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94 Cards in this Set

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Extra Cellular Matrix:
What is it?
What makes it?
Major Components:
Macromolecular complex synthesized locally by fibroblasts that constitutes a large portion of any tissue.

Components:
Proteoglycans & Glycosaminoglycans
Adhesion Proteins: Fibronectin, Integrins, Laminin
Collagen
Elastic Fibers: Elastin, Fibrillin
Role of ECM
1. Mechanical Support
2. Cell orientation
3. Control of cell growth
4. Cell differentiation
5. Establish tissue microenvironment
6. Storage and presentation to the cell of regulatory factors and growth factors
Carcinoma vs. Sarcoma
Carcinoma: Cancer of the epithelium that has to break through the basal lamina to become invasive

Sarcoma: Malignancy of the Mesenchyme - already invasive
Macrophage
Derivation:
Function:
Derivation: Bone Marrow --> Monocyte --> Macrophage
Function: Phagocytosis of antibody-antigen complex
Antigen presentation to lymphocytes
Turnover of connective tissue ground substance
Phagocytosis of apoptotic bodies
Found in loose connective tissue:
1. Collagen

2. Fibroblasts

3. Lymphocytes - round with minimal to no cytoplasm

4. Plasma Cell

5. Macrophage - dark, granular cytoplasm around the nucleus

6. Adipose Cells
Found In Dense Regular Connective Tissue:
1. Collagen

2. Fibroblasts
Method For Preparing Routine Samples For Light Microscopy
1. Submission
2. Accessioning
3. Fixation - formalin
4. Dehydration - ethanol
5. Clearing - xylene
6. Embedding - wax
7. Sectioning
8. Mounting
9. Re-hydrating
10. Staining
What does a tissue sample represent?
A 2D representation of a 3D structure
Method for preparing EM samples
1. Submission
2. Accessioning
3. Fixation
4. Dehydration
5. Clearing
6. Embedding
7. Sectioning
8. Mounting
9. Staining
4 Fundamental Tissues
1. Epithelium
2. Nerve
3. Muscle
4. Connective Tissue
Role of formalin step
1. Arrest cells in mitosis
2. Terminates cell metabolism
3. Prevents autolysis and decomposition
4. Kills pathogenic microorganisms
Method For Preparing Routine Samples For Light Microscopy
1. Submission
2. Accessioning
3. Fixation - formalin
4. Dehydration - ethanol
5. Clearing - xylene
6. Embedding - wax
7. Sectioning
8. Mounting
9. Re-hydrating
10. Staining
What is preserved in the tissue sample after clearing?
Large molecules:

1. Nucleoproteins, DNA, mRNA
2. Intermediate filaments, microtubules, collagen
3. membrane phospholipid, glycolipid
What does a tissue sample represent?
A 2D representation of a 3D structure
What is washed out of the tissue sample after clearing?
Small molecules and soluble components

1. tRNA
2. Glycogen
3. Neutral Lipids
Method for preparing EM samples
1. Submission
2. Accessioning
3. Fixation
4. Dehydration
5. Clearing
6. Embedding
7. Sectioning
8. Mounting
9. Staining
Method for preparing frozen section samples:
1. Submission
2. Accessioning
3. Embedding - Cryoprotectant
4. Sectioning - Cryostat
5. Mounting - glass slides
6. Staining - H&E, Oil Red O
4 Fundamental Tissues
1. Epithelium
2. Nerve
3. Muscle
4. Connective Tissue
Stain for Carbohydrates
1. PAS

2. Mucicarmine
Role of formalin step
1. Arrest cells in mitosis
2. Terminates cell metabolism
3. Prevents autolysis and decomposition
4. Kills pathogenic microorganisms
Stain for connective tissue
1. Trichrome

2. Reticulin

3. Elastin
What is preserved in the tissue sample after clearing?
Large molecules:

1. Nucleoproteins, DNA, mRNA
2. Intermediate filaments, microtubules, collagen
3. membrane phospholipid, glycolipid
What is washed out of the tissue sample after clearing?
Small molecules and soluble components

1. tRNA
2. Glycogen
3. Neutral Lipids
Method for preparing frozen section samples:
1. Submission
2. Accessioning
3. Embedding - Cryoprotectant
4. Sectioning - Cryostat
5. Mounting - glass slides
6. Staining - H&E, Oil Red O
Stain for Carbohydrates
1. PAS

2. Mucicarmine
Stain for connective tissue
1. Trichrome

2. Reticulin

3. Elastin
Stain for Amyloid
1. Congo Red

2. Sirius Red
Stain for fat
1. Sudan B

2. Oil Red O
Stain for microorganisms
1. AFB - mycobacteria

2. GMS - fungus

3. Gram - bacteria
Stain for nervous system
1. Luxol Blue

2. Cajal

3. Nissl
Stain for pigments and minerals
1. Iron - prussian blue

2. Calcium - von kossa

3. Copper - rhodabine
Cytoplasmic Inclusions
1. Hemosiderin - iron

2. Lipofuscin - Wear and tear

3. Glycogen - Around the mitochondria
Filament type in Epithelia
Cytokeratins

Examples?
Keratinizing and non-keratinizing epithelia
Filament type in muscle
Desmin

Examples?
Smooth and striated muscle
Filament Type in Mesenchymal Fibroblasts
Vimentin

Examples?
Chondroblasts, macrophages, endothelial cells, vascular smooth muscle
Filament Type in Glial Cells
Glial Fibrillary Acidotic Proteins
Astrocytes
Filament type in neurons
Neurofilaments
Nerve cell body and processes
Examples of Microfilaments
Actin and Myosin
Examples of intermediate filaments
Cytoskeleton (also made of microtubules, thin filaments, centrioles)
Microvilli - function and composition
Function - Increase surface area for absorption

Composition - Actin (microfilaments)
Examples of Microtubules
Components of cilia

Made of tubulin
Cilia - function and composition
Function - Moving substances out of the respiratory tract

Composition - Tubulin (microtubules)
Golgi Apparatus Function
Proteins enter at the Cis face from the RER.
Proteins exit through the Trans face. They exit inside secretory vesicles.
Smooth ER function
1. Detoxification

2. Production of cholesterols, steroids, and lipids

3. Sequesters Ca++ in muscles
Rough ER function
Synthesis and modification of proteins for packaging
Difference between LM and EM preparation
1. EM does not involve a rehydration step because it requires a very thin sample that electrons may pass though.
2. Mounting - copper matrix
3. Fixation - Glutaraldehyde and OsO4
4. Clearing - Propylene Oxide
5. Embedding is done with plastic
6. Sectioning – ultramicrotome
7. Staining – lead citrate, uranyl acetate
FISH (Fluorescence In Situ Hybridization
Probes, which are segments of clones DNA labeled with a fluorescent tag and hybridized to chromosomal DNA. This can be done during interphase, which is where cells spend most of their time.
Pars Amorpha
Where rRNA is transcribed
Pars Fibrosa
Filled with rRNA transcripts
Pars Granulosa
Mature ribosomal subunits
Cyclic Alterations between mitosis and interphase.
G0 – cell is out of the cell cycle, but can be bumped back in
G1 – cells get bigger – check point (yes, duplicate)
S Phase – DNA replication
G2 – Cells get bigger again – check point (yes, duplicate)
M - Mitosis
Geimsa Stain
Blood and Bone Marrow Stain

Can differentiate white and red blood cells
Direct vs. Indirect Immunocytochemistry
Direct – An antibody is deployed against a certain molecule

Indirect – An antibody is deployed against an antibody of a certain molecule
Pinocytosis
Cellular drinking and small molecules
Phagocytosis
Ingestion of large particles such as cell debris, bacteria, and other foreign materials
Receptor-mediated endocytosis
Allows entry of specific molecules into the cell
Describe the structural organization of Centrioles and their relationship to microtubules.
Microtubules form around centrioles and position the mitotic spindle properly
Apoptosis vs. Necrosis
Apoptosis - Programmed cell death. Highly regulated process in which cells rapidly produce small membrane-enclosed apoptotic bodies, which undergo phagocytosis by neighboring cells or macrophages

Necrosis – Result of accidental injury. The cell swells and their organelles increase in volume. They burst, realeasing their contents into the extracellular space. Immunodefensive cells are prompted by macrophages to promote inflammation.
Describe how dysfunction of cell cycle checkpoints can lead to tumor cell production.
At G1, the DNA can be fixed before starting S phase, but if the gene encoding p53 is damaged, then recognition of DNA damage is dysfunctional, and damaged DNA is replicated
How are actin filaments in microvilli cross-linked to each other?
Fimbrin and Villin
What is the principal function of the zonula adherens?
Zonula Adherens function is to give rigidity and cohesion to an epithelium
The basal lamina can only be seen by EM. What stain does EM use?
Uronyl Acetate and Lead Acetate
What are desmosomes made of and what is their function?
Desmocolin and desmoglein

Function: Resist shearing forces
2 Kinds of connective tissue proper
Loose and Dense Connective Tissue
Which cells are resident cells of connective tissue?
1. Fibroblasts

2. Neutrophils

3. Macrophages

4. Lymphocytes (not permanent residents)
What differentiates into a macrophage?
Monocyte
What is a macrophage called in
skin?
Langerhans
What is a macrophage called in liver?
Kuppfer
What is a macrophage called in Lungs?
Dust Cells
What is a macrophage called in Brain?
Microglia
What is a macrophage called in connective tissue?
1. Multinuclear Giant Cell

2. Macrophage
What is a macrophage called in Blood?
Monocyte
What is a macrophage called in bone?
Osteoclast
What is a macrophage called in Lymph nodes?
Dendritic Cell
What is a Barr Body?
Genetically inactive X chromatin that can be seen in the buccal epithelium.
What are epithelioid cells?
Groups of Macrophages or Multinuclear Giant Macrophages that are aggregated when there is pathology. They look like epithelium.
What differentiates into a mast cell?
Basophil
Mast Cell Function and Structure
Function: They release granules upon exposure to antigens. Involved in histamine reaction.

Found - near blood vessels

Function - Participate in allergic reactions
What differentiates into a plasma cell?
Lymphocyte
Eosinophils - Structure and Function
Structure - Large granules that stain red with H&E and a characteristic BI-LOBED nucleus.

Function - They phagocytose antigen-antibody complexes and mediate allergic reactions and asthma.
Neutrophils - Structure and Function
Structure - Granules that stain lightly and 2-5 nuclear lobes linked by thin extensions. Contain lysosomes and barr bodies.

Function - Break down engulfed bacteria with lysosomes. They clean up enflamed and necrotic tissue. They are short lived.
Where is mucous connective tissue usually found?

What does it resemble?
In the umbilical cord.

It resembles embryonic mesenchyme.
Stains that let you study adipose tissue.
1. Oil Red O - used during cryostat

2. Osmium Tetroxide - preserves the lipid

3. H&E - shows the vacuole that is left after clearing.
Where are white adipose cells found?
In loose or irregular dense connective tissue.
What hormone does unilocular adepocyte release?

What is the function of this hormone?
Hormone = Leptin

Function of Leptin = It is the satiety response. It regulates the amoung of adipose tissue and reulates the appetite under normal condition.
Where would you find white adipose tissue in a person who was undernourished?
Adipose tissue in the palms, soles, and retroorbital fat pads.
Stain for connective tissue
Mallory Trichrome
Pararosaniline - Toluidine Blue Stain
Chromatin stains purple and cytoplasm and collagen stain violet
Where is brown fat located?
1. Around the kidney

2. Mediastinum

3. Adrenal Glands

4. Aorta
Stain for blood
Giemsa
Stain for Collagen Type III
EVG - silver stain
Stain for Lipids
Sudan Black
What organelles can only be seen with EM?
Ribosomes

Smooth ER

Plasma Membrane

Endosomes
Resident Cells
1. Fibroblasts

2. Adipocytes

3. Macrophages

4. Mast Cells

5. Adult Stem Cells