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181 Cards in this Set

  • Front
  • Back
Define matter, and list its three forms.

Matter has mass and occupies space.


92 naturally occurring elements make up matter.


3 forms: Solid, Liquid, and Gas.

Describe and differentiate among the subatomic particles that compose atoms.

Neutrons: No charge


Protons: Postive charge (+)


Electrons: Negative Charge (-), located in varying distance from the nucleus in regions called orbitals.

Explain the arrangement of elements in the periodic table based on atomic number.
Chemical symbol

-Unique to each element (Usually identified by first letter, or first letter plus an additional letter, e.g., C is carbon)


Atomic number


-Number of protons in an atom of the element (Located above symbol name)


-Elements arranged by anatomic number within rows


Average atomic mass


-Mass of both protons and neutrons (Shown below the element’s symbol on the table)

Describe an isotope.

1 or 2 or more atoms that have the same atomic number (the same number of protons) but a different number of neutrons.

Explain how radioisotopes differ from other types of isotopes.

The difference is that radioisotopes are very unstable and contain high levels of nuclear energy and emit this energy in the form of nuclear radiation.

Describe how elements are organized in the periodic table based on the valence electron number.

An element's location in the periodic table is largely dependent on its electrons; the number of valence shell electrons determines it is a group, and the type of orbital in which the valence electrons lie in determines the element's block.

State the octet rule.

The octet rule says that atoms like to have full outer shells of only eight electrons. Atoms will lose or gain valence electrons to make their outer shells full with eight electrons, and they do this by bonding with other atoms.

What are the major elements that compose 98% body weight?

Oxygen(65%), Carbon(18%), Hydrogen(10%), Nitrogen(3%), Calcium(1.5%), and Phosphorus (1%).

What are the minor elements that compose less than 1% body weight?

Sulfur (0.25%), Potassium (0.20%), Sodium (0.15%), Chlorine (0.15%), Magnesium (0.05%), and Iron (0.006%).

How do you determine the number of subatomic particles for protons? Neutrons? Electrons?

Proton number = atomic number



Neutron number = atomic mass – atomic number


--Neutron number = (p + n) – p


--Neutron number of Na = 23 – 11 = 12




Electron number = proton number

What are negatively charged ions called?




What are some common anions?

Anions




Chloride Ion, Bicarbonate ion, and Phosophate ion.

What is a positive charged ions called?

Cations

Polyatomic Ions are?

anions with more than one atom




(ex. bicarbonate ion and phosphate ion)

Atoms with 1, 2, or 3 electrons in valence shell become _________.

Cations.




*Reaches stability by donating 2 electrons. (Develops a charge of +2)

Atoms with 5, 6, or 7 electrons become _________.

Anions.




*Reaches stability by gaining 1 electrons. (Develops a charge -1)

Elements on the left side of the periodic are called?




The tend to lose ____.

Metallic side.




Electrons.



Elements on the right side of the periodic are called?




They tend to gain _____.

Nonmetallic side.




Electrons.

What is an ionic bond?

Cations and anions bound by electrostatic forces.




=Form Salts

Formation of an Ionic bond involve _____ and ______.

Sodium and Chloride.

What is the charge for a magnesium ion, based on its position in the periodic table?

Magnesium is in group 2A.


It has two outer or valence electrons in a 2s subshell. These two electrons can be removed relatively easily. The cation has a charge of +2 just like calcium.

Could an ionic bond form between two cations?

No, an ionic bond could not be created between two cations. Cations such as H+ have no electron to pass to each other, and therefore cannot great a bond.

Define a molecular formula.

a formula giving the number of atoms of each of the elements present in one molecule of a specific compound.



Ex. C6H1206

Describe a structural formula, and explain its use in differentiating isomers.

Shows # and types of atoms


Shows their arrangement w/in the molecule


Provides a means for differentiating isomers


-Molecules w/ the same # and kinds of elements arranged differently in space(glucose, galactose, fructose)

Describe a covalent bond and explain its formation based on the octet rule.

Covalent bond: atoms share electrons



Occurs w/ atoms that have four to seven electrons in their outer shell, they share to make shell full.

List the four most common elements in the human body.

Four elements most commonly form covalent bonds:


Oxygen


Carbon


Hydrogen


Nitrogen

Distinguish between single, double, and triple covalent bonds.

Single: A pair of electrons are shared(2 H atoms)


Double: Two pairs of electron are shared(2 O atoms)


Triple: Three pairs are shared (2 N atoms)

Explain polar and nonpolar covalent bonds.

Polar: They are partially charge, one charge may be stronger than the other, unequal sharing


Nonpolar: Equally charged, equally shared

Describe the difference between a nonpolar molecule and a polar molecule.

Polar: unequal sharing. H2O


Nonpolar: equal sharing. CO2

Define an amphipathic molecule.

Polar in one region and nonpolar in another.


Phospholipids; Hydro Phillic and Phobic

Describe the hydrogen bonding between polar molecules.


Attraction b/w partially positive hydrogen atom and partially negative atom



Individually weak, collectively strong

List and define the intermolecular attractions between nonpolar molecules.

van der Walls forces: electrons orbiting nucleus briefly, unevenly distributed



hydrophobic interactions: nonpolar placed in polar substance

What is a covalently bonded molecule?

Electrons shared between atoms of two or more different elements.



Termed molecular compounds.




E.g., carbon dioxide (CO2), but not molecular oxygen (O2)

What is a molecular formula?

Indicates number and type of atoms.



E.g., carbonic acid (H2CO3)

What is a structural formula?

Indicates number and type of atoms.

Indicates arrangement of atoms within the molecule.


E.g., O=C=O (carbon dioxide).


Allows differentiation of isomers


Same number and type of elements, but arranged differently in space

Glucose vs. Galactose vs. Fructose

Same molecular formula.



6 carbon, 12 hydrogen, 6 oxygen.




Atoms arranged differently

What information about a molecule is gained by a structural formula?How does this differ from a molecular formula?


The molecular formula exhibits the type and number of atoms in a molecule; the structural formula also provides information on how the atoms are arranged.

What is an isomer?

Isomers are molecules composed of the same type and number of elements, but are arranged differently.

What is a covalent bond?

Atoms share electrons.

Occurs when both atoms require electrons.


Occurs with atoms with 4 to 7 electrons in outer shell.

What are the most common elements used to form covalent bonds in the body?

Hydrogen, Oxygen, Nitrogen, and Carbon.

Oxygen needs ___ electrons to complete the outer shell. It forms ___ covalent bonds.

2.




2.

Nitrogen forms _____ bonds.

3.

Carbon forms ____ bonds.

4.

The simplest covalent bond an atom is able to form occurs between ______ _______ atoms.

2 hydrogen.

What is a single covalent bond?

One pair of electrons shared.



E.g., between two hydrogen atoms

What is a double covalent bond?

Two pairs of electrons shared.



E.g., between two oxygen atoms

What is a triple covalent bond?

Three pairs of electrons shared.



E.g., between two nitrogen atoms

Carbon needs ____ electrons to satisfy the _____ rule.




What are the most commonly known formations?

4. Octet.




Methane (CH4), Carbon Dioxide (CO2), and Ethanol (C2H5OH).

What is a carbon skeleton formation?

Bonds in straight chains, branched chains, or ring.



Carbon present where lines meet at an angle




Additional atoms are hydrogen

What is electronegativity?

Electronegativity—relative attraction of each atom for electron.



Determines how electrons are shared in covalent bonds




Two atoms of same element have equal attraction for electrons




Resulting bond is nonpolar covalent bond Sharing of electrons unequally = polar covalent bond

In the periodic table, electronegativity increases ___________ acrosses the row, _______ in the column.

Left to right.




Bottom to top.

What the most common elements composing living organisms?




List them from least to greatest electronegativity.

Oxygen, nitrogen, carbon, and hydrogen.




Hydrogen < Carbon < Nitrogen

More electronegative atom develops a ______ ______ charge.

Partial Negative.

Less electronegative atom develops a ______ _____ charge.

Partial Positive.





*EXCEPTION*

To rule of a polar bond forming between 2 different atoms.




ex. Carbon bonding with hydrogen

What type of bond is formed between two oxygen atoms?

Oxygen atoms each contain six electrons in their outer orbitals and each have room for two more. In a double bond they share two pairs of electrons and thereby each satisfies the octet rule.

Why are some covalent bonds nonpolar and others polar?

A covalent bond between atoms of the same element will result in an equal distribution of electrons across the molecule since both atoms are equally electronegative, resulting in a nonpolar molecule. Molecules composed of different atoms result in an unequal distribution of charge across the molecule, where more electronegative atoms have a slightly negative charge and less electronegative atoms are slightly less negative.

What is a nonpolar molecule?

Contain nonpolar covalent bonds.



Ex. O--O and C--H are nonpolar bonds

What are polar molecules?

Molecules contain polar covalent bonds.



O—H is a polar bond in the polar molecule water (H2O)

What is an amphipathic molecule?

Large molecules with both polar and nonpolar regions



E.g., phospholipids

Is molecular oxygen nonpolar or polar?

No polarity, since it is electronegative .

Is carbon dioxide polar or nonpolar?

*

What is an intermolecular attraction?

Weak chemical attractions between molecules.



Important for shape of complex molecules.




E.g., DNA and proteins

What a hydrogen bond?

Forms between polar molecules.



Attraction between partially positive hydrogen atom and a partially negative atom




Individually weak, collectively strong.




Influences how water molecules behave

Van der Waals force is ______.

An extremely weak electrical force, but the bigger the molecule, the stronger it is.

Define hydrophobic.

Hydro= Water


Phobic= Fear


Hydrophobic= fear of water.




If occurring between 2 large molecules, it is termed as intramolecular attraction.

What is the name of the intermolecular attraction between a partially charged hydrogen of one polar molecule with a partially negative atom of another polar molecule?

A Hydrogen bond is an intermolecular attraction between a slightly positive hydrogen atom and another slightly negative atom.

Describe the molecular structure of water and how water molecules form four hydrogen bonds.

*

List the different properties of water and provide an example of the importance of each property within the body.

Transports


Substances dissolved in H20 moved throughout body


Lubricates


Decreases friction b/w body structure (serous fluid)


Cushions


Absorbs sudden forces of body movements (CSF)


Excretes Waste

Compare substances that dissolve in water with those that both dissolve and dissociate in water. Distinguish between electrolytes and nonelectrolytes.

Covalently bonded compounds such as glucose will not dissociate when dissolved in water; however, they will remain in solution after the mixture is no longer agitated. Ionic compounds such as sodium chloride (NaCl) will disassociate in water. The polar water molecules will disrupt the electrostatic interactions between sodium and chloride ions, thereby separating them

Describe the chemical interactions of nonpolar substances and water.

*

Explain how amphipathic molecules interact in water to form chemical barriers.

*

What composes 2/3s of the human body by weight?

WATER!!!!

Water is a polar molecule that has ________.

oOneoxygen atom bonded to two hydrogen atoms



oOxygenatom has two partial negative charges




oHydrogenshave single partial positive charge

Water can form ___ hydrogen bonds with adjacent molecules.

4.




Central to water's properties.

What are the 3 phases of water?




Define each.

Gas (water vapor)- substance with low molecular mass.




Liquid (water)- almost all water in the body




Solid (ice)

What are the functions of liquid water?




Define each.

Transports

-Substances dissolved in water move easily throughout body


Lubricates


-Decreases friction between body structures


Cushions


-Absorbs sudden force of body movements Excretes wastes


-Unwanted substances dissolve in water are easily eliminated

What is cohesion?

Attraction between water molecules due to hydrogen bonding

What is surface tension?

Inward pulling of cohesive forces at surface of water.

Causes moist sacs of air in lungs to collapse


--Surfactant, a lipoprotein, prevents collapse

What is adhesion?

Attraction between water molecules and a substance other than water

What is temperature?

Measure of kinetic energy of atoms or molecules within a substance

What is specific heat?

Amount of energy required to increase temperature of 1 gram of a substance by 1 degree Celsius.



Water’s value extremely high due to energy needed to break hydrogen bonds.




Contributes to keeping body temperature constant

What is the heat of vaporization?

Heat required for release of molecules from a liquid phase into a gaseous phase for 1 gram of a substance.



Water’s value very high due to hydrogen bonding




Sweating cools body


-Excess heat dissipated as water evaporates

Which property of water contributes to the need to produce surfactant to prevent the collapse of the alveoli?

*

Which property contributes to body temperature regulation through sweating?

The high heat of vaporization of water molecules makes them an effective mechanism for dissipating heat at the surface of the skin.

Why is sweating less effective in cooling the body on a humid day?

*

Water is a ______ of the body.

Solvent.

Define solute.

Solutes are substances that dissolve in water

Why is water defined as the universal solvent?

Water is called universal solvent because most substances dissolve in it

What determines whether a substance will dissolve or not?

The chemical property.

Define Hydrophilic.

Water Loving.

Water surrounds substances and forms a _____ _______.

Hydration shell.

What is a nonelectrolyte?

A substance that remains intact, but does not conduct a current.

Substances _____ and _______ (separate).

Dissolve.




Dissociate.

What can an electrolyte conduct?

It can conduct a current.

Define Hydrophobic exclusion.

cohesive water molecules “force out” nonpolar molecules

Define hydrophobic interaction.

"excluded molecules”
Hydrophobic substances require _______ _______ to be transported within the blood

Carrier proteins.

Amphipathic molecules have polar and nonpolar regions.
Polar portion of molecule dissolves in water.



Nonpolar portion repelled by water

Phospholipid molecules are ______.

Amphipathic.




Polar heads have contact with water.


Nonpolar tails group together.


Results in bilayers of phospholipid molecules. E.g., membranes of a cell

Other amphipathic molecules form a ______.

Micelle.

Describe what is formed when water dissociates.

*

Explain the difference between an acid and a base.

*

Define pH and explain the relative pH values of both acids and bases.

*

Explain the term neutralization, and describe how the neutralization of both an acid and a base occur.

*

Describe the action of a buffer.

Buffers maintain the pH of physiologic solutions within a normal range by absorbing hydrogen ions when an acid is added or hydroxyls when a base is added to the solution.

Water can spontaneously dissociate to form ____.

Ions.

How does the interaction of a nonelectrolyte and water differ from the interaction of an electrolyte and water?

Nonelectrolytic molecules such as glucose do not dissociate in water. Electrolytes such as sodium chloride (NaCl) disassociate into constituent ions in an aqueous environment, forming a solution capable of conducting electricity.

Why is water neutral?

*

Acid dissociates in water to produce?

H+ and an anion.


Proton donor


Increases concentration of free H+


More dissociation of H+ with stronger acids


-----E.g., HCl in the stomach


Less dissociation of H+ with weaker acids


-----E.g., carbonic acid in the blood




Substance A (an acid in water) --> H+ + Anion

Base accepts _____ when added to a solution.

H+.




Proton acceptor.


More absorption of H+ with stronger bases


--E.g., ammonia and bleach


Less absorption of H+ with weaker bases


--E.g., bicarbonate in blood and in secretions released into small intestine


Substance B (a base in water) + H+ B—H

pH is a measure of ____.

H+.




Range between 0-14.

pH and H+ concentration are inversely related because ___?

Inverse of the log for a given H+ concentration



As H+ concentration increases, pH decreases




As H+ concentration decreases, pH increases

Solutions with equal concentrations of H+ and OH–, have a?

have a pH of 7 and are neutral.

Solutions with greater H+ than OH–

Have a pH of <7 and are acidic.

Solutions with greater OH– than H+

Have a pH >7 and are basic (alkaline)

What is neutralization?

When an acidic or basic solution is returned to neutral (pH 7)



Acids neutralized by adding base




Bases neutralized by adding acid

What is a buffer?

Help prevent pH changes if excess acid or base is added

Act to accept H+ from excess acid or donate H+ to neutralize base


------Carbonic acid (weak acid) and bicarbonate (weak base) buffer blood pH


------Both help maintain blood pH in a critical range (7.35 to 7.45)

What type of substances release H+ when added to water?

An acid is capable of releasing hydrogen ions in an aqueous environment

What is the general relationship of H+ and pH?

pH is the relative measure of hydrogen ions in a solution

Why are buffers important?


Buffers maintain the pH of physiologic solutions within a normal range by absorbing hydrogen ions when an acid is added or hydroxyls when a base is added to the solution.

Compare and contrast the three different types of water mixtures.

*

Explain how an emulsion differs from other types of mixtures.

*

Explain the different ways to express the concentration of solute in a solution.

*

Define mixture.

Mixtures are formed from combining two or more substances

What are the 2 defining features of a mixture?

Substances mixed are not chemically changed.



Substances can be separated by physical means

What are the 3 categories of water mixtures?




Define each.

Suspension: material larger in size than 100 nanometers mixed with water (does not remain mixed unless in motion, scatters light and appears opaque/cloudy)

Colloid: protein of size from 1to100 nanometers (Remains mixed when not in motion, scatter light)


Solution: homogeneous mixture of material smaller than 1 nanometer (Does not scatter light or settle if solution is not in motion.

What is the special category of suspension?

Emulsion.




Water and a nonpolar liquid substance, does not mix unless shaken.

What is concentration determined by?

Concentration is determined by the amount of solute dissolved in a solution

What are the expressions of concentration?

Mass/volume

--Mass of solute per volume of solution


Mass/volume percent


--Grams of solute per 100 mL solution


Molarity


--Moles solute/L solution (more easily measure in the body, than molality)


Molality


--Moles solute/kg solvent (slightly more accurate than molarity)





What is Osmoles?

Osmoles (osm) is the unit of measurement for the number of particles in a solution.



Reflects whether a substance dissolves, or dissolves and dissociates.




Can be expressed as osmolarity or osmolality.

Define Osmolarity.

Number of particles in a 1 liter solution.

Easier to measure.


Blood serum expresses as milliosmoles

Define Osmolality.

Number of particles in 1 kg of water.

More accurate, but difficult to measure

A water mixture of unknown type shows settling of materials to the bottom of the tube when it is not in motion. What type is it?

*

What are the four ways solution concentration may be expressed?

*

Differentiate between an organic molecule and an inorganic molecule.

*

Describe the general chemical composition of biomolecules.

*

Define a monomer and polymer.

*

Describe the role of water in both dehydration and hydrolysis reactions in altering biomolecules.

*

Describe the general characteristics of a lipid.

*

Identify the four types of lipids and their physiologic roles.

*

Describe the distinguishing characteristics of carbohydrates.

*

Explain the relationship between glucose and glycogen.

*

Name some other carbohydrates found in living systems.

*

Describe the general structure of a nucleic acid.

*

Describe the structure of a nucleotide monomer.

*

Distinguish between DNA and RNA.

*

Name other important nucleotides.

*

List the general functions of proteins.

catalyzing chemical reactions


synthesizing and repairing DNA


transporting materials across the cell


receiving and sending chemical signals


responding to stimuli


providing structural support

Describe the general structure of amino acids and proteins.

*

What are the three biomolecules that are polymers?

There are four major classes of biomolecules:


Carbohydrates


Lipids


Proteins


Nucleic acids

What are the monomers that compose them?

C- monosaccharides


P- amino acids


N. A.- nucleotides


L- glycerol and fatty acids

Which class of lipids forms cell membranes?

Phospholipid

What is a lipid?




What are the main functions of a lipid?

Diverse group of fatty, water-insoluble molecules.



Function as stored energy, cellular membrane components, hormones

What are the 4 primarily classes of a lipid?

1.Triglycerides

2.Phospholipids


3.Steroids


4.Eicosanoids

What is a triglyceride?

Most common form of lipid in living things. Long-term energy storage in adipose tissueStructural support, cushioning, insulation. Formed from a glycerol molecule and three fatty acids

—H from the glycerol, an —OH from the fatty acid


Formed during a dehydration synthesis

Define Saturated, unsaturated, and polyunsaturated.

Saturated, lack double bonds

Unsaturated, one double bondPolyunsaturated, two or more double bonds

Define Lipogenesis.

formation of triglycerides when conditions of excess nutrients exist

Define Lipolysis.

Breakdown of triglycerides when nutrients are needed

What is a phospholipid?

Amphipathic molecules that form chemical barriers of cell membranes

What is a steroid?

Composed of hydrocarbons arranged in multiringed structure

Four carbon rings; three have 6 carbon atoms, one has 5 carbon atoms

What is an eicosanoid?




What are the primary functions?

Modified 20-carbon fatty acids



Primary functions in the inflammatory response and nervous system communication.

What are 4 class of Eicosanoids?

1.Prostaglandins

2.Prostacyclins


3.Thromboxanes


4.Leukotrienes

Which class of lipids forms cell membranes?

Phospholipid

Most animal fats are _______, at room temperature.

Saturated

Most vegetable fats are ________, generally healthier.

Unsaturated.

Partial hydrogenation may lead to ______ _____.

Trans Fats.

What is the repeating monomer of glycogen?

Glucose monomer

Where is glycogen stored in the body?

Glycogen is made and mainly stored primarily in the cells of the liver and the muscle hydrated with 3 or 4 parts of water.

Is galactose a monosaccharide, disaccharide or polysaccharide?

Monosaccharide

Is sucrose a monosaccharide, disaccharide or polysaccharide?

Disaccharide

What are the structural differences between RNA and DNA?

RNA has the sugar ribose, it is single stranded and has the base U instead of T



DNA has the sugar deoxyribose, it is double stranded and has the Base T not U

What are the functions of proteins?

Serve as catalysts (enzymes) in metabolic reactions

Act in defense Aid in transport


Contribute to structural support


Cause movement


Perform regulation


Provide storage

Define N-terminal end.




Define C-terminal end.

N-terminal end has free amine group.



C-terminal end has free carboxyl group

What are the monomers of proteins?

Amino acids

Name the categories of amino acids.

*

Distinguish between nonpolar, polar, and charged amino acids.

*

Give examples of amino acids with special characteristics.

*

Describe the different types of intramolecular attractions that participate in both the folding of a protein and in maintaining its three-dimensional shape.

*

Distinguish between the four structural hierarchy levels of proteins.

1.Primary structure


The sequence of amino acids in the protein's polypeptide chain(s).


2. Secondary structure


Arises from segments of the polypeptide chain repeatedly coiled and folded in patterns because of hydrogen bonding between parts of the polypeptide back bone.


Secondary structure can be:


a) Alpha-helix: cyclindrical coil


b) Beta-sheet: a pleated sheet


c) Random coil: no regular structure


Tertiary structure


Overall shape of the polypeptide resulting from interactions between side chains (R groups) of amino acids.


Quaternary structure


The number and relative positions of polypeptide subunits in a multimeric protein.

Explain what is meant by denaturation and list factors that can cause it.

Heat, pH extremes, chemicals, electricity, radiation, and by other causes all denature protein, which means enzymes (proteins) become altered.

Distinguish between the primary, secondary, tertiary, and quaternary levels of protein organization?

There are different levels of protein organization; primary protein structure, secondary protein structure, tertiary protein structure, and quaternary protein structure. Primary protein structure is a chain of a sequence of amino acids. Secondary protein structure occurs when the sequence of amino acids are linked by hydrogen bonds. Secondary is the most common and includes alpha helix and beta pleated sheets. Tertiary protein structure are three dimensional structures that form from globular proteins. The 3D shape comes from interatcions of secondary strucutres. Quaternary protein structure occurs when two or more folded polypeptides in a tertiary structure form a functional protein.