ca concentration
permeability of lipid bilayer
what kind of permeability did the first cell have
it had a very leaky membrane
what does more impermeable mean about the # of transporters
more impermeable= more transporters
how do u modify a solute so that it cant cross the membrane so easily
add a hydrophilic group
how was the Ca+2 concentration in the first cells
low Ca+2 concentration
what effect do calcium ions have
"-cause aggregation of nucleic acids and proteins disrupt membrane structure"
when were the cellular physiological properties established
before the 1st common ancestor
common thread among all cells
high internal K+ ion concentration
what percent of total body weight is water
75%
what percent of total number of molecules is water
99%
is pure water conductive
NO
characteristics of water molecule
"polar molecule polar covalent bonds, electronegativity, dipole
what causes surface tension
strong interactions between water molecules
what kind of bonding occurs between water molecules
hydrogen bonding
is water a good solvent? why or why not
yes, its polar
what is water a good solvent for
acids, bases, salts
what forms when NaCl+water
solution of Na and Cl ions (hydration shell)
what purpose does the cell membrane serve for charged molecules
barrier to diffusion of charged molecules
what makes up cell membrane
"phospholipids lipid bilayer"
parts of phospholipid
"polar-hydrophilic-interacts with water
amphipathic
mixed chemical properties in the same molecules
structure of lipid bilayer
"-The hydrophobic tails point in towards the center of the bilayer
describe hydrophobic core of the lipid bilayer
thin layer of oil
another name for cell membrane and why
fluid mosaic model- integral membrane proteins 
membrane thickness
60A (6nm)= thin
hydrophobic core thickness
30A (3nm)= thin
what is the membrane structural integrity determined by
cytoskeleton
what proteins are embedded in the cell membrane
"-peripheral membrane proteins cytoskeletal glycoproteins"
most common integral membrane proteins
glycoproteins (sugar group on protein)
protease
enzyme that breaks down protein
what kind of molecules diffuse through the lipid bilayer
hydrophobic molecules
examples of solute that can dissolve into lipid membrane
oxygen, CO2, fatty acids, steroid hormones
are pumps efficient
NO
how do polar and charged molecules cross the cell membrane
membrane proteins
pumps
require energy in the form of ATP to move ions up concentration gradients
ion channels
facilitate diffusion of ions by creating pores in the cell membrane
transporters
don't directly require metabolic energy
name membrane pumps
"Na K-ATPase Ca-ATPase H-ATPase H K-ATPase"
why do cells have high Na+ outside the cell
cuz we all came from marine environment so extracellular fluid mimics that 
Na K-ATPase
pumps 3 Na+ out and 2 K+ in
what occurs when ATPase phosphorylates proteins
a conformational change which moves the binding site from inside to the outside
another name for Na K-ATPase or Na K pump and why
electrogenic pump cuz there's constant current flowing out of the cell
intracellular and extracellular concentration of K+
125 5
intracellular and extracellular concentration of Na+
12 120
intracellular and extracellular concentration of Cl-
5 125
intracellular and extracellular concentration of Ca+2
1E-4 2
intracellular and extracellular concentration of A-
108 0
what is A-
fixed anions sum of all the proteins amino acid inorganic ions nucleotides DNA RNA that are located inside the cell
job of H-ATPase
maintains intracellular pH (H+ ion concentration)
job of H
K-ATPase
job of Ca-ATPase
get Ca out of the cell
what is the main way the cell stores energy
ATP
ion gradients as sources of cellular energy
"-sources of chemical energy (secondary active transport) sources of electrical energy (membrane potential)"
type of movement of transporters
"-facilitated diffusion secondary active transport"
direction of diffusion and facilitated diffusion
high concentration to low concentration
direction of active transport
low concentration to high concentration
what does passive glucose transporter
do moves glucose from blood stream to cells
can glucose just cross the membrane? why or why not
NO because its polar
Na-glucose symporter structure
2 binding sites- 1 for Na and 1 for glucose and they both bind and cross the membrane. Net overall movement is Na & glucose into the cell
what kind of transport is Na-glucose symporter
secondary active transport
cotransport
both ions move in the same direction
counter-transport
ions move in opposite directions
where can Ca ATPase pump Ca+2 into
mitochondria ER cytoplasmic reticulum
what can Ca+2 ions function as
second messengers; they modulate the function of a large number of different proteins neurotransmitter release muscle contraction
what makes Ca+2 a great second messenger
a brief increase in Ca+2
what does prolonged inc in Ca+2 concentration trigger
cell death; blockade of blood flow
what does decreases O2 lead to
decreased ATP
what is the primary determinant of changes in cell volume
the flow of water into or out of the cell across the cell membrane
aquaporins
water channels
osmolarity
a measure of the concentration of osmotically active particles in a solution
how is osmolarity expressed
osmoles of solute per liter of solution
what is the osmolarity for molecules such as glucose;sucrose; and urea
1molar 1 osmole/liter solution
what is the osmolarity of a 1M NaCl solution
2 osmole/1 solution
what is the osmolarity of extracellular solution kept in
275-295 mosmole/l
concentration of H2O molecules in pure water
55.5M
concentration of H2O molecules in a 1M glucose solution
54.5 M
what do water molecules flow down their concentration gradient like
membrane permeable solutes
is the cell sensitive to osmolarity
YES
what do aquaporin channels allow for
water to flow down conc gradient
what are electrochemical phenomenon
brain and muscle function
voltages in cells are generally less than what
100mV
what range are currents in
nA (nanoamps)
main mediator of small currents
ion channels
ion permeation
how ions move through channels
ion selectivity
how we distinguish the different sorts of channels from eachother
which has greater ion selectivity K or Na
K;by 1:10
K+ ion radius
1.33 A
Na+ ion radius
.95A
throughput
how many ions flowing through every second
throughput of K+
10^8/second
K channel structure
2 membrane spanning domains (amino and carboxy terminal) and they assemble as a tetramer.
is the K channel narrow or wide
narrow
selectivity filter
string of amino acids in a straight line parallel to the pore
2 components of space-filling model of K channel
rigid pores and flexible sparse region (opens
how do ions get across cell membranes
maintain inner hydration shell and can go 75% through water
TVGYG
selectivity filter
solid NaCl + water gives you what
solution of sodium and chloride ions (hydration shell)
what's the molecular mimic of water
oxygen atoms
what does a longer channel signify about the selectivity
longer channel=increased selectivity
is the pore fixed
YES
what does increased energy barrier signify about ion flow
increased energy barrier= decreased flow of ions
what direction is net flux always through
the channel
how do K+ ions move in and out of the channel without encountering any large energy barriers
cuz the 4-fold symmetry of the channel mimics the normal inner hydration shell of the ion
how do ions move through the pore
due to the constant flipping between 2 stable channel states
why is it energetically less favorable for Na to come into the pore
Na can't pop along 4 side (to fit between O)
what effect will a change in aa have
a change on pore function
what is electrical flow produced by
movement of ions (diffusion)
what are the primary electrical current carriers in the body
dissociated ions
electrolytes
"cations-pos charge and anions-neg charge"
direction of electrical current in aqueous solution
positive to negative
anode
positive
cathode
negative
what is a bulk solution with ions compared to
a resistor
ohm's law
V=IR
resting membrane potential
-60 to -90 mV
what is the intracellular potential relative to extracellular
negative
what provides a source of energy that can be converted to electrical potential energy
the non-equilibrium distribution of ions
2 structural components that are necessary for the conversion to electrical potential energy
"1.ion-impermeant lipid bilayer which can produce a separation of charge
what types of charges are highly reactive
unshielded charges
cell membrane
thin nonconducting sheet separating 2 conducting surfaces (intracellular and extracellular)
what makes a better capacitor
the thinner it is
principle of electroneutrality
states that the sum of negative charges in solution must equal the sum of positive charges
chemical potential difference
concentration gradient
electrical potential difference
charged ion will be affected by electric field
electrochemical equilibrium
combine electrical & chemical potential difference
Nernst equation
Ei= 61.5/Z log ([C]o/[C]i) mV
Ei
equilibrium potential for ion i
Z
valence of the ion (+1 for Na & K
[C]o
ion concentration outside the cell
[C]i
ion concentration inside the cell
what temperature does the nernst equation apply to
37 degrees
log (1/10)
-1
log (1)
0
log (10)
1
log (100)
2
equilibrium potential for K+ ions
-61.5 mV
another name for nernst potential
equilibrium potential
what is the equilibrium potential
electrical driving force=chemical driving force
E_Cl
-86mV
E_K
-86mV
E_Na
61.5mV
what is Vm (membrane potential) typically
-70mV
what is used to maintain gradients
Na
what is the equilibrium potential drawn towards
Na potential
what does the Goldman Equation tell us
the relationship between Vm
Goldman Equation
Vm=61.5 log([K+]o+b[Na+]o/[K+]i+b[Na+]i) mV
what is b in the goldman equation
permeability of Na/K= .02
2 factors that determine Vm membrane potential
"ion concentrations- determine the equilibrium potentials for each ion
what does depolarization do to the cell
makes it more positive
what does hyperpolarization do to the cell
make it less positive
when do u have zero net flux
when the membrane potential=equilibrium potential of the membrane
for a typical cell are most ions at equilibrium
NO
what can ion flow across membranes be modeled as
an equivalent electrical circuit
what do ion channels function like
resistors
membrane conductance
sum of all the ion channels in the membrane that are open at the time of the measurement
membrane capacitance
within a limited voltage range;the lipid bilayer functions like a pure capacitive element
membrane battery
the non-equilibrium ion distribution acts like a barrier providing electrical potential energy for the movement of ions (charge)
what kind of force does the membrane batter produce
electromotive force
what is membrane conductance due to
the presence of ion channel proteins
do artificial lipid bilayers have high or low conductance
extremely low conductance
what is the reciprocal of conductance
resistance
what is the formula relating conductance and ohms
"Ohms=1/Siemmens
what is the formula relating I
g
driving force
the voltage that acts on an ion
driving force for K+ ions
"Vm-E_K membrane potential-equilibrium potential"
driving force for Na+ ions
Vm-E_Na
Ohm's Law including K+ driving force
I_K=g_k(Vm-E_K)
Ohm's law including Na+ driving force
I_Na=g_Na(Vm-E_Na)
what occurs when there's more open channels
more ions flow out of the cell and run down gradients
what is attached to S4
many positive residues
what responds to gradients
charges
S4
"voltage sensor- positively charged residues sense membrane potential
S4-S5 linker helix
connects the 2 domains
what occurs when the membrane depolarizes
the channel opens
how many times did voltage sensitive channel evolve
just once
how many domains have the same evolutionary origin
4
what are kinetic states of voltage-gated channels dependant on
rate constants
what are the kinetic states of voltage gated channels
"1.closed- doesn't pass ions 2.open-passes ions 3.inactivated- doesn't pass ions"
what happens when u leave a channel open for a while
it becomes inactivated
is the recovery rate fast or slow
slow
what is slower activation rate or inactivation rate
inactivation rate
what allows the channel to be closed
a protein blocks the channel
what does the amino terminus correspond to
the protein that physically blocks the channel (responsible for inactivation)
what is the inactivation particle
string of amino acids
action potential
transient voltage change produced by varying ion conductances
what is the AP produced by
K and Na channels
what does the nervous system do
rapidly transmits info. from one end of the animal to the other end.
what does the AP allow for
for info. to quickly move from one end of the animal to the other end.
what does the cell function as
RC circuit
what functions as a capacitor in the cell
lipid bilayer
what functions as the resistor
ion channels
what are the 2 currents and order
current first flows to capacitor then resistor
what is the peak of the voltage determined by
ohm's law
why is there a lack of instant change in response to current
cuz current is flowing through the capacitor. only get instant change when current flows through resistor
what type of relationship exists between the stimulating current and response
proportional
what kind of relationship exists between the threshold stimulus and response
nonlinear- trigger an AP (large response)
characteristics of AP
"1.triggered by depolarization 2.threshold voltage level must be reached in order to trigger an AP 3.all-or-non events 4.membrane potential at peak of AP is positive (overshoot) 5.refractory period (where AP doesn't work well)"
another term for passive responses
sub-threshold responses
what kind of responses do sub-threshold currents produce
linear membrane responses
what kind of response do suprathreshold depolarizing current initiate
AP
what is the threshold potential typically
-50 to -40 mV
All or non phenomenon
doesnt matter how strong the stimulus is, once u trigger the threshold, u get an AP
relationship between height and duration of the AP and the nature of the stimulus
height and duration of AP are fixed & independent of the nature of the stimulus
relationship between amplitude and strength of supra-threshold stimulus
amplitude is independent of strength of supra-threshold stimulus
what does refractory period limit
how rapidly u can pump information
what do changes in relative permeabilities induce
action potential
what happens to conductance during AP
it increases
what kind of current do u get as Na channels open
more inward current
what turns on faster Na or K conductance
K conductance
which channel has faster kinetics K or Na
Na channel has faster kinetics
positive feedback relation
opening of voltage-gated Na+channels in membrane->incr. membrane Na+ permeability->inc. flow of Na+ into cell->increased membrane potential (depolarization)
why does the upstroke terminate
cuz channels inactivate and u have used up all the channels
what is the rapid termination of the AP due to
"-inactivation of the Na+ conductance, activation of K+ conductance"
what conductance is bigger K or Na
K conductance is bigger
what is the result of a larger K conductance
membrane potential becomes negative=hyperpolarization
what is hyperpolarization due to
the sustained increase in the K+ conductance following the action potential
absolute refractory period
inactivation of a majority of Na+ channels. doesn't matter how big a current, there'll be no AP
relative refractory period
increased K+ conductance and Na+ channel inactivation. stick a big enough of a current in, get AP
function of proteins in the cell membrane
to facilitate the movement of ions and polar molecules across the membrane.
where are peripheral membrane proteins located
on the inner surface of the cell membrane
what are transmembrane proteins and what are they typically known as
those that cross the cell membrane to the extracellular surface, typically known as glycoproteins
proteins that facilitate the movement of polar or charged molecules across the cell membrane
pumps, ion channels, transporters
how do membrane pumps function
"by translocating an ion binding
surface from inside the cell to outside the cell and then a modified surface from outside back to the inside of the cell."
what is the movement of the ion binding surface provided by
by a conformational change in the shape of the protein
what is the conformational change in protein provided by
hydrolysis of ATP to ADP
what is the kinase function of the pump used for
to phosphorylate the pump protein, which then induces the first conformational change 
describe the flow of anions and cations
cations (+) move towards the cathode (-), anions (-) move towards the anode (+)
describe the hydration shell formed with Na and Cl ions
Na (+) interacts with O (-) and Cl (-) interacts with H (+)
describe ion selectivity
There are channels that only let K+ ions to pass and channels that only let Na+ ions to pass.
what ions is the cell membrane predominantly permeable to at rest
K+ ions
property of capacitance
the thin lipid bilayer has the ability to separate electric charges
what is a chemical potential difference due to
concentration gradient
what is an electrical potential difference due to
separation of charge
equilibrium potential
"the membrane potential at which the electrical and chemical potentials for a given ion are equal and opposite"
what does the Goldman equation provide
means to calculate the membrane potential when more than one ion is permeable.
example of facilitated diffusion
passive glucose transporter (moves glucose from blood stream into cells)
why are secondary active transporters called secondary
"because they use chemical energy stored in the form of an ion gradient rather than directly use ATP"
example of secondary active transport
Na+/glucose transporter
what is the Na+/glucose transporter used for
to actively transport glucose out of the intestines and into the blood stream and also out of the kidney tubules and back into the blood.
what does the LacY transporter do
"it mediates the coupled cotransport of lactose and protons (H+) down a proton gradient."
how are K channels assembled as
tetramers- they're assembled from 4 protein subunits
what are channels gated by
stimuli like changes in membrane voltage, changes in intracellular Ca2+ or H+ ion concentrations, binding of proteins known as G-proteins to the channel and covalent modification of the channel by phosphorylation.
sub-cellular compartments of a neuron
"-cell body (soma)
-dendrites (dendritic tree) initial segment (axon hillock) axon nerve terminal"
what is the direction of flow of electrical info. through a neuron presynaptic
nerve terminal->dendrites/cell body of postsynaptic neuron->axon->nerve terminal->next neuron
where does the AP initiate, why?
initial segment, its a region of many Na+ channels
what are the passive electrical properties of axons known as
cable properties
what 2 directions can a current flow after being injected into the center of an axon
"1.flow axially along the interior of the axon
2.flow back to ground across the membrane"
what does the relative amount of current that crosses the membrane versus the amount of current that flows axially dependent on
resistance of the membrane relative to the resistance of the axial current path
what happens to the current flowing down the nerve fiber and the amount of current crossing the membrane resistance with each increment in distance along the axon
they gradually decrement
what is the axon cable mathematically modeled as
a series of RC circuits connected together
what is the membrane resistance r_m
the resistance associated with each small segment of RC circuit
what is access resistance
resistance that links the segments of the RC circuit together
what is the equation for length constant (lambda)
sq. rt.(r_m/r_a)
what is the length constant
the distance over which the steady-state membrane potential drops to 37% of the original amplitude
when are the conduction properties of the cable best
when r_a is relatively small and r_m is relatively large (decreasing the axial resistance increases the length constant and increasing the membrane resistance, increasing the length constant)
what happens at the peak of the action potential
there's an inward flow of current carried by sodium ions
what happens after artificial injection of a current at one point in an axon, whats it called
currents flow for some distances from the point of current injection called local circuit currents
what is the distance over which local circuit current flow determined by
length constant
what does local circuit flow act for
to depolarize the cell membrane for some distance from the site of current injection
does the AP normally move in one direction? why or why not
yes, cuz the membrane region behind the AP wavefront is in the refractory period and unable to support a new AP
what direction does the axon conduct AP? whats it called
in either directions, its symmetric
what is the rate of current flow in a wire
speed of light
what is the rate of electrical conduction in an axon
varies over the range .1 to 100m/s
2 major factors that affect the rate of AP propogation
axial resistance and membrane resistance
what will result in more current flowing inside the axon
increasing membrane resistance of decreasing axial resistance
2 strategies to increase the speed of AP propagation
"1.decrease the resistance of the axial path down the inside of the axon by increasing the diameter of the axon
2. increase the resistance of the cell membrane with a specialized sheathing, myelin"
more current flowing inside the axon allows for what
local circuit flow to spread over a greater length of the axon resulting in a greater spread of membrane voltage depolarization, which will initiate an AP further down the axon and speed up the rate of conduction
how do invertebrates increase speed of AP propagation
increase the diameter of the axon, which gives a greater cross-sectional area for current flow
what do vertebrates do to increase the speed of AP propagation
they produce a myelin sheath around the axon
what are myelin forming cells called
glial cells
what is myelin analogous to
plastic insulation wrapped around the copper wire of household electrical circuits
nodes of ranvier
periodic breaks in the myelin sheath
how does myelin alter current flow
by reducing the capacitance and resistance of internodal membrane, producing more efficient local circuit current flow
saltatory conduction
AP jumps from node to node
direction of integration
from the dendrites to the axon hilock
direction of self-propagating wave of depolarization
axon hillock to past the myelin sheath
invertebrate diameter
up to 1 mm
vertebrate diameter
1 to 20 micrometers
orthodromic action potentials
AP travels from the cell body down the axon towards the nerve terminal
antidromic action potential
action potential propagating from the nerve terminal to the cell body
2 broad classes of neurotransmitter receptors
"1.those that contain and integral ion channel thats gated by ligand binding
2.those that are G-protein linked"
classic example of G protein linked receptor
adrenergic and muscarinic acetylcholine receptor
classic example of ligand gated ion channel
nicotinic acetylcholine receptor
most common neurotransmitters and what types of receptors they have
acetylcholine, GABA, glycine, and glutamate have both ligand gated ion channels and G protein linked receptors
what other neurotransmitters have both types of receptors
serotonin, histamine, and ATP 
characteristics of ligand-gated ion channels
"-integral ion channel, gated by ligand binding
-multiple subunits (3,4,or 5)
-more than 100 genes in genome encode ligand-gated ion channel subunits
-underlie fast synaptic transmission"
examples of ligand gated ion channel neurotransmitters
"acetylcholine
GABA
Glycine
glutamate"
acetylcholine receptor for ligand gated ion channel
nicotinic acetylcholine receptor
GABA receptor for ligand gated ion channel
GABA_A receptor
glycine receptor for ligand gated ion channel
glycine receptor
glutamate receptor for ligand gated ion channel
"3 main kinds:
AMPA receptor Kainante receptor NMDA receptor"
characteristics of G-protein linked receptors
"-ligand binding activates G-proteins, which are intermediary effector proteins
-receptor is a single polypeptide
-receptor almost always has seven membrane spanning regions
-more than 500 genes encode ligand-gated ion channels
-underlie slow synaptic transmission"
examples of neurotransmitters for G-protein linked receptors
"acetylcholine
GABA

glutamate

noradrenaline

serotonin

ATP

dopamine

neuropeptides"
acetylcholine receptor for G-protein linked receptors
muscarinic acetylcholine receptor
GABA receptor for G-protein linked receptors
GABA_B receptor
glutamate receptor for G-protein linked receptors
metabotropic glutamate receptor
noradrenaline receptor for G-protein linked receptors
noradrenergic receptor
serotonin receptor for G-protein linked receptors
5Ht1 receptor
ATP receptor for G-protein linked receptors
P2Y, P2U receptors
dopamine receptor for G-protein linked receptors
dopamine receptor
neuropeptides receptor for G-protein linked receptors
many different kinds, including substance P, neuropeptide Y, VIP
is there homology between the 2 different families of receptors
NO
what does the large size of G protein linked receptors reflect
the large number of different neurotransmitters that act through these receptors
mechanism of action for the ligand-gated ion channels
ion channel forms an integral part of the receptor
mechanism of action for the G-protein linked receptors
the linkage to the effector protein (channel or enzyme) is more convoluted, involving at least one intermediary protein, the G protein
how fast do ligand gated channels open
within microseconds of agonist binding
how G-protein linked receptors act
in the hundred millisecond to second time frame
what are the 2 different physiological effects ligand gated ion channels can have
excitatory or inhibitory
what are excitatory channels selective for
cations
what are inhibitory channels selective for
anions
which 3 receptors belong to the same gene family and share similar structural features
nicotinic acetylcholine, GABA_A, and glycine receptors
when did glutamate receptors arise, where can they be found
arose early in evolution, and can be found in single celled bacteria
basic structure of the AChR found at the neuromuscular junction
pentamer
how many subunits in AChR
4 subunits alpha, beta, gamma, lambda
how many binding sites does AChR have, do they have equal or different affinities for ACh
two binding sites, each with diff affinities for ACh
why do AChR binding sites have diff affinities for ACh
alpha-subunits are in a non-symmetrical environment surrounded by diff subunits
what is a striking feature of the AChR
how much of it projects out of the plane of the cell membrane
how many membrane spanning domains does each subunit of the acetylcholine receptor have, whats it called
4 membrane spanning domains named M1 through M4
what are the M2 domains of the AChR important for, why
important in determining the ion permeation properties of the channel because of their location (M2 domain lines the inner surface of the channel)
what type of channel is the acetylcholine receptor
a cation channel
what does the acetylcholine receptor distinguish between
positively and negatively charged ions
what is the main determining factor for the ion selectivity of the pore
the charged residues within the channel pore
describe the pore of the AChR
there are 3 rings of negatively charged amino acid side chains within the pore which contain 3 or 4 negative charges
what is the purpose of the external and inner rings of the AchR pore
they act to decrease the the local concentration of anions around the entrance of the pore
what is the AChR selectivity filter associated with
the intermediate ring of negative charges on the cytoplasmic surface of the channel
where is the pore at its narrowest in the open state
the intermediate ring region
what does the mechanism of selectivity for the AChR pore involve
electrostatic interactions betw. ions and charged side chains
key difference betw. AChR and glycine receptor pore sequences 
what residue do all GABA and glycine receptors have
proline residue
what do the negative charges in the other rings of the AChR act for
to increase the local concentration of cations, which increases the single channel conductance of the channel
where does acetylcholine bind on the receptor
to the 2 pockets in the upper part of the receptor
what does binding of ACh induce
a conformational change in the receptor that leads to channel opening
what is gating of the AChR channel dependent on
the energy associated with ACh binding
what provides the energy for the conformational change that produces gating for voltage gated ion channels
changes in the membrane potential
what does ACh binding produce
rearrangements in alpha helices surrounding the binding site
when does the AChR open
when the M2 helices twist and shift the leucines out of their position blocking the channel, bringing the residues that form the selectivity filter into position to form the lining of the open pore
is there homology betw the amino acid sequence of the glutamate receptors and the AChr/GABAR/GlycineR gene families
NO
what do the extracellular regions of the GluR have homology to
a bacterial protein that binds the amino acid glutamine
where are the homologous regions in the GluR found
in the amino-terminal and the big extracellular loop betw. the M3 and M4 domains
what is the GluR pore design similar to
the K+ channel pore
what is the GluR assembled as
tetramer, like K+ channel
what is GluR a good example of
the modular nature of protein design, with different domains of the protein apparently coming from different original sources
do G-protein linked receptors share a common structure, what is it
YES, they have 7 membrane spanning regions and the agonist binding site lies in a deep pocket between the membrane spanning domains
what are virtually all G-protein linked receptors mediated via
intermediary proteins known as G-proteins
what are G proteins peripheral membrane
proteins located on the intracellular surface of the membrane
how many subunits are G-proteins comprised of
3 different subunits
what is the alpha subunit of G proteins
GTPase
what is the cycle of G proteins
ligand binds to the receptor, the alpha subunit of the G protein releases GDP and binds GTP. Binding of GTP induces a conformational change and the trimeric G-protein separates into 2 parts, the alpha subunit and the beta/gamma subunits. these 2 components can then activate of inhibit effector proteins independently. the cycle ends when the alpha subunit hydrolyzes GTP to GDP and the alpha subunit rebinds to the beta/gamma subunits, thereby inactivating both components of the G-protein
what determines how long the G protein-linked receptor system is turned on for the efficiency of the GTPase
effect of a subunit of G-protein
can directly activate or inhibit an ion channel or it can activate an enzyme that produces a second messenger that activates a second messenger effector protein, like kinase, that can then modify the function of an ion channel
targets of G proteins
activation of G-protein receptors can modulate almost any cellular function
how many synapses are there per cell in the mammalian CNS
100 to 100,000
how many synapses are there in human brain
10^14 synapses
what is synapse
a highly specialized cellular structure that facilitates rapid communication betw. 2 electrically excitable cells
what is the direction of the transfer of electrical excitation
from the presynaptic nerve terminal to the post-synaptic cell
what are most synapses
chemical synapses-the presynaptic cell releases a signaling molecules known as a neurotransmitter, the neurotransmitter diffuses towards the 2nd cell where it binds to a neurotransmitter receptor. binding of the neurotransmitter then triggers a response in the 2nd cell via activation of the neurotransmitter receptor
what are the functions of the unique geometry of he synapse
"1.it reduces diffusion times
2.increases the specificity of signaling"
what are diffusion times proportional to
the square of the distance over which the molecules diffuse
what is the synapse made by
2 cells
what is the nerve terminal filled with
small spherical structures known as synaptic vesicles
synaptic vesicles
membrane bound spheres that are filled with neurotransmitter
specializations on the surface of the nerve terminal
vesicle docking sites of active zones- points where the vesicles bind and then fuse with the cell membrane to release neurotransmitter into the synaptic cleft
where do voltage-gated calcium channels lie
in the presynaptic membrane
sequence of events during synaptic transmission at a typical synapse
"1.AP travels down axon
2.AP invades the nerve terminal causing depolarization

3.depolarization opens voltage-gated Ca+2 channels

4.influx of Ca+2 ions through the Ca+2 channels raises the Ca+2 conc. inside the nerve terminal

5.inc. in internal Ca conc. promotes the fusion of synaptic vesicles with the cell membrane

6.fusion of synaptic vesicles releases neurotransmitter into synaptic cleft

7.neurotransmitter binds to neurotransmitter receptors in cell membrane of post-synaptic cell

8. binding of neurotransmitter to the receptor induces a conformational change in the receptor that opens an ion channel

9. opening of ion channels produces a synaptic current in the postsynaptic cell

10.the synaptic current produces a change in the membrane potential of the postsynaptic cell, possibly triggering an AP

11.neurotransmitter is removed from the synaptic cleft

12. components of the synaptic vesicles are recycled"
what is the nature of the synapses determined by
the kind of neurotransmitter that the synapse releases and the type of neurotransmitter receptor found on the postsynaptic membrane
what do excitatory receptors allow for
cations to pass through their integral ion channels
excitatory postsynaptic potential (epsp)
when the ligand-gated ion channels open and depolarize the cell membrane potential bringing the membrane potential closer to the threshold for AP firing
inhibitory postsynaptic potential (ipsp)
activation of inhibitory receptors moves the membrane potential away from the threshold potential
neuromuscular junction
synapse betw a motor neuron and a skeletal muscle fiber
who discovered almost everything about synaptic transmission
Bernard Katz
what is the neurotransmitter at the neuromuscular junction
acetylcholine
what does the active zone of the presynaptic membrane contain
voltage-gated Ca+2 channels
contributions of Bernard Katz
"-vesicle hypothesis
-Ca hypothesis

-2 step kinetic model of AChR activation

-kinetic model of AChR desensitization

-measurements of single channel conductance and open time using noise analysis"
vesicle hypothesis
vesicles seen in the electron micrographs were filled with neurotransmitter and the miniature epsp were due to the spontaneous fusion of these vesicles with the membrane
Ca+2 hypothesis
Ca ions are the link betw excitation and secretion
synaptic delay time taken between an action potential arriving in the presynaptic nerve and the initiation of the post-synaptic action potential 
sources of the synaptic delay
"-delay associated with activation of Ca+2 channels (slower kinetics than Na+ channels)
-exocytosis

-diffusion

-activation of neurotransmitter receptors

-charging of membrane capacitance"
why is the NMJ "fail safe"
cuz the synapse is so large
how big is the epsc underlying the epsp at the NMJ, whats it called
3 times larger than needed to cross threshold- safety margin (provides a measure of security at the neuromuscular synapses during stress or disease)
how is neurotransmitter removed from the synaptic cleft
by enzyme action, reuptake, diffusion, etc.
acetylcholinesterase
enzyme that inactivates ACh at the NMJ
why is the pulse of ACh in the synaptic cleft following a presynaptic action potential quite brief
cuz of the rapid action of acetylcholinesterase enzyme
what does acetylcholinesterase split ACh into
acetate and choline
how is the membrane in the synaptic vesicles recycled
by the process of endocytosis
summation
CNS generally requires the coordinated actions of a number of cells acting on the postsynaptic neuron
what types of summation are there
temporal and spatial summation between synaptic inputs to bring the membrane potential to threshold
temporal summation
summation over time
what does repetitive firing of the same synapse cause
the membrane potential to become more depolarized than if the synapse fired more slowly
spatial summation
summation of more
than one synaptic input firing simultaneously.
what are the receptors at most excitatory receptors in the CNS
glutamate receptors
what are the 2 types of important glutamate receptors
AMPA and NMDA
genes for AMPA receptors
GluR-A, GluR-B, GluR-C, GluR-D
properties of AMPA receptors
-main form of GluR
-most native receptors contain the GluR-B subunit
-fast kinetics
-fast opening, closing, and desensitization
-low Ca permeability
-small conductance
genes for NMDA receptors
NR-1, NR-2A, NR-2B, NR-2C, NR-2D
properties of NMDA receptors
-all receptors contain the NR-1 subunit, which has the agonist binding sites
-slow kinetics
-large single channel conductance
-high Ca permeability
-channel blocked by Mg ions
-glycine is a co-agonist
what are the AMPA and NMDA subtypes of glutamate receptors named for
because of their sensitivity to artificial agonist and antagonists
agonist for NMDA receptors
NMDA
agonist for AMPA receptors
AMPA
antagonist for NMDA receptors
APV
antagonist for AMPA receptors
CNQX
what is an agonist
chemical that binds to a receptor of a cell and triggers a response by that cell.
what is an antagonist
chemical that does not provoke a biological response itself upon binding to a receptor, but blocks or dampens agonist-mediated responses.
are AMPA and NMDA found at the same excitatory synapse
YES
when does long term potentiation occur
when excitatory synaptic inputs to a neuron are strongly activated
what does potentiated mean
strengthened
what is LTP mediated by
Ca ions entering the cell through NMDA receptors
how does influx of Ca affect synaptic connection
it leads to strengthening of synaptic connection
what is modulation of the strength of synaptic connections important for
development and learning
excitotoxicity
nerve terminals depolarize, release glutamate, glutamate activates NMDA receptors and Ca ions flow into postsynaptic neuron. the rise in internal Ca concentrations can kill the postsynaptic cell
primary inhibitory neurotransmitter in the CNS
GABA
what is the GABA receptor permeable to, what effect does it have?
Cl ions, hyperpolarization
what determines whether or not the cell fires an AP
e balance of
excitatory and inhibitory synaptic inputs that the cell is receiving at any particular point in time
what is required to make a decision or produce an action.
the averages response of multiple neurons
what are slow synaptic inputs mediated by
G-protein linked receptors
what did Paul Adams discover
that one key target for the muscarinic receptor was a voltage-gated potassium channel called the M-channel
what effect will inhibiting K+ channels have on the neuron
it makes the neuron more excitable
what is the response of neurons dependent on
both on the nature of the fast synaptic inputs that
it receives and how the excitability has been modulated by prior slow synaptic inputs.
schemes for classification of voltage gated ion channels
-ion selectivity
-kinetic properties
-threshold for activation
-subcellular location
-pharmacology
-gene family
what can voltage gated ion channels be selective for
Na, K, Ca, or cations
what currents are excitatory and depolarize the cell
Na, Ca, and cation currents
what currents will decrease the excitability of the cell and hyper-polarize the membrane potential
K currents and Cl currents
kinetic parameters that are most easily observed experimentally
activation, deactivation, inactivation, and recovery from inactivation
rapidly activating channels
Na channel -I_NA
K channel- I_A (A-type K channel)
non-activating channels
Na channel-I_Na,P (persistent Na channel)
K channel-I_M (M type K channel)
what largely determines the threshold potential
properties of the transient Na current (I_Na)
what is often the single largest current in the cell
transient Na current (I_Na)
currents devoted to repolarizing the action potential
delayed rectifier K current (I_K) and the large Ca activated K (I_C)
what do subthreshold currents do? examples
they modulate the cell's response to synaptic currents. the K+ currents I_A, I_D, I_M, I_AHP, the Ca+ current I_T and the cation current I_H
which currents have negative inactivation curve
I_T, I_A, I_D
functionally differentiated subcellular compartments of neurons
dendrites, soma, axon, nerve terminal, (axon hillock)
simplest compartment of a neuron, what does it express
axon; expressing the transient sodium current and a delayed rectifier potassium current
what does the nerve terminal express
Ca+ current
what does the lack of selectivity of pharmacological agents reflect
the fact that the channel pore is a highly conserved region of the channel
classes of pharmacological agents affecting channel function
channel blockers, toxins, allosteric modifiers
what are channel blockers? ex?
small molecules that bind to the channel pore and block the passage of ions. ex: TEA, 4-AP,
XE991
what are toxins? ex?
neurotoxins from a wide variety of species that bind to ion channels
ex: tetrodotoxin,
charybdotoxin, apamin.
what are allosteric modifiers? ex?
small molecules that bind to the channel outside of the pore region and modify the channel function by modifying the kinetic properties of the channel, making it less or more likely to open
ex: dryhydropyridines
what do dihydropyridines modify
function of the L-type calcium channel
what are pharmacological agents used for
to block channels and classify them
how many families of genes are there? what are they?
5- voltage gated Na channels, voltage gated Ca channels, K channels, cyclic nucleotide-modulated channel, transient receptor potential channels
what is the total number of genes in this gene superfamily in mammals
143 genes
what is the predominant family of genes
K channel subfamily with 78 genes
what are Na and Ca channels restricted to
excitable cells
subfamily of voltage gated Na channels and # of genes
Na_V, 10
subfamily of voltage gated Ca channels and # of genes
Ca_V, 11
subfamilies of potassium channels and # of genes
K_V (40), K_Ca (8), K_2P(15), K_ir(15)
subfamilies of cyclic nucleotide-modulated channel and # of genes
CNG (6), HCN (4)
subfamilies of transient receptor potential channels and # of genes
TRP & relatives (32 genes)
main function of I_Na
trigger an AP
how many different members does the sodium channel gene family have? what are they?
9 diff members: 1.6,1.2,1.1,1.3,1.7,1.4,1.5,1.8,1.9
what are all sodium channels blocked by
the toxin TTX
which sodium channels are most sensitive
Na_V 1.1,1.2,1.3,1.7
threshold of activation for I_Na,P
-65 mV
is I_Na,P activating or non-activating current
relatively rapidly activating that is either non-activating or inactivates only slowly
what is I_Na,P blocked by
TTX
what does I_Na,P do
makes the cell more
excitable and increases firing frequency
role of Calcium channels
current carriers and indirectly control calcium concentrations by controlling the influx of Ca+2 ions into the cell
what cellular activities do calcium channels modulate
neurotransmitter release, hormone release, muscle contraction and regulation of gene expression
what are the primary characteristics of Ca channels determined by
alpha subunit
subfamilies of I_T
Ca_V 3.1,3.2, 3.3
I_T
-transient, low threshold current that activated at about -65mV.
-fast kinetics and activates and inactivates relatively rapidly
-steady state inactivation curve
subfamilies of I_L
Ca_V 1.1,1.2,1.3,1.4
I_L current
-slowly inactivating high threshold current
-can influence spike repolarization
-play an important role in regulation of gene transcription
I_N subfamiliy
Ca_V 2.1
I_P/Q subfamily
Ca_V 2.2
I_R subfamily
Ca_V 2.3
I_N, I_P/Q, I_R
-high threshold, inactivating currents
-contribute to neuronal firing properties
-mediate neurotransmitter release
where is the greatest diversity of currents found
for K+ currents
what roles do K+ currents have
shaping the response to synaptic input and modifying firing properties
what are K channels comprised of
4 subunits and assemble as tetramers
how many transmembrane domains do K_V channels have
6 transmembrane spanning domains
transmembrane domains in K_Ca channel
7
structure of inward rectifier channels (K_ir)
2 transmembrane architecture
structure of 2 pore channels (K_2P)
2 pore domains in a single subunit and assemble as dimers
I_K
The delayed rectifier current is an extremely heterogeneous current in vivo and the pharmacological
properties of the current show that in neurnons it typically has multiple separate components produced by different
channels
what is I_K blocked by
TEA
does I_K have a high or low threshold
high threshold typically
primary function of I_K current
repolarization of AP
I_A
-rapidly activating, rapidly inactivating potassium current
-low threshold
-relatively negative steady state inactivation curve
what is I_A blocked by
4- AP
what does I_Na do in dendrites
reduces the size of back-propagating AP and reduces the size of epsps
I_D
-very negative activation and steady-state inactivation curves
-sensitive to 4-AP
-involved in facilitating temporal summation of synaptic inputs
I_M
low threshold, non activating potassium current with very slow activation and deactivation kinetics
-contributor to spike accommodation during prolonged depolarizing current steps
-opposes summation of excitatory synaptic inputs
I_M
low threshold, non activating potassium current with very slow activation and deactivation kinetics
-contributor to spike accommodation during prolonged depolarizing current steps
-opposes summation of excitatory synaptic inputs
I_C
-activated by both voltage and intracellular calcium
-has relatively high channel conductance
what is I_C blocked by
TEA and charybdotoxin
primary function of I_C
repolarization of the action potential and it behaves like a delayed rectifier current
what is I_AHP activated by
intracellular calcium
I_AHP
-relatively small single channel conductance
-slow kinetics for activation and deactivation
-some are sensitive to block by toxin apamin
how many membrane spanning domains does I_IR have
2
how is gating of I_IR channel accomplished
via channel block, usually by intracellular Mg+2 ions and polyamines
what does I_IR channel contribute to
-the resting membrane potential
-facilitate synaptic transmission
who does the I_leak get contributions from
multiple channel types, predominantly potassium selective.
what genes are I_H channels encoded by
HCN1,2,3,4
is I_H cation or anion selective
cation selective
does I_H has fast or slow kinetics
slow kinetics
unique feature of I_H channel
its activated by hyperpolarization and inactivated by depolarization
Na-Ca exchanger
uses downhill movement of Na into the cell to pump Ca out by secondary active transport
what do other transporters linked to Na gradient move
amino acids from kidney tubules into blood
what kind of movement allows reuptake of neurotransmitters from synaptic cleft
secondary active transport
activation
channels move from closed to open state
deactivation
membrane potential quickly moves back to rest, the channel moves from open to closed state
inactivation
if the voltage step to 10mV is maintained for a prolonged period, the channels leave the opens state and become inactivated
2 ways a channel can inactivate
N type
C type
what is N type inactivation
a ball (located at amino terminus of protein) blocks conduction through the pore
what is C type activation
complex; constriction of the pore
overshoot
height of AP above zero
when does absolute refractory period occur
during repolarization
when does relative refractory period occur
during afterhyperpolarization
spatial summation
summation of more than one synaptic input firing simultaneously
when does long term potentiation occur
when excitatory synaptic inputs are strongly activated
excitotoxicity
cell toxicity thats produced by excitatory neurotransmitter;
stroke->release glutamate->NMDA receptors activate & release Ca->postsynaptic cell dies
receptors at most excitatory receptors in CNS
glutamate receptors; AMPA & NMDA
primary inhibitory neurotransmitter
GABA
describe AMPA receptors
rapidly activated by glutamate, pass monovalent cations, have a linear Vl with reversal potential around 0mV
describe NMDA receptors
activated by both agonist & voltage, Vl curve for NMDA isnt linear cuz Mg ions block the channel
when does NMDA pass significant current
at positive potentials
when does APV have a large effect? on what?
at 20 mV, NMDA receptor
pyramidal cells
single layer of projection neurons on hippocampus
trisynaptic current
major pathway through hippocampus
flow of info in hippocampus
from the cortex & back to the cortex
where did they stimulate & record in the experiment of the hippocampus
stimulated the perforant pathway and recorded from cells in Dentate gyrus
post-tetanic potentials (PTP)
occurs when a rapid repeated stimulus (tetanic stimulus) causes transient increase in synaptic strength
long term potentiation (LTP)
occurs after PTP, when there's a maintained enchancement
properties of LTP
-specificity
-cooperativity
-associativity
specificity of LTP
when strong & weak input to same cell arent closely paired in time then only the strong input shows LTP
cooperativity of LTP
if only weak input is stimulated, LTP doesnt form
associativity of LTP
is a strong input is paired with a weak input, the weak input will show LTP
what is required for induction of LTP
post-synaptic depolarization
hebbian synapses
requirement of post-synaptic activity in conjuction with presynaptic activity
what is the NMDA receptor like at resting membrane potential
it is blocked by Mg
what must occur for the NMDA receptor to open
neurotransmitter must bind to the receptor and the cell membrane must be depolarized
what is the NMDA receptor blocked by
agonist glutamate & voltage
how does APV block the LTP
by blocking Ca influx through the NMDA receptor
why does specificity occur in LTP
only strong inputs depolarize the cell enough to relieve Mg block of NMDA receptor and receive Ca influx
why does cooperativity occur in LTP
strong synaptic input is required to depolarize the cell and allow Ca influx
why does associativity occur in LTP
strong input can depolarize the cell sufficiently to allow Ca influx at the synapses innervated by weak input
2 kinds of LTP
associative & non associative
describe associative LTP
-NMDA receptor dependent (strong input can result in enhancement of weak input)
-mechanism for encoding associations between temporally correlated events
describe non associative LTP
these synapses have few or no NMDA receptors
do all 3 synapses in trisynaptic pathway demonstrate LTP
yes!