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12 Cards in this Set

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Light MicroscopyFixation

1. Fix sample with an aqueous formaldehyde solution


2. Dehydrate by soaking in a series of ethanol solutions of increasing concentration (50%->70%->90%->100%)


3. Embed the dehydrated tissue in paraffin wax

Light MicroscopyResolution

= ~0.2μm or 200 nm


No resolution allows light microscopy to resolve a biological membrane

Electron MicroscopyResolution

=~1.0 nm in biological samples (remember 1Å = 0.1nm)


At 8-10nm you can resolve a biological membrane

Electron MicroscopyFixation

1. Fix sample in glutaraldehyde then 〖OsO〗_4 (osmium tetroxide)


2. Dehydrate with increasing concentration of ethanol solution as in light microscopy


3. Embed in hard plastic (ex. Epoxy or acrylate resins)


Allows thinner sections to be cut than in light microscopy

Hematoxylin & Eosin Staining (H&E)

General Tissue staining for LM


For staining of paraffin section




Hematoxylin


A basic dye - has a positive charge (cationic)


Binds negatively charged (anionic) tissue components (components that exhibit basophilia)




Eosin


An acid dye - has a negative charge and binds positively charged tissue components


These positively charged components are said to exhibit acidophilia

Periodic Acid Schiff (PAS)

Selective Tissue Stains for LM


A reaction that stains carbohydrates on cell molecules


Ex. Glycoproteins, glycogen, etc.

Toluidine Blue

Selective Tissue Stains for LM


A metachromatic dye - changes color depending on the amount of dye that binds a molecule


Ex. Stains nucleic acids blue while it stains polysaccharides purple


A basic dye with a high affinity for anionic/acidic tissue components

Direct Immunocytochemistry

Specific Tissue Stains for LM


A labeled primary antibody directly binds the target antigen within the tissue sample


Specific Tissue Stains for LM


The labeled structures are then observed in a fluorescence microscope where light of a specific wavelengths excites the fluorochrome -> emission o fa longer wavelength of light


This emitted light can be viewed by the eye or captured on a camera or photomultiplier tube


Not useful when there is a low concentration of the target as the emitted light may be too weak to view (only 1 primary antibody can bind each antigen)


However it is easier to do than indirect immunochemistry

Indirect Immunocytochemistry

Specific Tissue Stains for LM


An unlabeled primary antibody binds directly with the target antigen in the tissue


A labeled secondary antibody then binds the primary antibody -> amplification of the fluorescent signal (because multiple secondary antibodies can bind a single primary antibody)

Immunoperoxidase Immunocytochemistry

Specific Tissue Stains for LM


An unlabeled primary antibody binds directly with the target tissue


A secondary antibody tagged with a peroxidase enzyme then binds the primary antibody


The addition of the enzyme substrate activates the enzyme -> substrate cleavage -> a fluorescent compound


This resultant fluorescent compound is insoluble and precipitates at the site of cleavage -> fluorescence in the region of the target

Intrinsically Fluorescent Molecules

Molecules with autoflourescence


Useful for tracking target substrate movement in living cells




DAPI - for tagging nucleic acids and fluoresces blue


Can be introduced into a cell in order to visualize DNA during mitosis




GFP - for tagging proteins


Must be transfected into the target via an expression vector that encodes a GFP-target protein chimera

Immunocytochemistry for EM

Immunogold


An antibody with an attached colloidal gold molecule binds the target -> electron dense markers on the targets surface




Heavy Metal


An antibody with an attach ferritin or other heavy metal (ex. Osmium) binds the target -> electron dense markers on target