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99 Cards in this Set

  • Front
  • Back
Central Case Study: Vanishing Oysters of the Chesapeake Bay
Chesapeake Bay was the world’s largest oyster fishery
Overharvesting, pollution, and habitat destruction ruined it
The economy lost $4 billion from 1980 to 2010
Strict pollution standards and oyster restoration efforts give reason for hope
System
a network of relationships among components that interact with and influence one another
Exchange of energy, matter, or information
Receives inputs of energy, matter, or information; processes these inputs; and produces outputs
Feedback loop
a circular process in which a system’s output serves as input to that same system
Negative feedback loop
output resulting from a system moving in one direction acts as an input that moves the system in the other direction
Input and output neutralize one another
Stabilizes the system
Example: if we get hot, we sweat and cool down
Most systems in n...
output resulting from a system moving in one direction acts as an input that moves the system in the other direction
Input and output neutralize one another
Stabilizes the system
Example: if we get hot, we sweat and cool down
Most systems in nature involve negative feedback loops
Positive feedback loop
instead of stabilizing a system, it drives it further toward an extreme
Example: white glaciers reflect sunlight and keep surfaces cool
Melting ice exposes dark soil, which absorbs sunlight
Causes further warming and melting of more ice
Runawa...
instead of stabilizing a system, it drives it further toward an extreme
Example: white glaciers reflect sunlight and keep surfaces cool
Melting ice exposes dark soil, which absorbs sunlight
Causes further warming and melting of more ice
Runaway cycles of positive feedback are rare in nature
But are common in natural systems altered by humans
Lithosphere
rock and sediment
Atmosphere
the air surrounding the planet
Hydrosphere
all water on Earth
Biosphere
the planet’s living organisms
Plus the abiotic (nonliving) parts they interact with
Categorizing systems allows humans to understand Earth’s complexity
Most systems overlap
The Chesapeake Bay: a systems perspective
The Chesapeake Bay and rivers that empty into it are an interacting system:
It receives very high levels of nitrogen and phosphorus from agriculture from 6 states, and air pollution from 15 states
The Chesapeake Bay and rivers that empty into it are an interacting system:
It receives very high levels of nitrogen and phosphorus from agriculture from 6 states, and air pollution from 15 states
Sources of nitrogen and phosphorus entering the Chesapeake Bay - watershed Definition
Nitrogen and phosphorus enter the Chesapeake watershed (the land area that drains water into a river), causing….
Phytoplankton (microscopic algae and bacteria) to grow, then…
Bacteria eat dead phytoplankton and wastes and deplete oxygen, cau...
Nitrogen and phosphorus enter the Chesapeake watershed (the land area that drains water into a river), causing….
Phytoplankton (microscopic algae and bacteria) to grow, then…
Bacteria eat dead phytoplankton and wastes and deplete oxygen, causing…
Fish and other aquatic organisms to flee or suffocate
Eutrophication
the process of
Nutrient over enrichment, blooms of algae, increased production of organic matter, and ecosystem degradation
Eutrophication in aquatic systems
Global hypoxic dead zones
Nutrient pollution from farms, cities, and industries has led to more than 400 hypoxic (oxygen-depleted) dead zones
Nutrient pollution from farms, cities, and industries has led to more than 400 hypoxic (oxygen-depleted) dead zones
People are changing the chemistry of Earth’s systems
Chemistry is crucial for understanding how:
Chemicals affect the health of wildlife and people
Pollutants cause acid precipitation
Synthetic chemicals thin the ozone layer
How gases contribute to global climate change
Matter
all material in the universe that has mass and occupies space
It can be solid, liquid, or gas
Law of conservation of matter
: matter can be transformed from one type of substance into others
But it cannot be destroyed or created
Because the amount of matter stays constant
It is recycled in nutrient cycles and ecosystems
We cannot simply wish pollution and waste away
Element
a fundamental type of matter
A chemical substance with a given set of properties
Examples: nitrogen, phosphorus, oxygen
92 natural and 20 artificially created elements exist
Nutrients
elements needed in large amounts by organisms
Examples: carbon, nitrogen, calcium
Atoms
the smallest components that maintain an element’s chemical properties
protons & neutrons
The atom’s nucleus (center) has protons (positively charged particles) and neutrons (lacking electric charge)
Atomic number
the number of protons
Electrons
: negatively charged particles surrounding the nucleus
Balance the protons’ positive charge
The structure of an atom
Isotopes
atoms of an element with different numbers of neutrons
Mass number
the number of protons + neutrons
Isotopes of an element behave slightly differently
Ions
atoms that gain or lose electrons 
They are electrically charged
atoms that gain or lose electrons
They are electrically charged
Radioactive isotopes
Radioactive isotopes shed subatomic particles and emit high-energy radiation.

They decay until they become nonradioactive stable isotopes
Half-life:
the amount of time it takes for one-half of the atoms in a radioisotope to give off radiation and decay
Different radioisotopes have different half-lives ranging from fractions of a second to billions of years
Uranium-235, used in commercial nuclear power, has a half-life of 700 million years
Molecules and compounds
An attraction for each other’s electrons bonds atoms
Molecules
combinations of two or more atoms
Chemical formula
indicates the type and number of atoms in the molecule (oxygen gas: O2)
Compound
: a molecule composed of atoms of two or more different elements
Water: two hydrogen atoms bonded to one oxygen atom: H2O
Carbon dioxide
one carbon atom with two oxygen atoms: CO2
Ionic bonds
ions of different charges bind together
Table salt (NaCl): the Na+ ion is bound to the Cl– ion
Covalent bond
atoms without electrical charges “share” electrons
Example: hydrogen atoms share electrons – H2
Solutions
electrons, molecules and compounds come together with no chemical bonding
Air contains O2, N2, H2O, CO2, methane (CH4), ozone (O3)
Human blood, ocean water, plant sap, metal alloys
Hydrogen ions determine acidity
Water can split into H+ and OH–
The pH scale quantifies the acidity or basicity of solutions
Acidic solutions: pH < 7 
Contain more H+
Basic solutions: pH > 7 
Contain more OH–
Neutral solutions: pH: 7 
A pH of 6 contains 10 times      ...
Water can split into H+ and OH–
The pH scale quantifies the acidity or basicity of solutions
Acidic solutions: pH < 7
Contain more H+
Basic solutions: pH > 7
Contain more OH–
Neutral solutions: pH: 7
A pH of 6 contains 10 times as many H+ as a pH of 7
Matter is composed of compounds
Living things depend on organic compounds
Organic compounds
carbon atoms bonded together
They may include other elements: nitrogen, oxygen, sulfur, and phosphorus

Carbon can be linked in elaborate chains, rings, other structures
Forming millions of different organic compounds
Inorganic compounds
lack the carbon–carbon bond
Hydrocarbons
organic compounds that contain only carbon and hydrogen
The simplest hydrocarbon is methane (natural gas)
Fossil fuels consist of hydrocarbons
Crude oil contains hundreds of types of hydrocarbons
organic compounds that contain only carbon and hydrogen
The simplest hydrocarbon is methane (natural gas)
Fossil fuels consist of hydrocarbons
Crude oil contains hundreds of types of hydrocarbons
Polymers
long chains of repeated organic compounds
Play key roles as building blocks of life
Three essential types of polymers:
Proteins
Nucleic acids
Carbohydrates
Lipids are not polymers, but are also essential
Fats, oils, phospholipids, waxes, steroids
Macromolecules
large-sized molecules essential to life
Proteins are long chains of amino acids
Proteins comprise most of an organism’s matter
They produce tissues, provide structural support, store energy, transport material
Animals use proteins to generate skin, hair, muscles, and tendons
Some are components of the immune system or hormones (chemical messengers)
enzymes
They can serve as enzymes: molecules that promote (catalyze) chemical reactions
Deoxyribonucleic acid (DNA) and ribonucleic acid (RNA)
carry hereditary information of organisms
Nucleic acids
long chains of nucleotides that contain sugar, phosphate, and a nitrogen base
Genes
regions of DNA that code for proteins that perform certain functions
regions of DNA that code for proteins that perform certain functions
Carbohydrates
: include simple sugars and large molecules of simple sugars bonded together
Glucose fuels cells and builds complex carbohydrates
Plants store energy in starch, a complex carbohydrate
Animals eat plants to get starch
Organisms build structures from complex carbohydrates
Chitin forms shells of insects and crustaceans
Cellulose found in cell walls of plants
Lipids
do not dissolve in water
Fats and oils (energy), waxes (structure), steroids
cells
All living things are composed of cells: the most basic unit of organismal organization

Cells vary in size, shape, and function
They are classified according to their structure
Eukaryotes
plants, animals, fungi, protists
Contain a membrane-enclosed nucleus
Their membrane-enclosed organelles do specific things
Prokaryotes
bacteria and archaea
Single-celled, lacking membrane-enclosed nucleus and organelles
Energy
an intangible phenomenon that can change the position, physical composition, temperature of matter
Involved in biological, chemical, physical processes
Potential energy
energy of position
Kinetic energy
energy of motion
Chemical energy
potential energy held in the bonds between atoms

Changing potential into kinetic energy
Releases energy
Produces motion, action, or heat
Potential vs. kinetic energy
Potential energy stored in our food becomes kinetic energy when we exercise and releases carbon dioxide, water, and heat as by-products
Potential energy stored in our food becomes kinetic energy when we exercise and releases carbon dioxide, water, and heat as by-products
First law of thermodynamics
energy can change form but cannot be created or destroyed
Second law of thermodynamics
energy changes from a more-ordered to a less-ordered state
Entropy
an increasing state of disorder

Living organisms resist entropy by getting energy from food and photosynthesis
Dead organisms get no energy and through decomposition lose their organized structure
The sun’s energy powers living systems
Energy that powers Earth’s ecological systems comes mainly from the sun
The sun releases radiation from the electromagnetic spectrum
Some is visible light
Energy that powers Earth’s ecological systems comes mainly from the sun
The sun releases radiation from the electromagnetic spectrum
Some is visible light
Autotrophs (producers)
organisms that use the sun’s energy to produce their own food
Plants, algae, cyanobacteria
Photosynthesis ---- Will be on TEST
the process of turning the sun’s light energy into high-quality chemical energy
Sunlight converts carbon dioxide and water into sugars
Moving to lower entropy
the process of turning the sun’s light energy into high-quality chemical energy
Sunlight converts carbon dioxide and water into sugars
Moving to lower entropy
Photosynthesis produces food
Chloroplasts: organelles where photosynthesis occurs
Contain chlorophyll: a light-absorbing pigment

Light reaction: solar energy splits water and creates high-energy molecules that fuel the …

Calvin cycle: links carbon atoms from carbon dioxide into sugar (glucose)

6CO2 + 6H2O + sun’s energy C6H12O6 (sugar) + 6O2
Cellular respiration releases energy
It occurs in all living things (plants, animals, etc.)
Organisms use chemical energy created by photosynthesis
Oxygen breaks the high-energy chemical glucose bonds
The energy is used to make other chemical bonds or tasks
Heterotrophs
organisms that gain energy by feeding on others
Animals, fungi, microbes
The energy is used for cellular tasks

C6H12O6 (sugar) + 6O2 ----->6CO2 + 6H2O + energy
Ecosystem
all organisms and nonliving entities occurring and interacting in a particular area
Animals, plants, water, soil, nutrients, etc.
Biological entities are tightly intertwined with the chemical and physical aspects of their environment

For example, in the Chesapeake Bay estuary (a water body where fresh river water flows into salt ocean water):
Organisms are affected by water, sediment, and nutrients from the water and land
The chemical composition of the water is affected by organism photosynthesis, respiration, and decomposition
Energy and matter flow through ecosystems
Sun energy flows in one direction through ecosystems
Energy is processed and transformed
Sun energy flows in one direction through ecosystems
Energy is processed and transformed
Energy and matter flow through ecosystems
Matter is recycled within ecosystems
Outputs: heat, water flow, and waste
Matter is recycled within ecosystems
Outputs: heat, water flow, and waste
Primary production
conversion of solar energy to chemical energy in sugars by autotrophs during photosynthesis
Gross primary production
total amount of chemical energy produced by autotrophs
Most energy is used to power their own metabolism
Net primary production
energy remaining after respiration
Equals gross primary production – cellular respiration
It is used to generate biomass (leaves, stems, roots)
Available for heterotrophs
Productivity
rate at which autotrophs convert energy to biomass
High net primary productivity:
ecosystems whose plants rapidly convert solar energy to biomass
ecosystems whose plants rapidly convert solar energy to biomass
A global map of net primary productivity
NPP increases with temperature and precipitation on land, and with light and nutrients in aquatic ecosystems
NPP increases with temperature and precipitation on land, and with light and nutrients in aquatic ecosystems
Ecosystems interact across landscapes
Ecosystems vary greatly in size (puddle, forest, bay, etc.)
The term ecosystem is most often applied to self-contained systems of moderate geographic extent
Adjacent ecosystems may interact extensively
Ecotones: transitional zones between two ecosystems in which elements of each ecosystem mix
It may help to view ecosystems on a larger geographic scale
Encompassing multiple ecosystems
Geographic information systems (GIS) use computer software to layer multiple types of data together
Landscape ecology & Patches
the study of how landscape structure affects the abundance, distribution, and interaction of organisms
Useful for studying migrating birds, fish, mammals
Helpful for planning sustainable regional development

Patches: ecosystems, communities o...
the study of how landscape structure affects the abundance, distribution, and interaction of organisms
Useful for studying migrating birds, fish, mammals
Helpful for planning sustainable regional development

Patches: ecosystems, communities or habitat form the landscape and are distributed in complex patterns (a mosaic)

This landscape consists of a mosaic of patches of 5 ecosystems
Conservation biologists
study the loss, protection, and restoration of biodiversity
Humans are dividing habitat into small, isolated patches
Corridors of habitat can link patches
Populations of organisms have specific habitat requirements
They occupy suitable patches of habitat in the landscape
If a habitat is highly fragmented and isolated
Organisms in patches may perish
Conservation biologists may use corridors of habitat to link patches to preserve biodiversity
Model
a simplified representation of a complicated natural process
Helps us understand processes and make predictions
Ecological modeling
constructs and tests models to explain and predict how ecological systems work
Grounded in actual data and based on hypotheses
Extremely useful in large, intricate systems that are hard to isolate and study
Example: studying the flow of nutrients into the Chesapeake Bay and oyster responses to changing water conditions
Ecosystem services
essential services provided by healthy, normally functioning ecosystems
When human activities damage ecosystems, we must devote resources to supply these services ourselves
Example: if we kill off insect predators, farmers must use synthetic pesticides that harm people and wildlife

All life on Earth (including humans) depends on healthy, functioning ecosystems

One of the most important ecosystem services:
Nutrients cycle through the environment in intricate ways
Ecological processes provide services
Nutrient (biogeochemical) cycle
Nutrients move through the environment in complex ways
Matter is continually circulated in an ecosystem
Nutrient (biogeochemical) cycle: the movement of nutrients through ecosystems

Pool (reservoir): a location where nutrients remain for varying amounts of time (residence time)

Source: a reservoir releases more materials than it accepts

Sink: a reservoir that are accepts more than it releases

Flux: the rate at which materials move between reservoirs
-Can change over time
Humans affect nutrient cycling
Human activities affect nutrient cycling
Altering fluxes, residence times, and amounts of nutrients in reservoirs
Human activities affect nutrient cycling
Altering fluxes, residence times, and amounts of nutrients in reservoirs
The water cycle affects all other cycles
Water is essential for biochemical reactions and is involved in nearly every environmental system and cycle

Hydrologic cycle: the flow of liquid, gaseous, and solid water through the environment
Less than 1% is available as fresh water

Evaporation: conversion of liquid to gaseous water

Transpiration: release of water vapor by plants

Precipitation: rain or snow returns water to Earth’s surface

Runoff: water flows into streams, lakes, rivers, oceans
Water is also stored underground
Infiltration: water soaks down through rock and soil to recharge aquifers

Aquifers: underground reservoirs of spongelike regions of rock and soil that hold …

Groundwater: water found underground beneath layers of soil

Water table: the uppermost level of groundwater held in an aquifer
-Water in aquifers may be ancient (thousands of years old)
The hydrologic cycle
Human impacts on the hydrologic cycle
-Humans have affected almost every flux, reservoir, and residence time in the water cycle

-Damming rivers slows water movement and increases evaporation

-Removal of vegetation increases runoff and erosion while decreasing infiltration and transpiration

-Overdrawing surface and groundwater for agriculture, industry, and domestic uses lowers water tables

-Emitting air pollutants that dissolve in water changes the nature of precipitation and decreases cleansing
Carbon cycle
describes carbon’s route in the environment

-Carbon forms essential biological molecules
-Through photosynthesis, producers move carbon from the air and water to organisms
-Respiration returns carbon to the air and water
-Oceans are the se...
describes carbon’s route in the environment

-Carbon forms essential biological molecules
-Through photosynthesis, producers move carbon from the air and water to organisms
-Respiration returns carbon to the air and water
-Oceans are the second largest reservoir of carbon
Absorb carbon from the air, land, and organisms
-Decomposition returns carbon to the sediment, the largest reservoir of carbon
Ultimately, it may be converted into fossil fuels
Humans affect the carbon cycle
Burning fossil fuels moves carbon from the ground to the air
-Since mid-1700s, people have added over 275 billion tons of carbon dioxide to the atmosphere

Cutting forests and burning fields moves carbon from organisms to the air
-Less carbon dioxide is removed by photosynthesis

Today’s atmospheric carbon dioxide reservoir is the largest in the past 800,000 years
-The driving force behind climate change
The nitrogen cycle involves bacteria
Nitrogen makes up 78% of the atmosphere
It is contained in proteins, DNA, and RNA
It is also essential for plant growth

Nitrogen cycle: describes the routes of nitrogen through the environment

Nitrogen gas is inert and cannot be used by organisms
It needs lightning, bacteria, or human intervention to become biologically active and available to organisms
Then it is a potent fertilizer
Nitrogen must become biologically available
Nitrogen fixation: nitrogen-fixing soil bacteria or lightning “fixes” nitrogen gas into ammonium
Nitrogen-fixing bacteria live in legumes (e.g., soybeans)

Nitrification: bacteria then convert ammonium ions first into nitrite ions then into...
Nitrogen fixation: nitrogen-fixing soil bacteria or lightning “fixes” nitrogen gas into ammonium
Nitrogen-fixing bacteria live in legumes (e.g., soybeans)

Nitrification: bacteria then convert ammonium ions first into nitrite ions then into nitrate ions
Plants can take up these ions
Nitrite and nitrate also come from the air or fertilizers
Animals obtain nitrogen by eating plants or other animals

Denitrifying bacteria: convert nitrates in soil or water to gaseous nitrogen, releasing it back into the atmosphere
Humans greatly affect the nitrogen cycle

Industrial fixation
Historically, nitrogen fixation was a bottleneck: limited the flux of nitrogen from air into water-soluble forms

Industrial fixation fixes nitrogen on a massive scale
Overwhelming nature’s denitrification abilities

Excess nitrogen leads to hypoxia in coastal areas
Nitrogen-based fertilizers strip the soil of other nutrients
Reducing soil fertility
Burning forests and fossil fuels leads to acid precipitation, adds greenhouse gases, and creates photochemical smog
Phosphorus cycle
describes the routes that phosphorus takes through the environment
No significant atmospheric component
Most phosphorus is in rocks
With naturally low environmental concentrations, phosphorus is a limiting factor for plant growth
Weathering re...
describes the routes that phosphorus takes through the environment
No significant atmospheric component
Most phosphorus is in rocks
With naturally low environmental concentrations, phosphorus is a limiting factor for plant growth
Weathering releases phosphorus into water
Allowing it to be taken up by plants
Phosphorus is a key component of cell membranes, DNA, RNA, and other biochemical compounds
Humans affect the phosphorus cycle
Fertilizer from lawns and farmlands
Increases phosphorus in soil
Its runoff into water increases phytoplankton blooms and hypoxia
Wastewater containing detergents releases phosphorus to waterways
Controlling nutrient pollution in waterways
Reduce fertilizer use in farms and lawns
Change timing of fertilizer applications to minimize runoff
Manage livestock manure applications to farmland
Plant vegetation “buffers” around streams to trap runoff
Restore wetlands and create artificial ones to filter runoff
Improve sewage-treatment technologies
Restore frequently flooded lands
Reduce fossil fuel combustion
Conclusion
Life interacts with its abiotic environment in ecosystems through which energy flows and materials are recycled

Understanding biogeochemical cycles is crucial
-Humans are changing the ways those cycles function

Understanding energy, energy flow, and chemistry increases our understanding of organisms
-How environmental systems function

Thinking in terms of systems can teach us how to:
-Avoid disrupting Earth’s processes and to mitigate any disruptions we cause