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481 Cards in this Set

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Which fungus causes 75% of candidiasis?
Candida albicans
How many species of Candida are there?
More than 160
How many Candida species cause infection?
At least 13
Which Candida species most commonly cause infection?
Candida albicans (75%),
Candida krusei,
Candida parapsilosis,
Candida tropicalis
Is Candida albicans dimorphic?
No, the culture and tissue forms are not fundamentally different
Candida albicans histo
Oval yeast
Candida albicans in tissue
oval yeast with pseudohyphae and true hyphae
Which fungus forms germ tubes and under what conditions?
Candida albicans at 37 Celcius in protein solution
Is Candida albicans a primary or opportunistic pathogen?
Opportunistic
Candida albicans virulence factors
pseudohyphae
ability to adhere to epithelial surfaces
proteases, phospholipases, lipases
Host defenses against Candida albicans
Normal T cell function
normal flora
Where is Candida albicans usually found in the body?
normal flora of GI and vagina
What fungus is part of normal flora?
Candida albicans in GI and vagina
Dzs caused by Candida albicans
thrush,
vulvovaginitis,
esophagitis,
invasive candidiasis (esp. severe in neutropenics)
Candida albicans dx
culture and/or visualization (no Ab or Ag testing)
What are dermatophytes and where do they infect?
monomorphic mycelial fungi that infect only epidermis and its appendages (hair and nails)
Dzs caused by dermatophytes
ringworm of the scalp and body
jock itch
athlete's foot
paronchyia of the nails
How many genera of dermatophytes are there, what are they and where do they infect?
3:
Microsporum (hair and skin),
Trichophyton (hair, skin and nails),
Epidermophyton (skin)
What holds dermatophyte in check?
saturated fatty acids in mammalian sebum
What can dermatophytes do with keratin?
degrade and utilize it
Dermatophytosis dx
microscopic demonstration of mycelia in scrapings of skin lesion on standard fungal media
Is Cryptococcus neoformans a primary or opportunistic pathogen
Primary
Is Cryptococcus monomorphic or dimorphic?
Monomorphic
Crypto histo
round yeast
Crypto histo when grown in sexual state
mold
How many species of Crypto?
38
How many species of Crypto are pathogenic?
1: Crypto neoformans
Cryptococcus neoformans virulence factors
CAPSULE!
urease positive
phenol oxidase
can grow at 37-39 Celsius
produces mannitol
Which Crypto virulence factor contributes to brain edema in fungal meningitis?
mannitol
What is phenol oxidase?
Crypto virulence factor
converts phenolic compounds (catecholamines: dopamine, epi) to melanin, which accumulate in cell wall and protect vs. immune system
2 Crypto variants
Crypto neoformans neoformans: pigeons worldwide
Crypto neoforman gatti: eucalyptus trees in SoCal and Australia
How is Crypto acquired?
via inhalation
Dzs caused by Crypto neoformans
Pneumonia
Fungal meningitis
Which fungus can cause a meningitis that presents like hydrocephalus (N/V, CN defects)?
Crypto neoformans
Crypto host defenses
T cell mediated immunity
NK cells
Macrophages
Crypto dx
visualization (India ink of CSF), culture or latex agglutination test for Ag
What color is Crypto on Nigerseed agar?
black (melanin produced by phenol oxidase)
Are fungi prokaryotes or eukaryotes?
Eukaryotes
Eukaryotic features of fungi
80s ribosomes
membrane bound organelles
sterols in PM
nucleus with multiple linear chromosomes
Structure of fungi cell wall
Chitin, glucan and polysaccharide protein complexes
What is chitin?
linear polysaccharide composed of N-acetyl-D-glucosamine
(also exoskeleton of crustaceans)
What is glucan?
polymer of polymers of D-glucose
What is the most common polysaccharide in fungi's polysaccharide protein complexes?
Mannan, a polymer of D-mannose
What functions do fungi's polysaccharide-protein complexes serve?
Cement and immunodeterminant groups of cell wall antigens
How do fungi acquire nutrients?
heterotrophs, produce extracellular enzymes that break down organic material and absorb it
Are there any obligate anaerobic fungi?
No, there are facultative and obligate aerobic fungi, though
Are fungi motile?
No
What is dimorphism?
Existence in two different forms, for example, fungi that grow as a yeast in humans but a mold in lab
What is a thallus?
A visible colony of fungus
What is a hypha?
the principal element of mold, a tubular structure that grows by elongation into an intertwining mycelia, and may be divided into cells by septa.
Which form of mycelia bears conidiophores?
Aerial mycelia
What are pseudohyphae?
Elongated yeasts that resemble hyphae, but show constriction (not true septa) at the cell wall junctions. present in Candida albicans
Are monomorphic molds usually primary or opportunistic pathogens?
Opportunistic
What are the two major groups of monomorphic molds?
Aspergillus
Mucor and Rhizopus (Zygomycetes)
What makes Zygomycetes unique?
only fungi with non-septate mycelia,
asexual spores contained within sporangia borne on sporangiophores
What types of people do Zygomycetes cause dz in?
Uncontrolled diabetics and leukemics
Are dimorphic molds usually primary or opportunistic pathogens?
Primary
How can you grow dimorphic fungi in the yeast form in lab?
Grow on rich medium incubated at 37-40 celsius.
What are imperfect fungi
Fungi that we haven't figured out the reproductive cycle yet
How are fungi classified?
By morphology and reproductive structures formed during the asexual stage.
Do fungi reproduce sexually?
Yes
How do yeasts reproduce?
Budding, which leaves scars from the new cells breaking away from each other.
How do molds reproduce?
Spores, produced either asexually or sexually
What are sporangiospores and which species exhibit them?
spores that are contained in sporangia (sac-like structures), Mucor and Rhizopus
What are arthroconidia and which species exhibit them?
spores that develop directly in a hyphal segment and become barrel-shaped and double walled. Coccidioides
What are macroconidia and which species exhibit them?
Spores that are large, double-walled and multicellular, and develop within the hyphae or at the ends of hyphae. Histoplasma and dermatophytes
What is the most common fungus in the air?
Aspergillus
What features do the 4 most common primary pathogenic fungi share?
dimorphic, soil organisms, require a T-cell mediated immune response for self-limited infection
What are the 4 most common primary pathogenic fungi?
Histoplasma capsulatum
Blastomyces dermatitidis
Coccidioides immitis
Sporothrix schenckii
what type of conidia does Coccidioides produce?
Arthroconidia
Which fungi produces spherules with endospores?
Coccidioides immitis
Where is Coccidioides immitus found?
growing as a mold in the soil of the Southwestern US desert and Northern Mexico
How is Coccidioides acquired?
inhalation of airborne arthroconidia, transformation into a spherules of endospores inside lung
Can PMNs and macrophages kill Coccidioides spherules?
No, spherules can survive inside them
Dzs caused by Coccidioides immitis
Subclinical pneumonia
Disseminated dz (meningitis, bone, skin, other organs)
Meningitis (by itself)
Is a high titer of Coccidioides immitis Abs a good or bad sign?
Poor prognostic sign, sign of disseminated severe infection
What factors predispose to disseminated Coccidioides immitus dz?
Race (black, filipino)
pregnancy
immunocompromised (drug therapy, lymphoid malignancy, AIDS)
Coccidioides immitis dx
culture spherules from tissue (or ID in tissue)
positive Ab titer
hypersensitivity test (can be positive from prior dz, or negative due to anergy)
Does Coccidioides have conidiophores?
No, it has arthrospores within the mycelia
Histoplasma capsulatum conidia
Microconidia and tuberculate macroconidia (pathognomic)
Where is Histoplasma capsulatum found?
Soil contaminated with birds and bat feces, Ohio and Mississippi River Valley
How is Histoplasma acquired?
inhalation of microconidia
Can phagocytes kill Histoplasma?
No, Histoplasma can survive inside phagocytes
What is the most prevalent endemic mycosis in the US?
Histoplasmosis
Dzs caused by Histoplasma capsulatum
Acute pulmonary infections
Severe disseminated infections (most frequent to mucosa and GI tract)
Most cases are asx or self-limited
Factors predisposing to disseminated Histoplasma infection
age (infancy), immunosuppression, AIDS patients
Dx of Histoplasma capsulatum
culture/visualization, though conversion to yeast form may be req'd
rapid urine or serum Ag test
skin test
sometimes, high Ab titer
Is a high Histoplasma Ab titer a good or a bad sign?
Rarely, Ab titer can be used to dx it, but generally not a prognostic sign at all.
Blastomyces dermatitidis conidia
oval, pear-shaped conidia on short conidiophores
Histoplasma budding in tissue
narrow neck budding
Blastomyces budding in tissue
broad neck budding
Dz caused by Blastomyces
disseminated dz (skin, bones/joints, GU)
Dx of Blastomyces
visualization of yeast in tissue/culture
Where is Blastomyces found?
Central US (Great Lakes to Arkansas)- often hunters and woodsmen infected
How is Blastomyces acquired?
inhalation, though pneumonia is rare
Sporothrix schenckii conidia
triangular pigmented macrospores, in flower-like groups on short conidiophores
Yeast shape of Sporothrix
cigar shaped
Where is Sporothrix schenckii found?
soil enriched with vegetable matter, rose gardens, xmas tree farms
How is Sporothrix acquired?
Inoculation into the skin (different from the other primary pathogenic fungi!)
Dz caused by Sporothrix
"Alcoholic rose gardener's dz"
Ulcerated, erythematous nodule on skin with pus
subcutaneous nodules from spread up lymphatics
disseminated infection (RARE- only in severely immunocompromised)
Factors predisposing to Sporothrix infection
malnutrition, alcoholism, and immunosuppression,
Dx of Sporothrix
culture
What are the 3 medically important species of Aspergillus?
Aspergillus fumigatus (main pathogen)
A. flavus
A. niger
How can you differentiate the 3 Aspergillus species on slants of agar?
Fumigatus looks like cracked ice, flavus is fluffy (with visible mushrooms), niger grows black
Describe the hyphae of Aspergillus fumigatus
narrow septated hyphae with branches at ACUTE angles.
Aspergillus fumigatus conidia
conidia come off top half of conidiophore.
Aspergillus fumigatus histo
gray-green mature colonies
How is Aspergillus acquired?
inhalation (small spores reach the alveoli)
Dzs caused by Aspergillus fumigatus
invasive pulmonary infections
sinus infections
allergic pulmonary syndromes (esp. in asthmatics)
pulmonary aspergilloma (fungus ball) if pre-existing pulmonary cavity
Factors predisposing to Aspergillus fumigatus infection
neutropenia
steroids (inhibit macrophage killing)
chronic granulomatous dz (WBCs have defect oxidative bursts)
Host defense against Aspergillus fumigatus
PMN req'd to kill hyphae
Macrophages req'd to phagocytose and destroy spores
Dx of Aspergillus fumigatus
culture/visualization in infected tissue
serum assay for galactomannan (carb found in Aspergillus)
usually presumptive based on x-ray and fever in immunocompromised host on ABX
galactomannan
complex carbohydrate found in Aspergillus but not in all fungi
What are the zygomycetes?
mucor and rhizopus oryzae
Zygomycetes conidia
sporangia borne on sporangiophores
Dist. Rhizopus from Mucor
Rhizopus has roots, Mucor does not
How are the Zygomycetes acquired?
Inhalation
Dzs caused by Zygomycetes
rhinocerebral infarction in DKA patients
dz in other predisposed (immunocompromised) populations
Factors predisposing to Zygomycetes infection
Neutropenia
Diabetics (esp. in DKA)
AIDS, organ transplantation....
Why are diabetics predisposed to infection with Zygomycetes?
Zygomycetes produce a siderophore that scavenges for iron, which diabetics have in abundance due to impaired transferrin binding
What are the consequences of Zygomycetes sinus infection?
Rapid death (can spread sinus to sinus, to palate, turbinates, orbit and brain)
Sx of Zygomycetes sinus infection
acute sinusitis, fever, nasal stuffiness, purulent nasal discharge, HA, sinus pain
Sx of Zygomycetes infection spread
tissue necrosis of the palate, destruction of the turbinates, perinasal swelling, erythema and cyanosis of facial skin, black eschar in nasal mucose or palate
Are mycobacteria motile?
No
Are Mycobacteria anaerobic, aerobic, or facultative?
Obligate Aerobic
How long does it take to grow visible Mycobacteria colonies?
3 weeks (they are slow growers)
Instead of N-acetylmuramic acid, what does mycobacterium have it its cell wall?
N-glycolylmuramic acid
Are mycobacteria catalase positive?
Yes, except M. kansasii and INH resistant strains
Do mycobacterium tuberculosis have a capsule?
No, it is unencapsulated
Mycobacterium tuberculosis histo (acid fast stain)
Slim rods with Irregular beading due to vacuoles and polyphosphate granules (cord factor lets it grow in serpentine cords)
What are optimal conditions for mycobacterium tuberculosis growth?
37 degrees Celsius, 5-10% CO2, pH 6-7.6
Why is there confusion about the obligate aerobe status of Mycobacterium tuberculosis?
Because it has enzymes capable of anaerobic metabolism, that are not used in vivo.
How does Mycobacterium tuberculosis obtain iron?
Exochelin (takes iron from ferritin), and mycobacitin (in cell envelope, grabs iron solubilized by Exochelin)
Can mycobacterium tuberculosis grow on regular media?
No, it requires Lowenstein Jensen media (mint ice cream green colored)
Can Mycobacterium tuberculosis be detected by nucleic acid hybridization probes?
Yes
What is the doubling time of Mycobacterium tuberculosis?
18 hours
Tests to distinguish Mycobacterium tuberculosis from other mycobacteria
Niacin test (non-drug-resistant strains of M. tuberculosis produce lots of niacin)
Catalase test (M tuberculosis has a heat sensitive catalase, except some INH resistant strains)
Nitrate test (M. tuberculosis and M. bovis can reduce nitrate)
What is the Gen Probe MTD test?
Nucleic acid identification test for Mycobacterium tuberculosis
Is M. tuberculosis resistant to drying and most disinfectants?
Yes
Is M. tuberculosis resistant to formaldehyde and glutaraldehyde?
No
What is most of Mycobacterium's genome devoted to?
lipid synthesis and metabolism
Is M. tuberculosis resistant to highly polar inorganic acids and alkaline solvents?
Yes
Is M. tuberculosis resistant to UV and heat?
No. 2 hours in sun kills, it, 20-30 hours if in sputum.
Where does M. tuberculosis replicate?
Intraphagosomally!
Which bacteria kills guinea pigs?
M. tuberculosis
Which virulence factor is implicated in Mycobacteria's guinea pig killing?
catalase (b/c catalase negative strains are less virulent in guinea pigs)
What makes up M.tuberculosis' cell wall?
asymmetric lipid bilayer of mycolic acids covalently bound to arabinogalactans with shorter chain glycerolphospholipids, and an inner layer of PDG
How do you get PPD (purified protein derivative) from OT (old tuberculin)?
Run OT through an ammonium sulfate fractionation
M. tuberculosis virulence factors
cord factor (trehalose 6, 6 dimycolate)
catalase, peroxidase, lipoarabinomannan
sulfatides
What is the function of lipoarabinomannan in M. tuberculosis cell walls?
resist host cell oxidative response, induce cytokine production, prevent apoptosis
What virulence factors of M. tuberculosis contribute to granuloma formation?
mycolic acid glycolipids, cord factor, waxes D
How much of the world is infected with TB?
1/3
What is the typical source of infection of TB-infected people?
Cavitary lung dz from another person
What is the risk of TB infection proportional to?
the intensity of exposure
Does TB infection always lead to dz?
No, it usually does not, unless in infants or immunocompromised people.
Are TB cases in the US currently declining or rising?
Declining since 1992
Is Mycobacterium tuberculosis a zoonotic pathogen?
No, exclusively human.
Is Mycobacterium bovis a zoonotic pathogen?
Yes, it is acquired from ingesting meat or milk, and causes a dz in humans indistinguishable from TB
What is a tubercle?
A nodular, granulomatous structure with macrophages at the center, and monocytes, alveolar macrophages, lymphocytes, etc. around it
Does TB spread through the blood?
First, just in the peripheral lung, but then yes, the bloodstream and lymph nodes can both disseminate infection
Where does TB spread besides the lung?
Liver, spleen, kidney, bone, brain, meninges and other parts of the lung
Which immune cells are involved in immunity to TB?
alpha-beta CD4, CD8, gamma delta, and NK T cells
cytokines released in TB granuloma formation
IFN gamma, IL-1, IL-12, TNF-alpha (generally TH1)
What type of a hypersensitivity response is a positive PPD?
Delayed type hypersensitivity
What happens to TB hosts that can't launch a TH1 granulomatous response?
They develop milary TB
What % of TB granulomas reactivate the dz later?
less than 10%
What are Ghon complexes?
Calcified granulomas and draining lymph nodes (remnants of primary TB infection)
Does the necrosis from TB involve the bronchial wall?
Yes, and this can discharge bacilli and necrotic material into the airway
Risk factors for active TB after primary infection:
infants/young children and elderly
HIV-infected persons
IV drug users and Prison inmates
Homeless
Foreign born ppl from TB-endemic areas
Native Americans, Blacks, Latinos
Pregnancy
Post-measles
Alcoholism
End stage renal dz, DM, immunosuppressed
Where does TB reactivation occur in the lung?
Areas of high O2 tension and low lymphatic drainage (apices)
What is the Mantoux method?
Intradermal injection
What is considered a positive PPD?
>10mm in ppl with normal immune systems
>5mm in HIV ppl
If a person has been infected with a NTM, will they get a positive PPD?
Yes (ex. BCG)
Risk factors for TST (tuberculin skin test) anergy (false negative)
HIV with T cell count<200
acute viral infections (measles)
ppl with active miliary or disseminated TB (so place some other tests to check for general anergy)
TB dx
Culture (GOLD STANDARD)
Ziehl-Neelson stain showing acid fast bacilli
Nucleic acid assays
Tx of Latent TB Infection (LTBI)
INH over 6-9 months, 4-9 months of Rifampin
beware: increased risk of hepatitis in patients over 35 yo
What is BCG?
Bacillus of Calmette and Guerin, a low virulence M. bovis strain with variable evidencial support
Tx TB
INH, Rifampin, Ethambutol, Pyrazinamide for 8 weeks,
INH, Rifampin for 16 weeks more
"4 for 2 and 2 for 4"
How effective is TB tx?
Cures 95% of infections
How is TB resistance acquired?
Mutations, not plasmids
Which mutations are responsible for INH resistance?
25% mutation in catalase
75% mutation in enoyl-acyl carrier protein reductase (involved in mycolic acid synthesis)
Are NTM exclusively human pathogens, like M. TB?
No, they are environmental
Which bacteria cannot be cultured?
Mycobacterium leprosae
Where can Mycobacterium leprosae be grown?
armadillos or mouse footpads
What is optimal temp for Mycobacterium leprosae?
lower than core body temp, grows best by surviving in macrophages and Schwann cells in skin and superficial nerves
Where does Mycobacterium leprosae grow best in the infected body?
In macrophages and Schwann cells in skin and superficial nerves
What cell wall component is specific to Mycobacterium leprosae?
PGL-1, M. leprae-specific phenolic glycolipid
What cell wall component do Mycobacterium leprosae and tuberculosis share?
LAM (lipoarabinomannan)
What's Hansen's dz?
Leprosy
Incubation period for leprosy
5-7 years
How is M. leprosae transmitted?
Household contact, maybe mosquito or bed bug bite
What % of ppl infected with M.leprosae develop the dz?
10%
States with highest M. leprosae rates
CA, TX, NY, HI (immigrants from endemic areas)
Endemic leprosy areas
India, China, Brazil, Nigeria
Tuberculoid leprosy aka
Paucibacillary dz (since few of the bacilli are found in skin cultures)
Treatment for leprosy
Dapsone, Rifampin with or without clofazimine
Role of IFN-gamma in lepromatous granulomas
secreted by CD4 cells to stimulate macrophages to contain M. leprae growth
Role of IL-2 in lepromatous granulomas
secreted by CD4 cells to recruit more CD4 cells
Are CD8 cells present in a lepromatous granuloma?
Yes, on the periphery
Tuberculoid leprosy sx
anesthetic skin plaques, asymmetric peripheral nerve trunk involvement
Which form of leprosy has a poor cell-mediated response?
Lepromatous
What is the role of CD8 cells in lepromatous leprosy?
secrete cytokines that ENHANCE bacterial growth and inhibit CD4 function and expansion
Which form of leprosy produces well-formed granulomas?
Tuberculoid
What is the role of IL-4 in lepromatous leprosy infection?
secreted by CD8 cells, suppresses CD4 cell proliferation and function
Lepromatous leprosy sx
symmetric skin nodules, plaques, leonine (lion-like) facies, loss of eyelashes and body hair, loss of digits secondary to trauma, and testicular dysfcn (infertility)
Which dz causes leonine facies?
Lepromatous leprosy
Where is Mycobacterium ulcerans endemic?
wetlands of tropical and subtropical Africa, Western Pacific, Asia and South America
How is Mycobacterium ulcerans transmitted?
Unknown
What is the 3rd most common mycobacterial infection in immunocompromised ppl?
Buruli ulcer (m. ulcerans)
What causes Buruli ulcer?
M. ulcerans
How long does it take a Buruli ulcer to develop?
1-2 months
name the organism:single, small, painless, subq nodule on a limb expands to 15cm ulcerated nodule over months, with whole limb edema
M. ulcerans
What is a Buruli ulcer?
single, small, painless, subq nodule on a limb expands to 15cm ulcerated nodule over months, with whole limb edema
Does a Buruli ulcer yield inflammatory infiltrate/pus?
No!
Tx for Buruli ulcer
No antibiotics, wide surgical debridement (stop before greater disfiguring/deformity!)
Which mycobacteria species are not in the Runyon grouping?
M. leprae and M. ulcerans
How are NTM transmitted?
They are not, there's no human to human spread, people pick them up from the environment
What settings do NTM infections occur in?
trauma/surgical disruption, immunosuppression, or other underlying lung disorder
NTM Gram Stain
acid fast
Are NTM's genomes small or large?
Large
Are NTMs resistant to INH?
Yes, all of them.
NTM dx
acid fast staining, followed by culture (except M. leprosae) and/or 16s rRNA probes
Which MHC class displays NTM Ags
MHC Class II (After macrophage ingestion)
What cytokine do activated macrophages secrete to interact with T cells in a NTM infection?
IL-12
Which cytokine, released by T helper cells in the context of NTM infection, actually works AGAINST host response?
IL-6
The Runyon Classification System applies to...
NTM (Non Tuberculosis Mycobacterium)
Photochromogens are in which Runyon Class?
Runyon class 1
Scotochromogens are in which Runyon class?
Runyon class 2
Nonchromogens are in which Runyon class?
Runyon class 3
Rapid growers are in which Runyon class?
Runyon class 4
When do photochromogens produce pigment and what color?
Produce yellow-orange pigment when exposed to light
When do scotochromagens produce pigment and what color?
Produce yellow-orange pigment whether in light or dark
When do nonchromogens produce pigment and what color?
Never, N/A
What Runyon class is M. kansasii in?
Runyon 1: Photochromogens
What Runyon class is M. marinum in?
Runyon 1: Photochromogens
What Runyon class is M. scrofulaceum in?
Runyon 2: Scotochromogens
What Runyon class is M. avium intracellulare in?
Runyon class 3: Nonchromogens
What Runyon class is M. chelonae in?
Runyon class 4: rapid growers
What Runyon class is M. fortuitum in?
Runyon class 4: rapid growers
Are males and females equally infected by M. kansasii lung dz?
No, males more than females
Dz caused by M. kansasii
lung dz resembling TB
M. kansasii tx
Rifampin, Ethambutol, INH
Which NTM is NOT resistant to INH?
M. kansasii
M. kansasii histo
long, banded, beaded, "barber pole" yellow bacillus (pigment from beta carotene crystals)
Does M. kansasii reduce nitrate?
Yes, just like M. TB
Which NTM is antigenically similar to M. TB?
M. kansasii
Where are M. kansasii infections found?
Midwestern US, Louisiana, Florida and Texas, though possible anywhere
Is M. kansasii catalase positive?
Some strains, yes, some nonpathogenic strains are not.
Dz caused by M. marinum
"swimming pool granulomas"
"fish fancier's finger"
abscesses at sites of abrasion
Are M. marinum infections self-limited?
No, they don't heal well and last for weeks to months, responding slowly to treatment
Does M. marinum grow better at high or low temperatures?
Low, this is why it grows on sites of abrasion
Does M. marinum inhabit fresh or salt water?
Both
Is M. marinum zoonotic?
Yes, it infects many marine organisms
M. marinum tx
No standard treatment
1-4 months of rifampin, ethambutol, doxycycline, trimethoprim-sulfamethoxazole
surgically debride deep hand wounds
Dz caused by M. scrofulaceum
scrofula (granulomatous cervical adenitis, usually in children)
How does M. scrofulaceum enter the body?
Through the oropharynx and draining lymph nodes
M. avium intracellulare (MAC) complex histo
pleomorphic acid fast rods
Dzs caused by MAC
TB-like lung dz (in white, middle-aged smokers with COPD or bronchiectasis),
Lung infiltrates (in ppl with bronchiectasis from old TB or CF),
Persistent cough and interstitial changes in right middle lobe or lingula (in non-smoking women over 50)
MAC dx
sputum for AFB smear and culture
What is the most common cause of cervical lymphadenitis in children?
Scrofula
What is the most common NTM seen in HIV/immunosuppressed people? (presents as intermittent/persistent fever, fatigue, malaise, anorexia and weight loss, potentially anemia, diarrhea, ab pain, cough)
MAC
Is MAC a zoonotic organism?
No, it lives in soil and water and the environment
What mechanisms does MAC have against macrophages?
MAC can impair the superoxide anion production within the macrophage, AND inhibits phagolysosomal fusion
Which is easier to cure: TB or MAC?
TB. MAC patients typically need to be treated for prolonged periods.
How do you serotype MAC?
Sugars (there are 30 types, only a few are pathogenic)
How is M. avium different from M. intracellulare
M. avium is the name for MAC infecting immunocompromised people, whereas M. intracellulare infects normal healthy hosts
How can you distinguish between M. avium and M. intracellulare?
16S rRNA probes, though this is rarely done
MAC tx
Prophyllaxis when T cell <50: Azithromycin 1200mg q week or clarithromycin qday.
Treat active dz: Clarithromycin or Azithromcyinm, ethambutol, maybe Rifabutin
How long does it take NTM rapid growers to make colonies?
5 days
When do M. chelonae and M. fortuitum infect?
post surgery, though rare cases happened post injury with contamination
What are M. chelonae and M. fortuitum resistant to?
Almost everything
What are M. chelonae and M. fortiutum sensitive to?
Clarithromycin, Amikacin, Sulfonamides and Imipenem are the best bets
Dz caused by M. chelonae and M. fortuitum
Infections of soft tissue, lung, bone, CNS, eye (keratitis, rarely)
Legionella histo
Gram negative, difficult to stain
Legionella metab
facultative intracellular (though can be cultured on agar)
How many species of Legionella?
40
Most important species of legionella
L. pneumophil (15 serotypes) most impt.
L. micdadei 2nd most impt.
Will Legionella grow on conventional agar?
No
What kind of agar does Legionella require?
Buffered (pH 6.9) Charcoal Yeast Extract Agar (contains iron and cysteine)
What factors does Legionella require for growth?
Iron and cysteine
Is Legionella catalase positive or negative
Positive
Is Legionella gelatinase positive or negative?
Positive
Does Legionella have a beta-lactamase?
Yes
Is Legionella susceptible to beta lactams?
No, it has a beta-lactamase
Is Legionella motile or nonmotile?
Motile
What is found in large numbers when Legionella is put through gas-liquid chromatography?
branched-chain fatty acids
Where does Legionella pneumophila multiply?
Intracellularly in alveolar macrophages and monocytes
What is coiling phagocytosis?
Legionella pneumophile's uptake by alveolar macrophages and monocytes.
legionella's C3 attaches to phagocyte's complement receptors, and coils the membrane in with it, arranging the receptors.
How are the cell membrane receptors rearranged upon coiling phagocytosis?
concentrates complement receptors in the phagosome, excludes MHC class I (marker of PM), MHC class II and transferring receptors (markers of endosome) and CD64, LAMP 1 and 2 (markers of the lysosomes).
What are markers of the PM that are excluded from the phagosome by Legionella in coiling phagocytosis?
MHC Class I
What are markers of the endosome that are relocated to the PM by Legionella in coiling phagocytosis?
MHC Class II and transferrin receptors
What are markers of the lysosomes that are relocated to the PM by Legionella in coiling phagocytosis?
CD63, LAMP1 and 2
What cell membrane components are concentrated in the phagosome during coiling phagocytosis?
complement receptors
Do Legionella-filled vesicles undergo acidification and phagolysosomal fusion?
No, this is inhibited
What cell structures gather around a legionella-filled phagosome?
ribosomes, smooth vesicles and mitochondria
What forms the channel through inner and outer bacterial membrane in legionella infection?
icm/dot gene products
What is the doubling time of Legionella?
2 hours
How many times does Legionella replicate intracellularly?
As many times as possible until the host cell is destroyed.
What is the primary host defense against Legionella infection?
Cell mediated immunity
How do lymphocytes participate in host response to Legionella infection?
Lymphocytes become sensitive to Legionella and secrete cytokines that activate macrophages
How do macrophages participate in host response to Legionella infection?
Macrophages are activated by cytokines from lymphocytes, downregulate the complement receptor to limit the uptake of Legionella, and IFN-gamma activates monocytes to limit iron availability by down-regulating transferrin receptors, iron uptake and intracellular ferritin concentrations
How do PMNs participate in host response to Legionella infection?
release apolactoferrin (when endocytosed by monocytes, helps limit iron available to Legionella)
How do humoral immunity/Abs participate in host response to Legionella infection?
They are not effective, Legionella resists killing by Ab and complement. Ab actually works against the host by promoting uptake of L. pneumophil by macrophages
Can Legionella be killed by Ab and complement?
No, Abs actually help L. pneumophila uptake by macrophages
Where are legionella infections found (geographically)?
Worldwide
What is the most likely time of year to get a Legionella infection?
Summer (air conditioners!)
Risk factors for legionella infection
Age>30,
men>women
immunocompromised
cigarette smoking
alcohol abuse
Are most Legionella infections fatal or nonfatal?
Most are mild.
How is Legionella transmitted?
Inhaled from mist, no person-to-person or fomite spread
Sources of legionella
air-conditioning equipment
respiratory therapy devises
shower heads
whirlpools
mist generators
Is Legionella zoonotic?
yes, unicellular aquatic organisms are thought to be its reservoir.
Is asx Legionella infection associated with a high or low Ab titer?
High Ab titer
Dzs caused by Legionella
Asx infection (high Ab titer)
Legionnaire's Dz
Pontiac fever
What is the incubation period of Legionnaire's dz?
2-10 days
What is the incubation period of Pontiac fever?
1-2 days
Stages of Legionnaire's dz
incubation 2-10 days
Stage 1: mild flu-like illness
Stage 2: mod. severe pneumonia
Stage 3: multilobar pneumonia (often severe and fatal- 5-30%)
What is the mortality rate from severe Stage 3 legionnaire's dz?
5-30%
Sx of Pontiac fever
mild fever
Dx Legionella (gold standard! and others)
culture Legionella from sputum, pleural fluid and blood.
Also available: fluorescent staining or gene probe of sputum/tissue, ELISA for Ag in urine, retrospective serology
Tx Legionella
community acquired: erythromycin or long-acting macrolides
Immunocomp or hospitalized: Azithromycin or fluoroquinolone
Does L. pneumophila make protective Abs?
It has been demonstrated in guinea pig vaccines.
Characteristics differentiating atypical pneumonia
insidious onset
lower fevers
less localized consolidation on CXR
Most common organisms causing Atypical pneumonia
Mycoplasma pneumoniae
Chlamydia pneumoniae
Legionella pneumophile
What ABX do atypical pnuemonias respond to?
Doxycycline
Erythromycin
Most common organisms causing typical pneumonia
Strep pneumo
Haemophilus influenza
Klebsiella pneumoniae
Which intracellular pathogens live in the phagolysosome?
Coxiella brunetti
Leishmania
Which intracellular pathogens live in the cytosol?
Rickettsia
Shigella
Listeria monocytogenes
Which intracellular pathogens live in phagosome (and prevent phagolysosomal fusion)?
Mycobacterium tuberculosis
Ehrlichia
Chlamydia
Legionella
Toxoplasma gondii
Which intracellular pathogen adheres to endothelial cells and is engulfed, but can be grown on special media?
Bartonella
Rickettsia, Coxiella, Ehrilichia and Bartonella histo
Gram negative but requires Giminez/Giemsa/Macchiavello stain,
What is the vector of Family Rickettsiaceae?
arthropod
Arthropod characteristics
articulated exoskeleton, insects (6 legs) and arachnids (8 legs)
mechanical vector borne transmission
a vector transmits pathogen from 1 host to another, but is not essential in the life cycle of the pathogen
biological vector borne transmission
vector is essential to life cycle of the pathogen it carries (pathogen develops or multiplies in the body of the vector)
Transovarian transmission
infection of all progeny via their infected mother
Transtadial transmission
infection throughout different life stages (even when metamorphically different!)
What time of year are arthropod borne diseases more prominent?
Summer (lots of bugs, lots of people outside)
Why is an arthropod reservoir an advantage for an intracellular pathogen like Rickettsia?
Rickettsia shows transovarian transmission and arthropods have very large numbers of progeny
Typhus group of genus Rickettsia consists of
R. prowazekii
R. typhi
Spotted fever group of genus Rickettsia consists of
R. rickettsii
How are the typhus group and spotted fever group of genus Rickettsia differentiated?
Serologically by LPS reactivity on IFA
What genus was Orientia tsutsugamushi a former member of?
genus Rickettsia
How does Rickettsia species disseminate?
Disseminate via bloodstream, parasitize endothelial cells
Dzs caused by endothelial cell damage by Rickettsia
Vasculitis,
Obstruction,
Capillary leaks,
Thrombosis,
Rash (incl. palms and soles),
Organ damage,
Shock
Clinical triad of Rickettsia/Rocky Mountain Spotted Fever
fever
HA
rash
If you suspect a Rickettsial infection, should you confirm the diagnosis?
Treat first, then serologically confirm dx. untreated has high mortality rate!
Rickettsia tx
Tetracyclines,
long acting macrolides,
fluoroquinolones
(anything that can reach a therapeutic intracellular concentration)
How do Rickettsia and Orientia adhere to endothelial cells?
adhere to XOL receptors via a slime layer
How do Rickettsia and Orientia escape from the phagosome?
Phospholipase
How do Rickettsia and Orientia get out of the cell in order to infect the next one?
They subvert actin and propel themselves to the end of the cell, protrude and infect the next cell. OR they lyse the cell, releasing Rickettsia to be taken up by other cells
What components of host defense act against Rickettsia?
Humoral and cell-mediated (activated macrophages kill Ab-coated extracellular Rickettsia)
What is the agent of epidemic typhis?
Rickettsia prowazekii
What is the agent of endemic (murine) typhus?
Rickettsia typhi
What make provoke an epidemic of typhus?
War, famine
How is R. prowazekii transmitted?
person to person VIA body louse vector
What are reservoirs of R. prowazekii?
humans
flying squirrels
Is the body louse (pediculus humanus) a reservoir of R. prowazekii?
No, it dies of the infection, so humans and flying squirrels are the reservoirs and body louse is the vector
Overall mortality of epidemic typhus (untreated)
40%
Dzs caused by R. prowazekii
epidemic typhus
Brill-Zinsser dz
What is Brill-Zinsser dz?
a mild illness caused by reactivation of dormant R. prowazekii
Where in the US is endemic (murine) typhus seen?
California/Texas border regions, Hawaii
What are the most important vectors for Rickettsia typhi in the US?
Rats, opossums and rat fleas
What are vectors of Rickettsia typhi in the US?
Cats, rat fleas
Mortality of endemic (murine) typhus untreated
2%
What causes Rocky Mountain Spotted Fever?
Rickettsia rickettsii
What are the vectors of Rickettsia rickettsii?
ticks of Dermacentor species
Which US states have highest rates of Rocky Mountain Spotted fever?
Oklahoma and North Carolina
What are the reservoirs of Rocky Mountain Spotted Fever?
ticks (transovarian and transtadial passage), various mammals
What time of year are Rickettsia rickettsii infections most likely?
Summer
What is SIRS?
Systemic Inflammatory Response Syndrome: a widespread inflammatory response to a variety of severe clinical insults.
SIRS consists of 2+ of:
1. Temperature >38 or <36
2. Heart rate >90 bpm
3. Respiratory rate >20 breaths/min, or PaCO2 <32mmHg
4. WBC>12,000 cells/mm3, <4000cells/mm3 or >10% immature/bands
Sepsis
systemic response to infection (SIRS plus evidence of infection)
Severe sepsis
sepsis plus organ dysfunction,
hypoperfusion, or
hypotension
Clinical manifestations of hypoperfusion
lactic acidosis,
oliguria,
acute alteration in mental status,
etc.
A septic patient requires inotropic or vasopressor support, despite adequate fluid resuscitation. Are they considered to be in septic shock?
Yes
septic shock
sepsis with hypoTN despite adequate fluid resuscitation, combined with perfusion abnormalities (lactic acidosis, oliguria, acute alteration in mental status, etc.).
hypotension
systolic BP<90mmHg, or a reduction of >40mmHg from baseline (in the absence of other causes for the fall in BP)
multiple organ failure
presence of altered organ function in an acutely ill patient such that homeostasis cannot be maintained without intervention
Sx of septic shock (in addition to SIRS and signs of infection)
Feeling of impending doom,
Organ damage (liver, kidney, lung, heart, gut)
DIC- disseminated intravascular coagulation,
Activation of neuroendocrine axis,
Cytokine induction (IL-1, 6, 10, 12, TNF and others)
Which cytokines are induced in septic shock?
IL-1, 6, 10, 12, TNF and others
What % of patients with septic shock have bacteremia?
50%
What % of septic shock patients with +blood cultures grow gram negative rods?
35%
What % of septic shock patients with +blood cultures grow gram positive organisms?
35%
What % of septic shock patients with +blood cultures grow a mixed infection?
19%
What % of septic shock patients with +blood cultures grow fungi?
13%
Can the site of infection help you predict clinical outcome in septic shock patients?
Yes
Is the source of septic shock infection usually endogenous or exogenous?
Endogenous
Most common sites of infection leading to septic shock
lungs
abdomen
urinary tract
Is the incidence of sepsis increasing or decreasing?
Increasing
What factors contribute to the increasing incidence of sepsis?
Aggressive oncological therapy,
widespread corticosteroid and immunosuppressant use,
antimicrobial resistance,
increased use of invasive devices,
longer lives of the predisposed (elderly, diabetics, cancer patients)
Why is it difficult to do a good sepsis study (to identify a good treatment)?
patients are heterogeneous,
multiple triggers,
therapies may be trigger-specific,
multiple cytokines involved, blocking one has little effect.
Therapies for septic shock that have been tried and failed include:
Anti-inflamm. meds,
anti-endotoxin therapy (monoclonal Abs to lipid A),
anticytokine therapy (IL-1inhibitors, TNF inhibitors),
iNOS inhibitors
mainstay of septic shock therapy
appropriate antibiotic therapy,
good quality ICU care,
careful attention to fluids and pressors
Early in sepsis, which is dominant, pro-inflammatory or anti-inflammatory?
Pro-inflammatory is dominant
Late in sepsis, which is dominant, pro-inflammatory or anti-inflammatory?
Anti-inflammatory becomes dominant
What about the anti-inflammatory dominant state post-sepsis predisposes patients to opportunistic infections?
Immune cells apoptosis
Early in sepsis, which is dominant, coagulation or fibrinolysis?
Coagulation is dominant
The initial pro-inflammatory response to sepsis includes what cytokines?
TNF, IFN-gamma, IL-1, IL-6, IL-12
In early sepsis, how are coagulation proteins activated?
by TF expression on macrophages and endothelial cells
In early sepsis, how is fibrinolysis inactivated?
By loss of activated protein C and thrombomodulin from endothelial cells
What causes the relaxation of arteriolar SM in early sepsis?
iNOS transcriptional activation
Is complement involved in sepsis?
Yes, it is activated in early sepsis
What anti-inflammatory cytokines/inhibitors are released by the body in response to a pro-inflammatory septic response?
IL-10, soluble TNF receptors, IL-1 receptor type 1, IL-1 receptor antagonist
What is the mortality rate from septic shock?
30-50%
In septic shock, which organs may be affected and how?
Lungs: ARDS
Kidneys: Acute tubular necrosis
Liver: hepatitis
Heart: decrease contractility
Brain: confusion
What are PAMPs?
Pathogen Associated Molecular Patterns
What bacterial products set off the systemic cascade that results in septic shock?
LPS/endotoxin
PDG
Bacterial lipoproteins
Mycobacterium tuberculosis lipoproteins and lipoarabinomannan
Flagellin
Heat shock proteins
What is the most common and most potent bacterial potentiator of sepsis?
LPS
What does TLR-2 interact with?
PDG
bacterial lipoproteins
lipoteichoic acid
fungal glycan
What does TLR-4 interact with?
LPS, heat shock proteins
What does TLR-5 interact with?
flagellin
Which cells respond in sepsis?
Macrophages, PMNs, Endothelial cells and Epithelial cells
How many macrophage genes are transcriptionally activated by microbial products?
over 100 genes
What mediators do macrophages secrete in response to sepsis?
IL-1, 6, 8, 10, 12, GMCSF, TNF, reactive O2 intermediates, PAF, LTs
What macrophage cell membrane components are upregulated in sepsis?
MHC, ICAM, VCAM, Tissue Factor
Besides genes, mediators and cell membrane components, what else is upregulated in macrophages in sepsis?
Upreg of the respiratory burst through the induction of inducible nitric oxide synthetase (iNOS)
What is required for an endothelial cell response to sepsis?
Soluble CD14
What causes endothelial cells to upregulate integrins in sepsis?
Inflammation, IL-1 and TNF
Which integrins do endothelial cells upregulate in sepsis?
ICAM, VCAM and ELAM
Which cytokines/mediators do endothelial cells produce in sepsis?
IL-1, 6, 8, TNF, endothelin, PGs
What relation do endothelial cells have with muscular response to sepsis?
iNOS is upregulated in endothelial cells, producing NO that diffuses to arteriolar SM causing relaxation and low SVR (systemic vascular resistance)
What happens to tight junctions between endothelial cells in sepsis?
Tight junctions loosen
Which cells apoptose in sepsis?
Immune cells (leaving patient predisposed to opportunistic infections), and endothelial cells (which can lead to irreversible organ damage)
What is upregulated in epithelial cells in sepsis?
VCAM, ICAM, IL-1, IL-6, TNF
Which cytokines engage in a positive feedback loop in epithelial cells during sepsis?
IL-1 and TNF
Which types of epithelial cells respond to LPS?
Bladder and respiratory epithelial cells
Which set of signal transducing receptors is highly conserved between species (i.e. between fruit flies and humans)?
TLRs
How does TLR-4 binding to LPS lead to transcriptional activation of genes?
TLR4 complexes with CD14 and MD2 (extracellular molecule associated with TLR4), and when it binds LPS, it phosphorylates specific transmembrane tyrosines that activate intracellular signaling cascades leading to transcriptional activation
Which immune cell receptors or plasma proteins bind LPS?
TLR4, CD14, and LBP (LPS binding protein)
What is LBP
LPS binding protein, 60kD acute phase plasma protein that tightly binds LPS and enhances cell responses by catalzying CD14's binding to LPS
In sepsis, are levels of LBP increased or decreased?
Usually LBP = 5 microg/mL
In sepsis, LBP>100 microg/mL
What is CD14?
CD14 is a 55kD glycoprotein, present in cell surface (GPI-anchored in macrophages and neutrophils, no TM domain) and plasma (as sCD14), that binds many things and serves as a pattern recognition receptor.
What can CD14 bind?
LPS, PDG, heat shock proteins among other things
Is LBP produced by immune cells?
No (I think), it is found in the plasma.
Does CD14 transmit an intracellular signal?
No, it is a pattern recognition receptor that allows immediate response to invasion by bringing bacterial Ags to the membrane of macrophages and neutrophils.
What causes scrub typhus?
Orientia tsutsugamushi
Dz caused by Orientia tsutsugamushi
scrub typhus
Where is Orientia tsutsugamushi found?
Asia Pacific rim
What is Orientia tsutsugamushi's vector?
Chiggers- larval stage of trombiculid mites
What is Orientia tsutsugamushi's reservoirs?
Chiggers- larval stage of trombiculid mites (transovarial passage)
Rodents
Which drugs have Orientia tsutsugamushi shown resistance to?
Doxycycline and chloramphenicol
Dz caused by Coxiella brunetti
Q fever (query fever)
Acute: pneumonia, sometimes with pericarditis a/o myocarditis or HA
aseptic meningitis a/o encephalitis
Chronic: endocarditis and hepatitis
How does Coxiella brunetti survive adverse environmental conditions?
obligate intracellular parasite with a "spore-like" body that resists drying and other environmental conditions
How is Coxiella acquired?
inhalation, or ticks
What are reservoirs of Coxiella?
sheep and cattle
Where in the body does Coxiella concentrate?
Placenta
Where does Coxiella replicate?
within the phagolysosome (where it lives)
Ehrlichia histo
obligate intracellular Gram negative bacteria
Do Ehrlichia have LPS?
No
What differentiates Ehrlichia from Rickettsia?
Ehrlichia can make ATP
Ehrlichiosis resembles what other dz?
Rocky Mt Spotted Fever (RMSF), except most patients don't get the rash
What is the mortality rate for Ehrlichiosis?
1-3%
Ehrlichiosis tx
doxycycline, before you've even confirmed the diagnosis
What type of illness does not require laboratory confirmation before treatment is indicated?
Rickettsial dz
Ehrlichiosis sx
undifferentiated fever with potential complications such as
meningoencephalitis,
ARDS,
toxic shock-like illness
Types of Ehrlichiosis
HME - human monocytic ehrlichiosis
HGE/HGA - human granulocytic ehrlichiosis/anaplasmosis
What causes HME?
Ehrlichia chaffeensis infects monocytes, causes leukopenia
Where does HME occur?
Rural southeastern and south central regions of the country
What is HME's reservoir?
white tailed deer
What is HME's vector?
lone star tick ("Amblyomma americanum")
What causes HGE/HGA?
Anaplasma phagocytophilum infects granulocytes, causes leukopenia
What is HGE/HGA's vector?
ticks of the Ixodes species
What is HGE/HGA's reservoir?
small mammals such as mice (Peromyscus leucopus)
What types of patients get fulminant dz from Ehrlichia?
immunocompromised, elderly, those lacking spleens (asplenic)
Dzs caused by Bartonella
B. henselae - cat scratch dz
B. henselae and B. quintana- bacillary angiomatosis in AIDS patients
B. quintana- trench fever
B. bacilliformis - Carrion's dz
How is Bartonella henselae acquired?
scratch of a young cat
What is the vector of Bartonella henselae?
Fleas between cats, cats to humans
What type of cells does Bartonella henselae invade?
Endothelial cells
Sx of cat scratch dz
low grade fever
malaise
painful, tender lymph node
Best stain for visualizing Bartonella
silver stain
What culture conditions does Bartonella require?
specific media and 5% CO2. slow growth
What species of Bartonella cause bacillary angiomatosis in AIDS patients?
B. henselae and B. quintana
What is the mechanism of Bacillary Angiomatosis?
Bartonella spreads to angioblasts, causes angioproliferation and hemangioma-like lesions in the liver and spleen or skin and bone (different species affect different organs)
When did B. quintana "trench fever" epidemics occur?
WWI
Who does B. quintana affect currently?
Homeless individuals, esp. chronic alcoholics
What is B. quintana's vector?
Human body louse
What is the vector of B. bacilliformis (Carrion's dz)?
sandflies of the Phelobotomus genus
Where is B. bacilliformis endemic?
Andean regions of Peru, Colombia and Ecuador
what is the course of Carrion's dz?
Biphasic-
acute septicemic phase (Oroya fever) and chronic verruga peruana phase
Sx of Oroya fever
fever, HA, anorexia, malaise.
lasting several days to a few weeks.
acute septicemic phase of Carrion's dz
Sx of verruga peruana
eruptive hemangioma-like skin nodules.
chronic phase of Carrion's dz