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51 Cards in this Set

  • Front
  • Back
Polar covalent bonds
One atom is more electronegative than the other
Non polar covalent bonds
Atoms share equal electrons
Hydrogen bonds
Weak chemical bonds that must be broken down to vaporize
Functional Group- Carboxyl
COOH, polar, e.g. organic acid and amino acids
Functional Group- Hydroxyl
OH, polar, e.g. sugars
Functional Group- amino
NH2, polar, amino acids
Functional group- Sulhydryl
SH, polar, cysteine
Functional group- Phosphate
PO4, polar, ATP and DNA
Functional group- methyl
CH3, nonpolar, methylated DNA
Saturated carbon chains
Long hydrocarbon chains (more hydrogen) molecules packed together
Unsaturated carbon chains
Can not pack closely together, kinks, liquid
Organic molecules- proteins
enzymes
organic molecule- carbohydrates
cannot be electrically charged, long hydrocarbons
organic molecule-lipids
fats, triglyc., Low density
organic molecules- Nucleic acid
5C sugar, phosphate and a nitrogenous base
Macromolecules are synthesized by ?
Dehydration reaction
Macromolecules are digested by ?
Hydrolysis (break down of water)
Properties of water
Good solvent
Regulates temperature (high specific heat and vaporization)]
Good density (expansion upon freezing)
Cohesive (high surface tension)
How do this properties of water help? *
When water is it in liquid stage, hydrogen bonds are very fragile therefore bonds can break and form with greater frequency.
Acid Base Balance
0-6 Acid, More H+
7 Neutral, H+= OH-
8-14 Base, more OH-
Hydrophillic
affinity for water, love
Hydrophobic
repel water
Primary structure
sequence of amino acids
Secondary structure
polypeptide chain coiled with alpha helix and Beta helix are joined by hydrogen bonds
Tertiary Structure
Fully dimensional shape of a fully polypeptide
Quaternary Structure
2 or more polypetide chains
Disulfide Bonds
Maintain the shape of a polypeptide chain
Denaturation
Change of the 3 dimensional shape due to disruption, hydrogen bonds, disulfide bridges
Endomembrane System
Nucleus- Nuclear envelope
Smooth ER (cells that secrete lipids) Rough ER- make and secrete proteins and vesicles ready for the Golgi- modigy the proteins, e.g. insulin. COnverted into lysosomes which fuse for digestion into the plasma membrane
Perixosomes
break fatty acids and detoxify
Chloroplasts
Site of photosynthesis, make ATP, @ Calvin cycle
Mitichondria
Site of cellular respiration, make ATP, @ krebs cycle
Simple diffusion
movement of any substance from high to low concentration, no protein or energy required
Facilitated Diffusion
movement of any substance from high to low concentration, no energy, protein required
Active transport
Movement of any substance against its concentration gradient
Endocytosis
Plasma membrane surrounds as part of the environment
Exocytosis
Vesicle fuses with a plasma membrane and its released
Endergonic reactions:
Absorbs free energy from its surroundings, Final energy is greater than initial, G is positive, Reactions require energy input to ocurr
Exergonic reaction
Final is less than initial, G is negative, spontaneous, energy is added
ATP hydrolisis
Exergonic reaction, ATP bonds are broken down, the energy released if for chemical and mechanical work (shape and abulity to bind to a cytoskeleton)
Energy coupled reactions
They trap all the energy and then they release it from endergonic to exergonic
Induced Fit Model
Proteins speed up the reaction but are not used in the reaction. Bring chemical groups of the active site in positions that enhance the ability to break down a reaction
Shape and Change
the enzyme structure shape and change can make it specific to catalyze a reaction
Competitive Inhibitor
Block substrate from the enzyme competing for an active site
Noncompetitive inhibitor
CHanges the shape of the enzyme altering the active site
Second Law of thermodynamics
When reaction occurs entropy increases
Total solute gradient:
Necessary to cause osmotic movement across a membrane
G
For two reactions to be energy coupled, their G must equal to 1
weak acid into the inner membrane?
ATP increases more H concentration more diffusion of protons
Proton Pump- how it uses ATP
Exergonic ADP + P=ATP
Endergonic: H go down its concentration gradient
enzymes speed up ? the reactions.. in terms of energy and physical
Energy? they activate the energy
Physical? bind to active site, stress or weaken